Force-Induced Bidirectional Stepping of Cytoplasmic Dynein

Cytoplasmic dynein is a minus-end-directed microtubule motor whose mechanism of movement remains poorly understood. Here, we use optical tweezers to examine the force-dependent stepping behavior of yeast cytoplasmic dynein. We find that dynein primarily advances in 8 nm increments but takes other sized steps (4-24 nm) as well. An opposing force induces more frequent backward stepping by dynein, and the motor walks backward toward the microtubule plus end at loads above its stall force of 7 pN. Remarkably, in the absence of ATP, dynein steps processively along microtubules under an external load, with less force required for minus-end- than for plus-end-directed movement. This nucleotide-independent walking reveals that force alone can drive repetitive microtubule detachment-attachment cycles of dynein's motor domains. These results suggest a model for how dynein's two motor domains coordinate their activities during normal processive motility and provide new clues for understanding dynein-based motility in living cells.

[1]  R. Vallee,et al.  Dynein: An ancient motor protein involved in multiple modes of transport. , 2004, Journal of neurobiology.

[2]  S. Gross Hither and yon: a review of bi-directional microtubule-based transport , 2004, Physical biology.

[3]  M. Welte,et al.  Bidirectional Transport along Microtubules , 2004, Current Biology.

[4]  Christoph F. Schmidt,et al.  Direct observation of kinesin stepping by optical trapping interferometry , 1993, Nature.

[5]  M. Koonce,et al.  The dynein heavy chain: structure, mechanics and evolution. , 2001, Trends in cell biology.

[6]  E. Salmon,et al.  Dynamic positioning of mitotic spindles in yeast: role of microtubule motors and cortical determinants. , 2000, Molecular biology of the cell.

[7]  Y. Goldman,et al.  Processive bidirectional motion of dynein–dynactin complexes in vitro , 2006, Nature Cell Biology.

[8]  Steven M. Block,et al.  Force and velocity measured for single kinesin molecules , 1994, Cell.

[9]  Justin E. Molloy,et al.  The gated gait of the processive molecular motor, myosin V , 2002, Nature Cell Biology.

[10]  T. Schroer,et al.  Dynactin increases the processivity of the cytoplasmic dynein motor , 1999, Nature Cell Biology.

[11]  M. Kollmar,et al.  Structure of a genetically engineered molecular motor , 2001, The EMBO journal.

[12]  G. Schwarz Estimating the Dimension of a Model , 1978 .

[13]  J. Gelles,et al.  Distinguishing Inchworm and Hand-Over-Hand Processive Kinesin Movement by Neck Rotation Measurements , 2002, Science.

[14]  G. I. Bell Models for the specific adhesion of cells to cells. , 1978, Science.

[15]  Amber L. Wells,et al.  Myosin VI is a processive motor with a large step size , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[16]  Mark J. Schnitzer,et al.  Single kinesin molecules studied with a molecular force clamp , 1999, Nature.

[17]  Richard B. Vallee,et al.  An extended microtubule-binding structure within the dynein motor domain , 1997, Nature.

[18]  A. Silvanovich,et al.  The third P-loop domain in cytoplasmic dynein heavy chain is essential for dynein motor function and ATP-sensitive microtubule binding. , 2003, Molecular biology of the cell.

[19]  A. Wilkinson,et al.  AAA+ superfamily ATPases: common structure–diverse function , 2001, Genes to cells : devoted to molecular & cellular mechanisms.

[20]  Ronald D Vale,et al.  The Molecular Motor Toolbox for Intracellular Transport , 2003, Cell.

[21]  Samara L. Reck-Peterson,et al.  Single-Molecule Analysis of Dynein Processivity and Stepping Behavior , 2006, Cell.

[22]  S. Gross,et al.  Building Complexity: An In Vitro Study of Cytoplasmic Dynein with In Vivo Implications , 2005, Current Biology.

[23]  B. C. Carter,et al.  Cytoplasmic dynein functions as a gear in response to load , 2004, Nature.

