Application of proteomics in asthma research

Bronchial asthma is caused by allergic airway inflammation, resulting in reversible airway obstruction, characterized by airway hyper-responsiveness, bronchoconstriction, increased mucus secretion and an increase in lung vessel permeability. The pathophysiological changes in asthma have been attributed to the altered expression of biologically plausible proteins associated with transcriptional pathways, inflammatory mediators, chemokines, cytokines, apoptosis and cell proliferation. Such multifactorial diseases characteristically involve an interplay of many genetic variations of molecular and biochemical pathways and their interactions with environmental factors. The complex nature of the asthma phenotype, together with genetic heterogeneity and environmental influences, has made it difficult to uncover the aspects that underlie this common disease. Recently, genomic and proteomic technologies have been developed to identify associations between genes, proteins and disease. This approach, called ‘omics biology’, aims to recognize early onset of disease, institute preventive treatment and identify new molecular targets for novel drugs in multifactorial diseases. This article reviews examples of how proteomic technology can be used to find asthma marker proteins (from the cell model to clinical samples). Identification of protein changes in different stages of asthma could provide further insights into the complex molecular mechanisms involved in this disease. These studies provide new insights for finding novel pathological mediators and biomarkers of asthma.

[1]  M. Schlaak,et al.  Grass group I allergens (beta-expansins) are novel, papain-related proteinases. , 1999, European journal of biochemistry.

[2]  T. Reiss,et al.  A placebo-controlled, dose-ranging study of montelukast, a cysteinyl leukotriene-receptor antagonist. Montelukast Asthma Study Group. , 1998, The Journal of allergy and clinical immunology.

[3]  A. Szczeklik,et al.  The cyclooxygenase theory of aspirin-induced asthma. , 1990, The European respiratory journal.

[4]  P. Ho,et al.  Asthma, allergy, and atopy in three south-east Asian populations. , 1994, Thorax.

[5]  Douglas J. H. Olson,et al.  Proteomic analysis of tomato (Lycopersicon esculentum) pollen. , 2007, Journal of experimental botany.

[6]  The Effect of Maternal Asthma on Placental and Cord Blood Protein Profiles , 2005, The Journal of the Society for Gynecologic Investigation: JSGI.

[7]  T. Reiss,et al.  Montelukast, a potent leukotriene receptor antagonist, causes dose-related improvements in chronic asthma. Montelukast Asthma Study Group. , 1998, The European respiratory journal.

[8]  D. Strachan,et al.  Trends in prevalence of symptoms of asthma, hay fever, and eczema in 12-14 year olds in the British Isles, 1995-2002: questionnaire survey , 2004, BMJ : British Medical Journal.

[9]  A. Nel,et al.  Use of a fluorescent phosphoprotein dye to characterize oxidative stress‐induced signaling pathway components in macrophage and epithelial cultures exposed to diesel exhaust particle chemicals , 2005, Electrophoresis.

[10]  A. Szczeklik,et al.  Relationship of inhibition of prostaglandin biosynthesis by analgesics to asthma attacks in aspirin-sensitive patients. , 1975, British medical journal.

[11]  G. Hook,et al.  Pulmonary alveolar proteinosis: analysis of airway and alveolar proteins. , 1979, The American review of respiratory disease.

[12]  S. Bortenschlager,et al.  Altering airborne pollen concentrations due to the Global Warming. A comparative analysis of airborne pollen records from Innsbruck and Obergurgl (Austria) for the period 1980–2001 , 2005 .

[13]  E. Mcqueen The prevalence of asthma. , 1995, The New Zealand medical journal.

[14]  G. Marko‐Varga,et al.  Human bronchoalveolar lavage: Biofluid analysis with special emphasis on sample preparation , 2003, Proteomics.

[15]  C. Picado,et al.  Aspirin‐intolerant asthma: role of cyclo‐oxygenase enzymes , 2002, Allergy.

[16]  Sung‐Min Ahn,et al.  Body fluid proteomics: Prospects for biomarker discovery , 2007, Proteomics. Clinical applications.

[17]  D. Postma,et al.  Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction , 2009, Nature Genetics.

