Alterations in conformational topology and interaction dynamics caused by L418A mutation leads to activity loss of Mycobacterium tuberculosis isocitrate lyase.
暂无分享,去创建一个
Rohit Shukla | Harish Shukla | Timir Tripathi | T. Tripathi | Amit Sonkar | Amit Sonkar | R. Shukla | Harish Shukla | Timir Tripathi
[1] Berk Hess,et al. LINCS: A linear constraint solver for molecular simulations , 1997 .
[2] David G. Russell,et al. Characterization of Activity and Expression of Isocitrate Lyase in Mycobacterium avium andMycobacterium tuberculosis , 1999, Journal of bacteriology.
[3] Anastasia Baryshnikova,et al. Exploratory Analysis of Biological Networks through Visualization, Clustering, and Functional Annotation in Cytoscape. , 2016, Cold Spring Harbor protocols.
[4] T. Creighton,et al. Experimental studies of protein folding and unfolding. , 1978, Progress in biophysics and molecular biology.
[5] T. Darden,et al. Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems , 1993 .
[6] Rohit Shukla,et al. Distant Phe345 mutation compromises the stability and activity of Mycobacterium tuberculosis isocitrate lyase by modulating its structural flexibility , 2017, Scientific Reports.
[7] H. Berendsen,et al. Essential dynamics of proteins , 1993, Proteins.
[8] A. Sharma,et al. Isocitrate lyase: a potential target for anti-tubercular drugs. , 2013, Recent patents on inflammation & allergy drug discovery.
[9] J. Graham,et al. Identification of Mycobacterium tuberculosis RNAs synthesized in response to phagocytosis by human macrophages by selective capture of transcribed sequences (SCOTS). , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[10] Md. Sohail Akhtar,et al. Isocitrate lyase of Mycobacterium tuberculosis is inhibited by quercetin through binding at N-terminus. , 2015, International journal of biological macromolecules.
[11] T. Tripathi,et al. UDP-N-Acetylglucosamine enolpyruvyl transferase (MurA) of Acinetobacter baumannii (AbMurA): Structural and functional properties. , 2017, International journal of biological macromolecules.
[12] Charles C. David,et al. Principal component analysis: a method for determining the essential dynamics of proteins. , 2014, Methods in molecular biology.
[13] V. Hornak,et al. Comparison of multiple Amber force fields and development of improved protein backbone parameters , 2006, Proteins.
[14] David G. Russell,et al. Tuberculosis: What We Don’t Know Can, and Does, Hurt Us , 2010, Science.
[15] C. Nathan,et al. Isocitrate lyase mediates broad antibiotic tolerance in Mycobacterium tuberculosis , 2014, Nature Communications.
[16] K Schulten,et al. VMD: visual molecular dynamics. , 1996, Journal of molecular graphics.
[17] T. Tripathi,et al. A combined biochemical and computational studies of the rho-class glutathione s-transferase sll1545 of Synechocystis PCC 6803. , 2017, International journal of biological macromolecules.
[18] Ranjeet Kumar,et al. Mycobacterium tuberculosis isocitrate lyase (MtbIcl): Role of divalent cations in modulation of functional and structural properties , 2008, Proteins.
[19] Peter M. Kasson,et al. GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit , 2013, Bioinform..
[20] Arthur J. Olson,et al. AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading , 2009, J. Comput. Chem..
[21] John Mongan,et al. Interactive essential dynamics , 2004, J. Comput. Aided Mol. Des..
[22] Silvio C. E. Tosatto,et al. RING: networking interacting residues, evolutionary information and energetics in protein structures , 2011, Bioinform..
[23] Conrad C. Huang,et al. UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..
[24] Sujata Sharma,et al. Structure of isocitrate lyase, a persistence factor of Mycobacterium tuberculosis , 2000, Nature Structural Biology.
[25] A. Singh,et al. Insight into the structural flexibility and function of Mycobacterium tuberculosis isocitrate lyase. , 2015, Biochimie.