论文信息 - De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data - 字舞流文

De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data

Steven J. M. Jones | E. Mardis | I. Birol | M. Marra | Gordon Robertson | M. Hirst | Nancy Y. Liao | R. Holt | J. Bohlmann | T. R. Docking | D. Platt | R. Hamelin | Simon K. Chan | R. Docking | C. Breuil | M. Seidel | S. Diguistini | S. Chan | Michael A. Seidel | Steven J. M. Jones

[1] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.

[2] Steven J. M. Jones,et al. FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology , 2008, Bioinform..

[3] H. Sandermann,et al. A simple and efficient protocol for isolation of high molecular weight DNA from filamentous fungi, fruit bodies, and infected plant tissues. , 1992, Nucleic acids research.

[4] Steven J. M. Jones,et al. Circos: an information aesthetic for comparative genomics. , 2009, Genome research.

[5] Steven J. M. Jones,et al. Abyss: a Parallel Assembler for Short Read Sequence Data Material Supplemental Open Access , 2022 .

[6] Cathryn J. Rehmeyer,et al. The genome sequence of the rice blast fungus Magnaporthe grisea , 2005, Nature.

[7] Burkhard Morgenstern,et al. Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources , 2006, BMC Bioinformatics.

[8] Keith Bradnam,et al. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes , 2007, Bioinform..

[9] C. Nusbaum,et al. ALLPATHS: de novo assembly of whole-genome shotgun microreads. , 2008, Genome research.

[10] E. Mauceli,et al. The genome sequence of the filamentous fungus Neurospora crassa , 2003, Nature.

[11] James R. Knight,et al. Genome sequencing in microfabricated high-density picolitre reactors , 2005, Nature.

[12] Susan M. Huse,et al. Accuracy and quality of massively parallel DNA pyrosequencing , 2007, Genome Biology.

[13] R. Durbin,et al. Mapping Quality Scores Mapping Short Dna Sequencing Reads and Calling Variants Using P

[14] C. Breuil,et al. Pathogenicity of Leptographium longiclavatum associated with Dendroctonus ponderosae to Pinus contorta , 2006 .

[15] Steven J. M. Jones,et al. Generation and annotation of lodgepole pine and oleoresin-induced expressed sequences from the blue-stain fungus Ophiostoma clavigerum, a Mountain Pine Beetle-associated pathogen. , 2007, FEMS microbiology letters.

[16] C. Nusbaum,et al. Quality scores and SNP detection in sequencing-by-synthesis systems. , 2008, Genome research.

[17] René L. Warren,et al. Assembling millions of short DNA sequences using SSAKE , 2006, Bioinform..

[18] P. Green,et al. Consed: a graphical tool for sequence finishing. , 1998, Genome research.