[18]  M. Samter,et al.  Concerning the nature of intolerance to aspirin. , 1967, The Journal of allergy.

[19]  J. Toogood High-dose inhaled steroid therapy for asthma. , 1989, The Journal of allergy and clinical immunology.

[20]  Ervin Valk,et al.  Changes in the proteome of human bronchial epithelial cells following stimulation with leucotriene E4 and transforming growth factor‐β1 , 2009, Respirology.

[21]  Choon-Sik Park,et al.  A disintegrin and metalloproteinase 33 protein in patients with asthma: Relevance to airflow limitation. , 2006, American journal of respiratory and critical care medicine.

[22]  R. Stockley,et al.  Validation of assays for inflammatory mediators in sputum. , 2000, The European respiratory journal.

[23]  C. Ober,et al.  Asthma genetics 2006: the long and winding road to gene discovery , 2006, Genes and Immunity.

[24]  L Hendeles,et al.  Montelukast, a leukotriene-receptor antagonist, for the treatment of mild asthma and exercise-induced bronchoconstriction. , 1998, The New England journal of medicine.

[25]  Clifford P Weisel,et al.  Assessing exposure to air toxics relative to asthma. , 2002, Environmental health perspectives.

[26]  E. Bargagli,et al.  Proteomic analysis in interstitial lung diseases: a review , 2009, Current opinion in pulmonary medicine.

[27]  S. Salvi,et al.  Aspirin and asthma. , 2000, Chest.

[28]  A. Jang,et al.  Asp–Tyr–Leu–Lys tetrapeptide inhibits airway inflammation in toluene‐2,4‐diisocyanate‐induced asthma mice , 2008, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.

[29]  R. Dockhorn,et al.  Montelukast, a once-daily leukotriene receptor antagonist, in the treatment of chronic asthma: a multicenter, randomized, double-blind trial. Montelukast Clinical Research Study Group. , 1998, Archives of internal medicine.

[30]  T. Xia,et al.  Toxic Potential of Materials at the Nanolevel , 2006, Science.

[31]  A. Petersen,et al.  Properties of group I allergens from grass pollen and their relation to cathepsin B, a member of the C1 family of cysteine proteinases. , 2002, European journal of biochemistry.

[32]  C. Pope,et al.  Acute effects of PM10 pollution on pulmonary function of smokers with mild to moderate chronic obstructive pulmonary disease. , 1993, The American review of respiratory disease.

[33]  T. Nicolai,et al.  Prevalence of asthma and atopy in two areas of West and East Germany. , 1994, American journal of respiratory and critical care medicine.

[34]  S. Lau,et al.  Interactions between genes and environmental factors in asthma and atopy: new developments , 2001, Respiratory research.

[35]  Lauren Cohn,et al.  Asthma: mechanisms of disease persistence and progression. , 2004, Annual review of immunology.

[36]  L. Wehenkel,et al.  Biomarker discovery in asthma‐related inflammation and remodeling , 2009, Proteomics.

[37]  P. Forsythe,et al.  Should we target allergen protease activity to decrease the burden of allergic airway inflammation? , 2008, Inflammation & allergy drug targets.

[38]  M. Schlaak,et al.  Grass group I allergens (β‐expansins) are novel, papain‐relatedproteinases , 1999 .

[39]  B. Ståhlbom,et al.  Newly identified proteins in human nasal and bronchoalveolar lavage fluids: Potential biomedical and clinical applications , 1999, Electrophoresis.

[40]  S. M. Nagy Clinical and Allergic Evaluation of the Patient with Bronchial Asthma , 2001 .

[41]  S. Uh,et al.  Role of lung apolipoprotein A-I in idiopathic pulmonary fibrosis: antiinflammatory and antifibrotic effect on experimental lung injury and fibrosis. , 2010, American journal of respiratory and critical care medicine.

[42]  Z. Werb,et al.  Proteomic Identification of In Vivo Substrates for Matrix Metalloproteinases 2 and 9 Reveals a Mechanism for Resolution of Inflammation1 , 2006, The Journal of Immunology.

[43]  D. Porteous,et al.  Sputum proteomics in inflammatory and suppurative respiratory diseases. , 2008, American journal of respiratory and critical care medicine.

