Gene Expression Profile Analysis by DNA Microarrays

[1]  Christian A. Rees,et al.  Systematic variation in gene expression patterns in human cancer cell lines , 2000, Nature Genetics.

[2]  C. Pettaway Racial differences in the androgen/androgen receptor pathway in prostate cancer. , 1999, Journal of the National Medical Association.

[3]  J. Beckmann,et al.  A new dimension for the human genome project: towards comprehensive expression maps , 1997, Nature Genetics.

[4]  G. A. Whitmore,et al.  Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[5]  J. Hudson,et al.  In vivo gene expression profile analysis of human breast cancer progression. , 1999, Cancer research.

[6]  A. Thor,et al.  Loss of Heterozygosity in Normal Tissue Adjacent to Breast Carcinomas , 1996, Science.

[7]  R. Narayanan,et al.  Microarray-based expression profiling in prostate tumors. , 2000, In vivo.

[8]  S. Mok,et al.  Identification of differentially expressed genes from ovarian cancer cells by MICROMAX cDNA microarray system. , 2001, BioTechniques.

[9]  K. Miura,et al.  Quantitative assessment of DNA microarrays--comparison with Northern blot analyses. , 2001, Genomics.

[10]  Ronald W. Davis,et al.  Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. , 1999, Science.

[11]  N. Kohno,et al.  Association between expression of the MRP3 gene and exposure to platinum drugs in lung cancer , 2001, International journal of cancer.

[12]  David B. Krizman,et al.  The genetics of cancer—a 3D model , 1999, Nature Genetics.

[13]  J. Warrington,et al.  Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes. , 2000, Physiological genomics.

[14]  E. Kok,et al.  The application of DNA microarrays in gene expression analysis. , 2000, Journal of biotechnology.

[15]  L. Liotta,et al.  Barrett's esophagus: metaplastic cells with loss of heterozygosity at the APC gene locus are clonal precursors to invasive adenocarcinoma. , 1996, Cancer research.

[16]  U. Alon,et al.  Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[17]  M. Honda,et al.  Identification of differentially expressed genes in hepatocellular carcinoma with cDNA microarrays , 2001, Hepatology.

[18]  D. Botstein,et al.  Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[19]  S. Tsugane,et al.  Cytochrome P450 2E1 polymorphism in gastric cancer in Brazil: case-control studies of Japanese Brazilians and non-Japanese Brazilians. , 2000, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.

[20]  E. Wolski,et al.  Normalization strategies for cDNA microarrays. , 2000, Nucleic acids research.

[21]  S. Fields The future is function , 1997, Nature Genetics.

[22]  J. Braman,et al.  Small-sample total RNA purification: laser capture microdissection and cultured cell applications. , 2001, BioTechniques.

[23]  J. Mesirov,et al.  Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. , 1999, Science.

[24]  M. Eisen,et al.  Gene expression informatics —it's all in your mine , 1999, Nature Genetics.

[25]  F. Bertucci,et al.  Expression profiling: DNA arrays in many guises. , 1999, BioEssays : news and reviews in molecular, cellular and developmental biology.

[26]  N. Gibran,et al.  COMPARISON OF NORMAL HUMAN SKIN GENE EXPRESSION USING CDNA MICROARRAYS , 2001, Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society.

[27]  W. Dalton,et al.  Effects of ethanol and paraformaldehyde on RNA yield and quality. , 1994, BioTechniques.

[28]  L. Stanton,et al.  Altered patterns of gene expression in response to myocardial infarction. , 2000, Circulation research.

[29]  J. Burgess,et al.  Gene Expression Studies Using Microarrays , 2001, Clinical and experimental pharmacology & physiology.

[30]  R. Dummer,et al.  Coexpression of CD40 and CD40 ligand in cutaneous T-cell lymphoma (mycosis fungoides). , 2001, Cancer research.

[31]  K. Kinzler,et al.  Serial Analysis of Gene Expression , 1995, Science.

[32]  W. Wilson,et al.  Gene expression profiling of lymphomas , 2001, Current oncology reports.

[33]  M. Abdellatif Leading the way using microarray: a more comprehensive approach for discovery of gene expression patterns. , 2000, Circulation research.