[24]  Yoshinori Takahashi,et al.  Multiple ATP-hydrolyzing sites that potentially function in cytoplasmic dynein. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[25]  Toshio Yanagida,et al.  Chemomechanical coupling of the forward and backward steps of single kinesin molecules , 2002, Nature Cell Biology.

[26]  Liedewij Laan,et al.  Assembly dynamics of microtubules at molecular resolution , 2006, Nature.

[27]  R. Vale,et al.  Single-molecule behavior of monomeric and heteromeric kinesins. , 1999, Biochemistry.

[28]  Ronald D Vale,et al.  Conversion of Unc104/KIF1A Kinesin into a Processive Motor After Dimerization , 2002, Science.

[29]  John Trinick,et al.  Two-headed binding of a processive myosin to F-actin , 2000, Nature.

[30]  R. Vallee,et al.  The dynein family at a glance , 2006, Journal of Cell Science.

[31]  S. Burgess,et al.  Dynein structure and power stroke , 2003, Nature.

[32]  Jonathon Howard,et al.  Detection of fractional steps in cargo movement by the collective operation of kinesin-1 motors , 2007, Proceedings of the National Academy of Sciences.

[33]  R. Kamiya,et al.  High-frequency nanometre-scale vibration in 'quiescent' flagellar axonemes , 1989, Nature.

[34]  J. Spudich Molecular Motors Take Tension in Stride , 2006, Cell.

[35]  K. Sutoh,et al.  ATP hydrolysis cycle–dependent tail motions in cytoplasmic dynein , 2005, Nature Structural &Molecular Biology.

[36]  Matthias Rief,et al.  Myosin-V is a mechanical ratchet. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[37]  Toshio Yanagida,et al.  Dynein arms are oscillating force generators , 1998, Nature.

[38]  L. Amos,et al.  Antibodies to cytoplasmic dynein heavy chain map the surface and inhibit motility. , 2001, Journal of molecular biology.

[39]  Joshua W. Shaevitz,et al.  Probing the kinesin reaction cycle with a 2D optical force clamp , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[40]  Hideo Higuchi,et al.  Overlapping hand-over-hand mechanism of single molecular motility of cytoplasmic dynein. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[41]  Anthony A. Hyman,et al.  Spindle Oscillations during Asymmetric Cell Division Require a Threshold Number of Active Cortical Force Generators , 2006, Current Biology.

[42]  R. Cross,et al.  Mechanics of the kinesin step , 2005, Nature.

[43]  M. Koonce,et al.  Functional elements within the dynein microtubule-binding domain. , 2000, Molecular biology of the cell.

[44]  Toshio Yanagida,et al.  Class VI myosin moves processively along actin filaments backward with large steps. , 2002, Biochemical and biophysical research communications.

[45]  Paul R. Selvin,et al.  Myosin V Walks Hand-Over-Hand: Single Fluorophore Imaging with 1.5-nm Localization , 2003, Science.

[46]  R Kamiya,et al.  High-frequency vibration in flagellar axonemes with amplitudes reflecting the size of tubulin , 1992, The Journal of cell biology.

[47]  M. Sheetz,et al.  Single cytoplasmic dynein molecule movements: characterization and comparison with kinesin. , 1995, Biophysical journal.

[48]  D. Schild,et al.  Finite-particle tracking reveals submicroscopic-size changes of mitochondria during transport in mitral cell dendrites , 2006, Physical biology.

[49]  Matthias Rief,et al.  Myosin-V is a processive actin-based motor , 1999, Nature.

[50]  Kazuo Sutoh,et al.  Distinct functions of nucleotide-binding/hydrolysis sites in the four AAA modules of cytoplasmic dynein. , 2004, Biochemistry.

[51]  Samara L. Reck-Peterson,et al.  Molecular dissection of the roles of nucleotide binding and hydrolysis in dynein's AAA domains in Saccharomyces cerevisiae. , 2004, Proceedings of the National Academy of Sciences of the United States of America.