Prediction and feature analysis of intron retention events in plant genome
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Meng Cai | Ying Cui | Chao Zhang | Chao Zhang | Ying Cui | Meng Cai
[1] Leo Breiman,et al. Random Forests , 2001, Machine Learning.
[2] Christopher B. Burge,et al. Maximum Entropy Modeling of Short Sequence Motifs with Applications to RNA Splicing Signals , 2004, J. Comput. Biol..
[3] K. Huse,et al. Non-EST based prediction of exon skipping and intron retention events using Pfam information , 2005, Nucleic acids research.
[4] K. Hornik,et al. Unbiased Recursive Partitioning: A Conditional Inference Framework , 2006 .
[5] Yanda Li,et al. Support Vector Machine Approach for Retained Introns Prediction Using Sequence Features , 2006, ISNN.
[6] M. Irimia,et al. Intron mis-splicing: no alternative? , 2008, Genome Biology.
[7] Achim Zeileis,et al. Conditional variable importance for random forests , 2008, BMC Bioinformatics.
[8] B. Frey,et al. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing , 2008, Nature Genetics.
[9] U. Leser,et al. Gene mention normalization and interaction extraction with context models and sentence motifs , 2008, Genome Biology.
[10] O. Jaillon,et al. Translational control of intron splicing in eukaryotes , 2008, Nature.
[11] C. Will,et al. The Spliceosome: Design Principles of a Dynamic RNP Machine , 2009, Cell.
[12] Junhyong Kim,et al. Cytoplasmic Intron Sequence-Retaining Transcripts Can Be Dendritically Targeted via ID Element Retrotransposons , 2011, Neuron.
[13] Yamile Marquez,et al. Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis , 2011, Nucleic acids research.
[14] Yamile Marquez,et al. Alternative splicing in plants – coming of age , 2012, Trends in plant science.
[15] V. Rocchi,et al. Intron retention regulates the expression of pectin methyl esterase inhibitor (Pmei) genes during wheat growth and development. , 2012, Plant biology.
[16] Yamile Marquez,et al. Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis , 2012, Genome research.
[17] M. Selbach,et al. Orchestrated Intron Retention Regulates Normal Granulocyte Differentiation , 2013, Cell.
[18] Alexander F. Palazzo,et al. ALREX‐elements and introns: two identity elements that promote mRNA nuclear export , 2013, Wiley interdisciplinary reviews. RNA.
[19] C. M. van der Weele,et al. Removal of retained introns regulates translation in the rapidly developing gametophyte of Marsilea vestita. , 2013, Developmental cell.
[20] Junchi Yan,et al. Predicting protein-RNA interaction amino acids using random forest based on submodularity subset selection , 2014, Comput. Biol. Chem..
[21] John W. S. Brown,et al. The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana , 2013, Nucleic acids research.
[22] A. Kornblihtt,et al. Let there be light: Regulation of gene expression in plants , 2014, RNA biology.
[23] C. Liang,et al. Comparative Analyses between Retained Introns and Constitutively Spliced Introns in Arabidopsis thaliana Using Random Forest and Support Vector Machine , 2014, PloS one.
[24] Miguel C. Teixeira,et al. Intron Retention in the 5′UTR of the Novel ZIF2 Transporter Enhances Translation to Promote Zinc Tolerance in Arabidopsis , 2014, PLoS genetics.
[25] K. Scholthof,et al. Genome-Wide Analysis of Alternative Splicing Landscapes Modulated during Plant-Virus Interactions in Brachypodium distachyon , 2015, Plant Cell.
[26] K. Hornik,et al. A Laboratory for Recursive Partytioning , 2015 .
[27] Yang Li,et al. GPCR-drug interactions prediction using random forest with drug-association-matrix-based post-processing procedure , 2016, Comput. Biol. Chem..
[28] Amy Y. M. Au,et al. Intron retention in mRNA: No longer nonsense , 2016, BioEssays : news and reviews in molecular, cellular and developmental biology.