Glial dysregulation in the human brain in fragile X-associated tremor/ataxia syndrome

Significance Genetic variation at the FMR1 locus confers risk for both the neurodevelopmental disorder fragile X syndrome and the neurodegenerative condition fragile X-associated tremor/ataxia syndrome. Although animal models have been critical in elucidating molecular mechanisms of cellular dysfunction in fragile X-related disorders, understanding how the human brain is directly impacted remains unresolved. We conducted a cell type–specific transcriptomic analysis of postmortem human brains from individuals with fragile X mutations and matched controls, sequencing over 120,000 nuclei from the frontal cortex and cerebellum. We find evidence for cell type–specific, disease-specific, and regional-specific patterns of transcriptional and FMR1 protein (FMRP) network perturbations, providing a foundation for therapeutic development directly derived from the human condition.

[1]  Evan Z. Macosko,et al.  Peer Review File Manuscript Title: A transcriptomic atlas of mouse cerebellar cortex reveals novel cell types Editorial Notes: Reviewer Comments & Author Rebuttals , 2020 .

[2]  P. Jin,et al.  A human forebrain organoid model of fragile X syndrome exhibits altered neurogenesis and highlights new treatment strategies , 2021, Nature Neuroscience.

[3]  J. Fak,et al.  FMRP regulates mRNAs encoding distinct functions in the cell body and dendrites of CA1 pyramidal neurons , 2021, bioRxiv.

[4]  Chadwick M. Hales,et al.  Cell-type-specific profiling of human cellular models of fragile X syndrome reveal PI3K-dependent defects in translation and neurogenesis , 2021, Cell reports.

[5]  Caleb A. Doll,et al.  Fmrp regulates oligodendrocyte lineage cell specification and differentiation , 2021, bioRxiv.

[6]  Jeremy A. Miller,et al.  Comprehensive in situ mapping of human cortical transcriptomic cell types , 2021, Communications Biology.

[7]  K. Fukunaga,et al.  CGG repeat RNA G-quadruplexes interact with FMRpolyG to cause neuronal dysfunction in fragile X-related tremor/ataxia syndrome , 2021, Science Advances.

[8]  B. Khakh,et al.  Behaviorally consequential astrocytic regulation of neural circuits , 2020, Neuron.

[9]  L. Bosman,et al.  Lack of a Clear Behavioral Phenotype in an Inducible FXTAS Mouse Model Despite the Presence of Neuronal FMRpolyG-Positive Aggregates , 2020, Frontiers in Molecular Biosciences.

[10]  Gene W. Yeo,et al.  Repeat RNA expansion disorders of the nervous system: post-transcriptional mechanisms and therapeutic strategies , 2020, Critical reviews in biochemistry and molecular biology.

[11]  H. Inada,et al.  Identification of FMRP target mRNAs in the developmental brain: FMRP might coordinate Ras/MAPK, Wnt/β-catenin, and mTOR signaling during corticogenesis , 2020, Molecular Brain.

[12]  V. Gribkoff,et al.  ATP Synthase c-Subunit Leak Causes Aberrant Cellular Metabolism in Fragile X Syndrome , 2020, Cell.

[13]  Deborah Chasman,et al.  Identification of FMR1-regulated molecular networks in human neurodevelopment , 2020, Genome research.

[14]  Caleb A. Doll,et al.  The RNA binding protein fragile X mental retardation protein promotes myelin sheath growth , 2020, Glia.

[15]  M. Abbracchio,et al.  Regulation and signaling of the GPR17 receptor in oligodendroglial cells. , 2020, Glia.

[16]  Manuel Garber,et al.  Single cell transcriptomics reveals dysregulated cellular and molecular networks in a fragile X syndrome model , 2020, bioRxiv.

[17]  Allan R. Jones,et al.  Conserved cell types with divergent features in human versus mouse cortex , 2019, Nature.

[18]  Maximilian Haeussler,et al.  Single-cell genomics identifies cell type–specific molecular changes in autism , 2019, Science.

