Phylogenetic analysis of Fosterella L.B. Sm. (Pitcairnioideae, Bromeliaceae) based on four chloroplast DNA regions.

The about 31 species of Fosterella L.B. Sm. (Bromeliaceae) are terrestrial herbs with a centre of diversity in the central South American Andes. To resolve infra- and intergeneric relationships among Fosterella and their putative allies, we conducted a phylogenetic analysis based on sequence data from four chloroplast DNA regions (matK gene, rps16 intron, atpB-rbcL and psbB-psbH intergenic spacers). Sequences were generated for 96 accessions corresponding to 60 species from 18 genera. Among these, 57 accessions represented 22 of the 31 recognized Fosterella species and one undescribed morphospecies. Maximum parsimony and Bayesian inference methods yielded well-resolved phylogenies. The monophyly of Fosterella was strongly supported, as was its sister relationship with a clade comprising Deuterocohnia, Dyckia and Encholirium. Six distinct evolutionary lineages were distinguished within Fosterella. Character mapping indicated that parallel evolution of identical character states is common in the genus. Relationships between species and lineages are discussed in the context of morphological, ecological and biogeographical data as well as the results of a previous amplified fragment length polymorphism (AFLP) study.

[1]  J. A. Smith,et al.  Multiple origins of crassulacean acid metabolism and the epiphytic habit in the Neotropical family Bromeliaceae. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[2]  Bengt Oxelman,et al.  Chloroplastrps16 intron phylogeny of the tribeSileneae (Caryophyllaceae) , 1997, Plant Systematics and Evolution.

[3]  D. Tuthill,et al.  Monophyly and Phylogenetic Relationships in Lymania (Bromeliaceae: Bromelioideae) Based on Morphology and Chloroplast DNA Sequences , 2007 .

[4]  Michael J. Sanderson,et al.  Molecular Evolution and Adaptive Radiation , 1998 .

[5]  P. Ibisch,et al.  Key to the Species of the Genus Fosterella (Bromeliaceae) , 2008 .

[6]  R. Horres,et al.  SYSTEMATICS OF BROMELIOIDEAE (BROMELIACEAE)¯EVIDENCE FROM MOLECULAR AND ANATOMICAL STUDIES , 2007 .

[7]  P. Ibisch,et al.  Towards a taxonomic revision of the genus Fosterella (Bromeliaceae) , 2008 .

[8]  Mark P. Simmons,et al.  Gaps as characters in sequence-based phylogenetic analyses. , 2000, Systematic biology.

[9]  John P. Huelsenbeck,et al.  MRBAYES: Bayesian inference of phylogenetic trees , 2001, Bioinform..

[10]  P. Ibisch,et al.  AFLP analysis of genetic relationships in the genus Fosterella L.B. Smith (Pitcairnioideae, Bromeliaceae). , 2007, Genome.

[11]  R. Horres,et al.  Molecular phylogeny of Bromelioideae and its implications on biogeography and the evolution of CAM in the family , 2005 .

[12]  K. Müller,et al.  PRAP-computation of Bremer support for large data sets. , 2004, Molecular phylogenetics and evolution.

[13]  V. Albert,et al.  Phylogeny and classification of Oleaceae based on rps16 and trnL-F sequence data. , 2000, American journal of botany.

[14]  D. Morrison,et al.  Monocots: Systematics and Evolution , 2000 .

[15]  J. Felsenstein CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP , 1985, Evolution; international journal of organic evolution.

[16]  R. Horres,et al.  Revision of the genus Fascicularia Mez (Bromeliaceae) , 1999 .

[17]  T. Givnish,et al.  Ancient Vicariance or Recent Long‐Distance Dispersal? Inferences about Phylogeny and South American–African Disjunctions in Rapateaceae and Bromeliaceae Based on ndhF Sequence Data , 2004, International Journal of Plant Sciences.

[18]  J. Abe,et al.  Sequence variation of non-coding regions of chloroplast DNA of soybean and related wild species and its implications for the evolution of different chloroplast haplotypes , 2000, Theoretical and Applied Genetics.

[19]  E. Anastassopoulos DNA Fingerprinting in Plants. Principles, Methods, and Applications, Second edition , 2006 .

[20]  G. S. Varadarajan,et al.  Phylogenetic relationships of groups of genera within the subfamily Pitcairnioideae (Bromeliaceae) , 1988 .

[21]  K. Weising DNA fingerprinting in plants: principles, methods, and applications , 2005 .

[22]  K. Nixon,et al.  The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis , 1999, Cladistics : the international journal of the Willi Hennig Society.

[23]  James F. Smith Molecular Evolution and Adaptive Radiation in Brocchinia (Bromeliaceae: Pitcairnioideae) Atop Tepuis of the Guayana Shield , 1997 .

[24]  T. Stuessy,et al.  Phylogenetic relationships in subfamily Tillandsioideae (Bromeliaceae) based on DNA sequence data from seven plastid regions. , 2005, American journal of botany.

[25]  C. Neinhuis,et al.  Angiosperm phylogeny based on matK sequence information. , 2003, American journal of botany.

[26]  F. Ehrendorfer,et al.  Phylogeny ofRubiaceae-Rubieae inferred from the sequence of a cpDNA intergene region , 1994, Plant Systematics and Evolution.

[27]  David Posada,et al.  MODELTEST: testing the model of DNA substitution , 1998, Bioinform..

[28]  P. Ibisch,et al.  Novelties in Bolivian Fosterella (Bromeliaceae) , 2002 .

[29]  C. Martin Physiological ecology of the Bromeliaceae , 2008, The Botanical Review.

[30]  G. S. Varadarajan,et al.  Taxonomic Realignments within the Subfamily Pitcairnioideae (Bromeliaceae) , 1988 .

[31]  H. Luther Miscellaneous new taxa of Bromeliaceae (IX) , 1995 .

[32]  G. Zizka,et al.  Multi locus plastid phylogeny of Bromelioideae (Bromeliaceae) and the taxonomic utility of petal appendages and pollen characters , 2008 .

[33]  H. Akaike A new look at the statistical model identification , 1974 .

[34]  John Healy,et al.  GapCoder automates the use of indel characters in phylogenetic analysis , 2003, BMC Bioinformatics.

[35]  D. Swofford PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0b10 , 2002 .

[36]  T. Givnish,et al.  PHYLOGENY, ADAPTIVE RADIATION, AND HISTORICAL BIOGEOGRAPHY OF BROMELIACEAE INFERRED FROM ndhF SEQUENCE DATA , 2007 .

[37]  R. Olmstead,et al.  Examination of subfamilial phylogeny in Bromeliaceae using comparative sequencing of the plastid locus ndhF. , 1997, American journal of botany.

[38]  Douglas E. Soltis,et al.  Phylogenetic Inference in Saxifragaceae Sensu Stricto and Gilia (Polemoniaceae) Using matK Sequences , 1995 .

[39]  R. Horres,et al.  Molecular Phylogenetics of Bromeliaceae: Evidence from trnL(UAA) Intron Sequences of the Chloroplast Genome , 2000 .

[40]  Martin C. Frith,et al.  SeqVISTA: a graphical tool for sequence feature visualization and comparison , 2003, BMC Bioinformatics.

[41]  M. Duval,et al.  Relationships in Ananas and other related genera using chloroplast DNA restriction site variation. , 2003, Genome.

[42]  K. Nixon The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis , 1999 .