Avoiding tipping points in fisheries management through Gaussian process dynamic programming

Model uncertainty and limited data are fundamental challenges to robust management of human intervention in a natural system. These challenges are acutely highlighted by concerns that many ecological systems may contain tipping points, such as Allee population sizes. Before a collapse, we do not know where the tipping points lie, if they exist at all. Hence, we know neither a complete model of the system dynamics nor do we have access to data in some large region of state space where such a tipping point might exist. We illustrate how a Bayesian non-parametric approach using a Gaussian process (GP) prior provides a flexible representation of this inherent uncertainty. We embed GPs in a stochastic dynamic programming framework in order to make robust management predictions with both model uncertainty and limited data. We use simulations to evaluate this approach as compared with the standard approach of using model selection to choose from a set of candidate models. We find that model selection erroneously favours models without tipping points, leading to harvest policies that guarantee extinction. The Gaussian process dynamic programming (GPDP) performs nearly as well as the true model and significantly outperforms standard approaches. We illustrate this using examples of simulated single-species dynamics, where the standard model selection approach should be most effective and find that it still fails to account for uncertainty appropriately and leads to population crashes, while management based on the GPDP does not, as it does not underestimate the uncertainty outside of the observed data.

[1]  William J. Reed,et al.  Optimal escapement levels in stochastic and deterministic harvesting models , 1979 .

[2]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[3]  C. Walters,et al.  Optimal harvesting with imprecise parameter estimates , 1982 .

[4]  David B. Dunson,et al.  Bayesian Data Analysis , 2010 .

[5]  M. Mcallister,et al.  Bayesian stock assessment: a review and example application using the logistic model , 1998 .

[6]  Yihui Xie,et al.  Dynamic Documents with R and knitr , 2015 .

[7]  Andrew J. Tyre,et al.  Accounting for parametric uncertainty in Markov decision processes , 2013 .

[8]  Stefan A H Geritz,et al.  Mathematical ecology: why mechanistic models? , 2012, Journal of mathematical biology.

[9]  M. Mangel The Theoretical Biologist's Toolbox: Quantitative Methods for Ecology and Evolutionary Biology , 2006 .

[10]  Masatoshi Sugeno,et al.  A semiparametric Bayesian method for detecting Allee effects. , 2013, Ecology.

[11]  A Precautionary Tale of Uncertain Tail Fattening , 2012 .

[12]  C. Clark,et al.  Dynamic Modeling in Behavioral Ecology , 2019 .

[13]  Colin W. Clark,et al.  On uncertain renewable resource stocks: Optimal harvest policies and the value of stock surveys , 1986 .

[14]  S. Carpenter,et al.  Decision-making under great uncertainty: environmental management in an era of global change. , 2011, Trends in ecology & evolution.

[15]  W. Hanemann,et al.  Fishery Management Under Multiple Uncertainty , 2004 .

[16]  R. Hilborn,et al.  The Ecological Detective: Confronting Models with Data , 1997 .

[17]  Nicholas Brozović,et al.  Optimal Management of an Ecosystem with an Unknown Threshold , 2011 .

[18]  Carl E. Rasmussen,et al.  Gaussian processes for machine learning , 2005, Adaptive computation and machine learning.

[19]  Anastasios Xepapadeas,et al.  Pollution Control with Uncertain Stock Dynamics: When, and How, to be Precautious , 2012 .

[20]  Kotaro Ono,et al.  A Bayesian approach to identifying and compensating for model misspecification in population models. , 2014, Ecology.

[21]  S. Munch,et al.  Combining a Bayesian nonparametric method with a hierarchical framework to estimate individual and temporal variation in growth , 2012 .

[22]  A. Rosenberg,et al.  Population Dynamics of Exploited Fish Stocks at Low Population Levels , 1995, Science.

[23]  S. Carpenter,et al.  Catastrophic shifts in ecosystems , 2001, Nature.

[24]  Deborah Allen,et al.  Infusing active learning into the large-enrollment biology class: seven strategies, from the simple to complex. , 2005, Cell biology education.

[25]  S. Munch,et al.  A semiparametric Bayesian approach to estimating maximum reproductive rates at low population sizes. , 2013, Ecological applications : a publication of the Ecological Society of America.

[26]  V. Dakos,et al.  Living dangerously on borrowed time during slow, unrecognized regime shifts. , 2013, Trends in ecology & evolution.

[27]  Carl J. Walters,et al.  ECOLOGICAL OPTIMIZATION AND ADAPTIVE MANAGEMENT , 1978 .

[28]  C. Clark,et al.  Dynamic State Variable Models in Ecology , 2000 .

[29]  Marc Mangel,et al.  Stochastic Dynamic Programming Illuminates the Link Between Environment, Physiology, and Evolution , 2015, Bulletin of mathematical biology.

[30]  D. Parkinson,et al.  Bayesian Methods in Cosmology: Model selection and multi-model inference , 2009 .

[31]  Colin W. Clark,et al.  Management of Multispecies Fisheries , 1979, Science.

[32]  H Scottgordon The economic theory of a common-property resource: The fishery , 1991 .

[33]  Marc Mangel,et al.  Bayesian nonparametric analysis of stock- recruitment relationships , 2005 .

[34]  Ioan Fazey,et al.  Integrating resilience thinking and optimisation for conservation. , 2009, Trends in ecology & evolution.

[35]  M. Mangel,et al.  A unified treatment of top-down and bottom-up control of reproduction in populations , 2005 .

[36]  Agathe Girard,et al.  Dynamic systems identification with Gaussian processes , 2005 .

[37]  S. Carpenter,et al.  Early-warning signals for critical transitions , 2009, Nature.

[38]  Byron K. Williams,et al.  Uncertainty, learning, and the optimal management of wildlife , 2001, Environmental and Ecological Statistics.

[39]  J. Gascoigne,et al.  Allee Effects in Ecology and Conservation , 2008 .

[40]  C. Gardiner Stochastic Methods: A Handbook for the Natural and Social Sciences , 2009 .

[41]  J. Roughgarden,et al.  Why fisheries collapse and what to do about it. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[42]  Catherine A Calder,et al.  Accounting for uncertainty in ecological analysis: the strengths and limitations of hierarchical statistical modeling. , 2009, Ecological applications : a publication of the Ecological Society of America.

[43]  A. Brix Bayesian Data Analysis, 2nd edn , 2005 .

[44]  Alan Hastings,et al.  Process-based models are required to manage ecological systems in a changing world , 2013 .

[45]  Lucile Marescot,et al.  Complex decisions made simple: a primer on stochastic dynamic programming , 2013 .