Super-resolution biomolecular crystallography with low-resolution data
暂无分享,去创建一个
[1] Ron Bose,et al. Mechanism of activation and inhibition of the HER4/ErbB4 kinase. , 2008, Structure.
[2] G N Murshudov,et al. Incorporation of prior phase information strengthens maximum-likelihood structure refinement. , 1998, Acta crystallographica. Section D, Biological crystallography.
[3] A. Brünger. Crystallographic refinement by simulated annealing. Application to a 2.8 A resolution structure of aspartate aminotransferase. , 1988, Journal of molecular biology.
[4] D. Lipman,et al. Rapid and sensitive protein similarity searches. , 1985, Science.
[5] M. Levitt,et al. Refinement of protein conformations using a macromolecular energy minimization procedure. , 1969, Journal of molecular biology.
[6] P. Bradley,et al. High-resolution structure prediction and the crystallographic phase problem , 2007, Nature.
[7] M. Thielges,et al. Design of a redox-linked active metal site: manganese bound to bacterial reaction centers at a site resembling that of photosystem II. , 2005, Biochemistry.
[8] S. Kazmirski,et al. Structural analysis of the inactive state of the Escherichia coli DNA polymerase clamp-loader complex. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[9] H. Hauptman,et al. A theory of phase determination for the four types of non-centrosymmetric space groups 1P222, 2P22, 3P12, 3P22 , 1956 .
[10] Michael Levitt,et al. Refinement of Large Structures by Simultaneous Minimization of Energy and R Factor , 1978 .
[11] A. Brünger,et al. Torsion angle dynamics: Reduced variable conformational sampling enhances crystallographic structure refinement , 1994, Proteins.
[12] H. Stark,et al. Structural insight into filament formation by mammalian septins. , 2007, Nature.
[13] Raimond B G Ravelli,et al. Structural insight into the inhibition of tubulin by vinca domain peptide ligands , 2008, EMBO reports.
[14] Adam Zemla,et al. LGA: a method for finding 3D similarities in protein structures , 2003, Nucleic Acids Res..
[15] D. Baker,et al. A Double S Shape Provides the Structural Basis for the Extraordinary Binding Specificity of Dscam Isoforms , 2008, Cell.
[16] M. Levitt,et al. Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease and lysozyme. , 1985, Journal of molecular biology.
[17] G. Bricogne,et al. A multisolution method of phase determination by combined maximization of entropy and likelihood. I. Theory, algorithms and strategy , 1990 .
[18] Tongqing Zhou,et al. Structural definition of a conserved neutralization epitope on HIV-1 gp120 , 2007, Nature.
[19] R J Read,et al. Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.
[20] Don C. Wiley,et al. Structure of an unliganded simian immunodeficiency virus gp120 core , 2005, Nature.
[21] H A Scheraga,et al. Minimization of polypeptide energy. I. Preliminary structures of bovine pancreatic ribonuclease S-peptide. , 1967, Proceedings of the National Academy of Sciences of the United States of America.
[22] David C. Richardson,et al. MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes , 2004, Nucleic Acids Res..
[23] P. Taylor,et al. Crystal structure of a Cbtx–AChBP complex reveals essential interactions between snake α‐neurotoxins and nicotinic receptors , 2005, The EMBO journal.
[24] Jianwei Miao,et al. Three-dimensional structure determination from a single view , 2009, Nature.
[25] A. Brunger. Crystallographic refinement by simulated annealing , 1988 .
[26] N. Kunishima,et al. Structural views of the ligand-binding cores of a metabotropic glutamate receptor complexed with an antagonist and both glutamate and Gd3+ , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[27] Michael Levitt,et al. Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution. , 2007, Structure.
[28] J. Skolnick,et al. TM-align: a protein structure alignment algorithm based on the TM-score , 2005, Nucleic acids research.
[29] F. Tama,et al. Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM. , 2004, Journal of structural biology.