[19]  Perdeep K. Mehta,et al.  DiVenn: An Interactive and Integrated Web-Based Visualization Tool for Comparing Gene Lists , 2019, Front. Genet..

[20]  Eric L Van Nostrand,et al.  Widespread RNA editing dysregulation in brains from autistic individuals , 2018, Nature Neuroscience.

[21]  P. Hagerman,et al.  Microglial cell activation and senescence are characteristic of the pathology FXTAS , 2018, Movement disorders : official journal of the Movement Disorder Society.

[22]  A. Reiss,et al.  Neuroanatomical abnormalities in fragile X syndrome during the adolescent and young adult years. , 2018, Journal of psychiatric research.

[23]  A. Schneider,et al.  Fragile X-Associated Neuropsychiatric Disorders (FXAND) , 2018, Front. Psychiatry.

[24]  A. Estes,et al.  Development of White Matter Circuitry in Infants With Fragile X Syndrome , 2018, JAMA psychiatry.

[25]  I. Rozenberg,et al.  Protein synthesis levels are increased in a subset of individuals with fragile X syndrome , 2018, Human molecular genetics.

[26]  A. Marusin,et al.  Genetic Variants in CSMD1 Gene Are Associated with Cognitive Performance in Normal Elderly Population , 2017, Genetics research international.

[27]  E. Valjent,et al.  Cell Type-Specific mRNA Dysregulation in Hippocampal CA1 Pyramidal Neurons of the Fragile X Syndrome Mouse Model , 2017, Front. Mol. Neurosci..

[28]  Heather Cody Hazlett,et al.  Fragile X syndrome , 2017, Nature Reviews Disease Primers.

[29]  Mitesh Patel,et al.  Parkinson disease: CSMD1 gene mutations can lead to familial Parkinson disease , 2017, Nature Reviews Neurology.

[30]  Vilaiwan M. Fernandes,et al.  Glia relay differentiation cues to coordinate neuronal development in Drosophila , 2017, Science.

[31]  C. Paisán-Ruiz,et al.  Whole-exome sequencing associates novel CSMD1 gene mutations with familial Parkinson disease , 2017, Neurology: Genetics.

[32]  P. Billuart,et al.  The X-Linked Intellectual Disability Protein IL1RAPL1 Regulates Dendrite Complexity , 2017, The Journal of Neuroscience.

[33]  A. Różycka,et al.  The space where aging acts: focus on the GABAergic synapse , 2017, Aging cell.

[34]  Peter K. Todd,et al.  Translation of Expanded CGG Repeats into FMRpolyG Is Pathogenic and May Contribute to Fragile X Tremor Ataxia Syndrome , 2017, Neuron.

[35]  C. Wahlestedt,et al.  The FMR1 promoter is selectively hydroxymethylated in primary neurons of fragile X syndrome patients. , 2016, Human molecular genetics.

[36]  J. Bourgeois,et al.  Clinically significant psychiatric symptoms among male carriers of the fragile X premutation, with and without FXTAS, and the mediating influence of executive functioning , 2016, The Clinical neuropsychologist.

[37]  M. Ronaghi,et al.  Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain , 2016, Science.

[38]  Jens Hjerling-Leffler,et al.  Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system , 2016, Science.

[39]  Xinyu Zhao,et al.  Human pluripotent stem cell models of Fragile X syndrome , 2016, Molecular and Cellular Neuroscience.

[40]  W. Richardson,et al.  Oligodendrocyte Development and Plasticity. , 2016, Cold Spring Harbor perspectives in biology.

[41]  Parag Mallick,et al.  Neuronal Activity Promotes Glioma Growth through Neuroligin-3 Secretion , 2015, Cell.

[42]  J. Gécz,et al.  Novel IL1RAPL1 mutations associated with intellectual disability impair synaptogenesis. , 2015, Human molecular genetics.