[34]  K. Nakayama,et al.  Expression of the Endostatin gene in epithelial ovarian cancer. , 2001, Clinical cancer research : an official journal of the American Association for Cancer Research.

[35]  S. Kauffman,et al.  Cellular clocks and oscillators. , 1984, International review of cytology.

[36]  T R Zacharewski,et al.  Assessment of clone identity and sequence fidelity for 1189 IMAGE cDNA clones. , 2001, Nucleic acids research.

[37]  R. DuBois,et al.  Detection of differentially expressed genes in human colon carcinoma cells treated with a selective COX-2 inhibitor , 2001, Oncogene.

[38]  P. Raval Qualitative and quantitative determination of mRNA. , 1994, Journal of pharmacological and toxicological methods.

[39]  N. Sampas,et al.  Molecular classification of cutaneous malignant melanoma by gene expression profiling , 2000, Nature.

[40]  D. Lockhart,et al.  Analysis of gene expression profiles in normal and neoplastic ovarian tissue samples identifies candidate molecular markers of epithelial ovarian cancer. , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[41]  Robert C. Thompson,et al.  The “chip” as a specific genetic tool , 2000, Biological Psychiatry.

[42]  M. Ogawa,et al.  Frequent p53 mutation in brain (fetal)-type glycogen phosphorylase positive foci adjacent to human ‘de novo’olorectal carcinomas , 2001, British Journal of Cancer.

[43]  C. Li,et al.  Analyzing high‐density oligonucleotide gene expression array data , 2001, Journal of cellular biochemistry.

[44]  L. Hood,et al.  Monitoring gene expression profile changes in ovarian carcinomas using cDNA microarray. , 1999, Gene.

[45]  Timothy B. Stockwell,et al.  The Sequence of the Human Genome , 2001, Science.

[46]  J. Minna,et al.  Allele-specific chromosome 3p deletions occur at an early stage in the pathogenesis of lung carcinoma. , 1995, JAMA.

[47]  Alison Abbott,et al.  Can researchers find recipe for proteins and chips? , 1999, Nature.

[48]  D. Bowtell,et al.  Options available — from start to finish — for obtaining expression data by microarray , 1999, Nature Genetics.

[49]  Ronald W. Davis,et al.  A genome-wide transcriptional analysis of the mitotic cell cycle. , 1998, Molecular cell.

[50]  D S Grove,et al.  Quantitative real-time polymerase chain reaction for the core facility using TaqMan and the Perkin-Elmer/Applied Biosystems Division 7700 Sequence Detector. , 1999, Journal of biomolecular techniques : JBT.

[51]  T. Takagi,et al.  Alterations of gene expression during colorectal carcinogenesis revealed by cDNA microarrays after laser-capture microdissection of tumor tissues and normal epithelia. , 2001, Cancer research.

[52]  T. Saida Recent advances in melanoma research. , 2001, Journal of dermatological science.

[53]  M. Xiong,et al.  Recursive partitioning for tumor classification with gene expression microarray data , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[54]  S. Reed,et al.  Identification of differentially expressed genes in human prostate cancer using subtraction and microarray. , 2000, Cancer research.

[55]  M. Ringnér,et al.  Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks , 2001, Nature Medicine.

[56]  L. Liotta,et al.  Laser capture microdissection. , 2006, Methods in molecular biology.

[57]  E. Schuetz,et al.  Isolation of rat pgp3 cDNA: evidence for gender and zonal regulation of expression in the liver. , 1994, Biochimica et biophysica acta.

[58]  Roger E Bumgarner,et al.  Interaction of pseudomonas aeruginosa with epithelial cells: identification of differentially regulated genes by expression microarray analysis of human cDNAs. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[59]  Jiasen Lu,et al.  Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays. , 2000, Nucleic acids research.

[60]  J. Claverie Computational methods for the identification of differential and coordinated gene expression. , 1999, Human molecular genetics.

[61]  A. Pardee,et al.  Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. , 1992, Science.

[62]  D. Smith,et al.  Prostate tumours from an Asian population: examination of bax, bcl-2, p53 and ras and identification of bax as prognostic marker , 2000, British Journal of Cancer.