Evolution under Fluctuating Environments Explains Observed Robustness in Metabolic Networks
暂无分享,去创建一个
[1] G. Wagner,et al. Evolution of Dominance in Metabolic Pathways , 2004, Genetics.
[2] M. Huynen,et al. Neutral evolution of mutational robustness. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[3] Martin A. Nowak,et al. Evolution of genetic redundancy , 1997, Nature.
[4] A. Wagner. Robustness against mutations in genetic networks of yeast , 2000, Nature Genetics.
[5] U. Alon,et al. Spontaneous evolution of modularity and network motifs. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[6] Jianzhi Zhang,et al. Abundant Indispensable Redundancies in Cellular Metabolic Networks , 2009, Genome biology and evolution.
[7] R Mahadevan,et al. The degree of redundancy in metabolic genes is linked to mode of metabolism. , 2008, Biophysical journal.
[8] Marcel Salathé,et al. Parasites lead to evolution of robustness against gene loss in host signaling networks , 2008, Molecular systems biology.
[9] Michael Turelli,et al. Polygenic variation maintained by balancing selection: pleiotropy, sex-dependent allelic effects and G x E interactions. , 2004, Genetics.
[10] J. Gillespie. MOLECULAR EVOLUTION OVER THE MUTATIONAL LANDSCAPE , 1984, Evolution; international journal of organic evolution.
[11] H. Kacser,et al. The molecular basis of dominance. , 1981, Genetics.
[12] M. Turelli,et al. Genotype-environment interactions and the maintenance of polygenic variation. , 1989, Genetics.
[13] A. Bergman,et al. Waddington's canalization revisited: Developmental stability and evolution , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[14] P. Bork,et al. Metabolites: a helping hand for pathway evolution? , 2003, Trends in biochemical sciences.
[15] R. Jensen. Enzyme recruitment in evolution of new function. , 1976, Annual review of microbiology.
[16] A. Force,et al. The probability of duplicate gene preservation by subfunctionalization. , 2000, Genetics.
[17] C. Hutchison,et al. Essential genes of a minimal bacterium. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[18] A. Wagner. DOES EVOLUTIONARY PLASTICITY EVOLVE? , 1996, Evolution; international journal of organic evolution.
[19] Andreas Wagner,et al. Molecular evolution in the yeast transcriptional regulation network. , 2004, Journal of experimental zoology. Part B, Molecular and developmental evolution.
[20] Dan S. Tawfik,et al. Enzyme promiscuity: evolutionary and mechanistic aspects. , 2006, Current opinion in chemical biology.
[21] D. Segrè,et al. Supporting Online Material Materials and Methods Tables S1 and S2 References the Effect of Oxygen on Biochemical Networks and the Evolution of Complex Life , 2022 .
[22] Timothy Hughes,et al. The Pattern of Evolution of Smaller-Scale Gene Duplicates in Mammalian Genomes is More Consistent with Neo- than Subfunctionalisation , 2007, Journal of Molecular Evolution.
[23] Y. Dong,et al. Systematic functional analysis of the Caenorhabditis elegans genome using RNAi , 2003, Nature.
[24] Sebastian Bonhoeffer,et al. The Evolution of Connectivity in Metabolic Networks , 2005, PLoS biology.
[25] H. Kacser,et al. Evolution of catalytic proteins , 1984, Journal of Molecular Evolution.
[26] A. Force,et al. Preservation of duplicate genes by complementary, degenerative mutations. , 1999, Genetics.
[27] Orkun S Soyer,et al. Emergence and maintenance of functional modules in signaling pathways , 2007, BMC Evolutionary Biology.
[28] Robert P. St.Onge,et al. The Chemical Genomic Portrait of Yeast: Uncovering a Phenotype for All Genes , 2008, Science.
[29] Nevan J Krogan,et al. Backup without redundancy: genetic interactions reveal the cost of duplicate gene loss , 2007, Molecular systems biology.
[30] Paul L. Krapivsky,et al. Signatures of Arithmetic Simplicity in Metabolic Network Architecture , 2009, PLoS Comput. Biol..
[31] Edward M Marcotte,et al. Buffering by gene duplicates: an analysis of molecular correlates and evolutionary conservation , 2008, BMC Genomics.
[32] S. Ehrlich,et al. Essential Bacillus subtilis genes , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[33] D. Liberles,et al. Subfunctionalization of duplicated genes as a transition state to neofunctionalization , 2005, BMC Evolutionary Biology.
[34] M. Schmid,et al. Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana , 2003, Science.
[35] A. Wagner,et al. The role of population size, pleiotropy and fitness effects of mutations in the evolution of overlapping gene functions. , 2000, Genetics.
[36] C. Wilke,et al. Evolution of mutational robustness. , 2003, Mutation research.
[37] Hod Lipson,et al. ON THE ORIGIN OF MODULAR VARIATION , 2002, Evolution; international journal of organic evolution.
[38] Andreas Wagner,et al. Duplicate genes and robustness to transient gene knock-downs in Caenorhabditis elegans , 2004, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[39] G. Wagner,et al. EVOLUTION AND DETECTION OF GENETIC ROBUSTNESS , 2003 .
[40] Ronald W. Davis,et al. Role of duplicate genes in genetic robustness against null mutations , 2003, Nature.
[41] S. Oliver,et al. Plasticity of genetic interactions in metabolic networks of yeast , 2007, Proceedings of the National Academy of Sciences.
[42] Dan S. Tawfik,et al. The 'evolvability' of promiscuous protein functions , 2005, Nature Genetics.
[43] R. Lenski,et al. The population genetics of ecological specialization in evolving Escherichia coli populations , 2000, Nature.
[44] Juan Carlos Nuño,et al. METATOOL: for studying metabolic networks , 1999, Bioinform..
[45] Ronald W. Davis,et al. Functional profiling of the Saccharomyces cerevisiae genome , 2002, Nature.
[46] K. H. Wolfe,et al. Reproductive toxicology. Chemical mixture. , 1997, Environmental health perspectives.
[47] R. Milo,et al. Design and analysis of synthetic carbon fixation pathways , 2010, Proceedings of the National Academy of Sciences.
[48] J. B. Walsh,et al. How often do duplicated genes evolve new functions? , 1995, Genetics.
[49] Michael Lynch,et al. The Origin of Subfunctions and Modular Gene Regulation , 2005, Genetics.
[50] George Georgiou,et al. Engineering of protease variants exhibiting high catalytic activity and exquisite substrate selectivity. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[51] Kenneth H Wolfe,et al. Increased glycolytic flux as an outcome of whole-genome duplication in yeast , 2007, Molecular Systems Biology.
[52] Jianzhi Zhang,et al. Rapid Subfunctionalization Accompanied by Prolonged and Substantial Neofunctionalization in Duplicate Gene Evolution , 2005, Genetics.
[53] C. Pál,et al. Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast , 2004, Nature.
[54] Orkun S. Soyer,et al. The Promise of Evolutionary Systems Biology: Lessons from Bacterial Chemotaxis , 2010, Science Signaling.
[55] Bas Teusink,et al. A critical view of metabolic network adaptations , 2009, HFSP journal.