[43]  H. Bellen,et al.  Glial Lipid Droplets and ROS Induced by Mitochondrial Defects Promote Neurodegeneration , 2015, Cell.

[44]  F. Tassone,et al.  Immune mediated disorders in women with a fragile X expansion and FXTAS , 2015, American journal of medical genetics. Part A.

[45]  J. Carson,et al.  FMRP and myelin protein expression in oligodendrocytes , 2013, Molecular and Cellular Neuroscience.

[46]  Peter K. Todd,et al.  CGG Repeat-Associated Translation Mediates Neurodegeneration in Fragile X Tremor Ataxia Syndrome , 2013, Neuron.

[47]  P. Hagerman Fragile X-associated tremor/ataxia syndrome (FXTAS): pathology and mechanisms , 2013, Acta Neuropathologica.

[48]  Talakad G. Lohith,et al.  Is metabotropic glutamate receptor 5 upregulated in prefrontal cortex in fragile X syndrome? , 2013, Molecular Autism.

[49]  Uwe Ohler,et al.  FMR1 targets distinct mRNA sequence elements to regulate protein expression , 2012, Nature.

[50]  Pierre J. Magistretti,et al.  Oligodendroglia metabolically support axons and contribute to neurodegeneration , 2012, Nature.

[51]  J. Fadel,et al.  Interneuron loss reduces dendritic inhibition and GABA release in hippocampus of aged rats , 2012, Neurobiology of Aging.

[52]  D. Licatalosi,et al.  FMRP Stalls Ribosomal Translocation on mRNAs Linked to Synaptic Function and Autism , 2011, Cell.

[53]  P. Hagerman,et al.  Differential usage of transcriptional start sites and polyadenylation sites in FMR1 premutation alleles , 2011, Nucleic acids research.

[54]  Declan G. M. Murphy,et al.  In vivo brain anatomy of adult males with Fragile X syndrome: An MRI study , 2011, NeuroImage.

[55]  K. Nave Myelination and support of axonal integrity by glia , 2010, Nature.

[56]  Michael T. Heneka,et al.  Neuroglia in neurodegeneration , 2010, Brain Research Reviews.

[57]  P. Hagerman,et al.  Advances in understanding the molecular basis of FXTAS. , 2010, Human molecular genetics.

[58]  S. Richard,et al.  Sam68 sequestration and partial loss of function are associated with splicing alterations in FXTAS patients , 2010, The EMBO journal.

[59]  J. Chelly,et al.  Novel mutation of IL1RAPL1 gene in a nonspecific X‐linked mental retardation (MRX) family , 2008, American journal of medical genetics. Part A.

[60]  P. Hagerman,et al.  The primary cognitive deficit among males with fragile X-associated tremor/ataxia syndrome (FXTAS) is a dysexecutive syndrome , 2008, Journal of clinical and experimental neuropsychology.

[61]  I. Weiler,et al.  Aberrant early-phase ERK inactivation impedes neuronal function in fragile X syndrome , 2008, Proceedings of the National Academy of Sciences.

[62]  Xiangrui Li,et al.  Decreased proportion of GABA neurons accompanies age-related degradation of neuronal function in cat striate cortex , 2008, Brain Research Bulletin.

[63]  A. Cuello,et al.  Cognitive impairment and transmitter‐specific pre‐ and postsynaptic changes in the rat cerebral cortex during ageing , 2007, The European journal of neuroscience.

[64]  Lexin Li,et al.  CGG repeat length correlates with age of onset of motor signs of the fragile X‐associated tremor/ataxia syndrome (FXTAS) , 2007, American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics.

[65]  Lexin Li,et al.  Elevated FMR1 mRNA in premutation carriers is due to increased transcription. , 2007, RNA.

[66]  Katherine E. Masyn,et al.  Molecular and imaging correlates of the fragile X–associated tremor/ataxia syndrome , 2006, Neurology.

[67]  M. Graeber,et al.  Glial degeneration and reactive gliosis in alpha-synucleinopathies: the emerging concept of primary gliodegeneration , 2006, Acta Neuropathologica.