[30] P. Loll,et al. Synthesis and use of iodinated nonsteroidal antiinflammatory drug analogs as crystallographic probes of the prostaglandin H2 synthase cyclooxygenase active site. , 1996, Biochemistry.
[31] R J Read,et al. Extending the limits of molecular replacement through combined simulated annealing and maximum-likelihood refinement. , 1999, Acta crystallographica. Section D, Biological crystallography.
[32] Fabiana Bahna,et al. Type II Cadherin Ectodomain Structures: Implications for Classical Cadherin Specificity , 2006, Cell.
[33] Tom Blundell,et al. The active site of aspartic proteinases , 1991, FEBS letters.
[34] Roger D Kornberg,et al. Structural Basis of Transcription: An RNA Polymerase II-TFIIB Cocrystal at 4.5 Angstroms , 2004, Science.
[35] A. Brunger. Version 1.2 of the Crystallography and NMR system , 2007, Nature Protocols.
[36] W. Delano. The PyMOL Molecular Graphics System , 2002 .
[37] T. Blundell,et al. Comparative protein modelling by satisfaction of spatial restraints. , 1993, Journal of molecular biology.
[38] V. Luzzati,et al. Traitement statistique des erreurs dans la determination des structures cristallines , 1952 .
[39] Krzysztof Palczewski,et al. Crystal structure of a photoactivated deprotonated intermediate of rhodopsin , 2006, Proceedings of the National Academy of Sciences.
[40] R. Huber,et al. Accurate Bond and Angle Parameters for X-ray Protein Structure Refinement , 1991 .
[41] R. Read,et al. Improved Structure Refinement Through Maximum Likelihood , 1996 .
[42] W E Moerner,et al. New directions in single-molecule imaging and analysis , 2007, Proceedings of the National Academy of Sciences.
[43] G M Crippen,et al. Minimization of polypeptide energy. X. A global search algorithm. , 1971, Archives of biochemistry and biophysics.
[44] M. Levitt. Protein folding by restrained energy minimization and molecular dynamics. , 1983, Journal of molecular biology.
[45] M. Levitt. Accurate modeling of protein conformation by automatic segment matching. , 1992, Journal of molecular biology.
[46] M. James,et al. Structure and refinement of penicillopepsin at 1.8 A resolution. , 1983, Journal of molecular biology.
[47] W. Weis,et al. Improved structures of full-length p97, an AAA ATPase: implications for mechanisms of nucleotide-dependent conformational change. , 2008, Structure.
[48] Stephen Corcoran,et al. A 7 µm mini-beam improves diffraction data from small or imperfect crystals of macromolecules , 2008, Acta crystallographica. Section D, Biological crystallography.
[49] D. Oesterhelt,et al. Inhibition of the fungal fatty acid synthase type I multienzyme complex , 2008, Proceedings of the National Academy of Sciences.
[50] M. Delarue,et al. On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[51] R Diamond,et al. On the use of normal modes in thermal parameter refinement: theory and application to the bovine pancreatic trypsin inhibitor. , 1990, Acta crystallographica. Section A, Foundations of crystallography.
[52] Ellis L. Reinherz,et al. Crystal structure of the human CD4 N-terminal two-domain fragment complexed to a class II MHC molecule , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[53] Wayne A. Hendrickson,et al. A restrained-parameter thermal-factor refinement procedure , 1980 .
[54] Holger Sondermann,et al. Structural Analysis of Autoinhibition in the Ras Activator Son of Sevenless , 2004, Cell.
[55] J. Tainer,et al. Supplemental Experimental Procedures Cloning and Recombinant Protein Production , 2022 .
[56] J. Engler,et al. Crystal structure of truncated human apolipoprotein A-I suggests a lipid-bound conformation. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[57] George M. Church,et al. A structure-factor least-squares refinement procedure for macromolecular structures using constrained and restrained parameters , 1977 .