[68]  D. Loesch,et al.  Abnormal elevation of FMR1 mRNA is associated with psychological symptoms in individuals with the fragile X premutation , 2005, American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics.

[69]  É. Khandjian,et al.  Intranuclear inclusions in neural cells with premutation alleles in fragile X associated tremor/ataxia syndrome , 2004, Journal of Medical Genetics.

[70]  Li Ku,et al.  Developmentally-programmed FMRP expression in oligodendrocytes: a potential role of FMRP in regulating translation in oligodendroglia progenitors. , 2003, Human molecular genetics.

[71]  W. Brown,et al.  Fragile X premutation tremor/ataxia syndrome: molecular, clinical, and neuroimaging correlates. , 2003, American journal of human genetics.

[72]  B. Oostra,et al.  The Fragile X Syndrome Protein FMRP Associates with BC1 RNA and Regulates the Translation of Specific mRNAs at Synapses , 2003, Cell.

[73]  M. Vila,et al.  Pathogenic role of glial cells in Parkinson's disease , 2003, Movement disorders : official journal of the Movement Disorder Society.

[74]  W. Brown,et al.  Fragile X premutation carriers: characteristic MR imaging findings of adult male patients with progressive cerebellar and cognitive dysfunction. , 2002, AJNR. American journal of neuroradiology.

[75]  Gerald M. Rubin,et al.  Drosophila Fragile X-Related Gene Regulates the MAP1B Homolog Futsch to Control Synaptic Structure and Function , 2001, Cell.

[76]  S. Warren,et al.  Reduced FMRP and increased FMR1 transcription is proportionally associated with CGG repeat number in intermediate-length and premutation carriers. , 2001, Human molecular genetics.

[77]  P. Hagerman,et al.  Transcription of the FMR1 gene in individuals with fragile X syndrome. , 2000, American journal of medical genetics.

[78]  B. Oostra,et al.  FMRP expression as a potential prognostic indicator in fragile X syndrome. , 1999, American journal of medical genetics.

[79]  A. Poustka,et al.  Fragile X syndrome without CCG amplification has an FMR1 deletion , 1992, Nature Genetics.

[80]  J. Sutcliffe,et al.  Variation of the CGG repeat at the fragile X site results in genetic instability: Resolution of the Sherman paradox , 1991, Cell.

[81]  Ben A. Oostra,et al.  Absence of expression of the FMR-1 gene in fragile X syndrome , 1991, Cell.

[82]  J. Sutcliffe,et al.  Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome , 1991, Cell.

[83]  J. Mandel,et al.  Instability of a 550-base pair DNA segment and abnormal methylation in fragile X syndrome , 1991, Science.

[84]  G. Turner,et al.  X-linked mental retardation associated with macro-orchidism. , 1975, Journal of medical genetics.

[85]  J. Bell,et al.  A PEDIGREE OF MENTAL DEFECT SHOWING SEX-LINKAGE , 1943, Journal of neurology and psychiatry.

[86]  Dalyir I. Pretto,et al.  Reduced EAAT1 and mGluR5 expression in the cerebellum of FMR1 premutation carriers with FXTAS , 2014 .

[87]  J. Hellings,et al.  IL1RAPL1 gene deletion as a cause of X-linked intellectual disability and dysmorphic features. , 2012, European journal of medical genetics.

[88]  P. Hagerman,et al.  Cognitive profile of fragile X premutation carriers with and without fragile X-associated tremor/ataxia syndrome. , 2008, Neuropsychology.

[89]  J Grigsby,et al.  Neuropathology of fragile X-associated tremor/ataxia syndrome (FXTAS). , 2006, Brain : a journal of neurology.

[90]  T. Godfrey,et al.  Elevated levels of FMR1 mRNA in carrier males: a new mechanism of involvement in the fragile-X syndrome. , 2000, American journal of human genetics.