[44]  Jing Zhao,et al.  Increased lungkine and chitinase levels in allergic airway inflammation: A proteomics approach , 2005, Proteomics.

[45]  H. Boezen,et al.  Genome-wide association studies: what do they teach us about asthma and chronic obstructive pulmonary disease? , 2009, Proceedings of the American Thoracic Society.

[46]  C. Emanuelsson,et al.  The identification of allergen proteins in sugar beet (Beta vulgaris) pollen causing occupational allergy in greenhouses , 2008, Clinical and molecular allergy : CMA.

[47]  J. Park,et al.  Plasma protein profiles in early asthmatic responses to inhalation allergen challenge , 2009, Allergy.

[48]  A. Becker Primary prevention of allergy and asthma is possible , 2005, Clinical reviews in allergy & immunology.

[49]  C. Brightling,et al.  The reclassification of asthma based on subphenotypes , 2007, Current opinion in allergy and clinical immunology.

[50]  H. Shin,et al.  Association between colony-stimulating factor 1 receptor gene polymorphisms and asthma risk , 2010, Human Genetics.

[51]  R. Alm,et al.  Proteomic variation is as large within as between strawberry varieties. , 2007, Journal of proteome research.

[52]  M. Sanak,et al.  Genetic mechanisms in aspirin-induced asthma. , 2000, American journal of respiratory and critical care medicine.

[53]  L. Dubé,et al.  Benefits from adding the 5-lipoxygenase inhibitor zileuton to conventional therapy in aspirin-intolerant asthmatics. , 1998, American journal of respiratory and critical care medicine.

[54]  Hua Liu,et al.  Increased RhoGDI2 and peroxiredoxin 5 levels in asthmatic murine model of beta2-adrenoceptor desensitization: a proteomics approach. , 2008, Chinese medical journal.

[55]  C. Robertson,et al.  Asthma prevalence in Melbourne schoolchildren: have we reached the peak? , 2004, The Medical journal of Australia.

[56]  Meiying Wang,et al.  Use of Proteomics to Demonstrate a Hierarchical Oxidative Stress Response to Diesel Exhaust Particle Chemicals in a Macrophage Cell Line* , 2003, Journal of Biological Chemistry.

[57]  Rakesh K. Kumar,et al.  Mass spectrometric analysis of electrophoretically separated allergens and proteases in grass pollen diffusates , 2003, Respiratory research.

[58]  B. Nicholas,et al.  Induced sputum: a window to lung pathology. , 2009, Biochemical Society transactions.

[59]  M. Kool,et al.  Lung proteome alterations in a mouse model for nonallergic asthma , 2003, Proteomics.

[60]  E. Israel,et al.  Issues in the use of inhaled glucocorticoids. The Asthma Clinical Research Network. , 1996, American journal of respiratory and critical care medicine.

[61]  Myung-Hwa Cha,et al.  Proteomic Identification of Macrophage Migration-inhibitory Factor upon Exposure to TiO2 Particles* , 2007, Molecular & Cellular Proteomics.

[62]  Delphine A. Lacorre,et al.  IL-33, the IL-1-like cytokine ligand for ST2 receptor, is a chromatin-associated nuclear factor in vivo , 2007, Proceedings of the National Academy of Sciences.

[63]  William W Busse,et al.  Effects of early intervention with inhaled budesonide on lung function in newly diagnosed asthma. , 2006, Chest.

[64]  S. Uh,et al.  Factors influencing the responsiveness to inhaled glucocorticoids of patients with moderate-to-severe asthma. , 2005, Chest.

[65]  Choon-Sik Park,et al.  Proteomic Analysis of Differently Expressed Proteins in a Mouse Model for Allergic Asthma , 2005, Journal of Korean medical science.

[66]  D. Nielson,et al.  Topical lidocaine exaggerates laryngomalacia during flexible bronchoscopy. , 2000, American journal of respiratory and critical care medicine.

[67]  S. Holgate,et al.  Overexpression of leukotriene C4 synthase in bronchial biopsies from patients with aspirin-intolerant asthma. , 1998, The Journal of clinical investigation.

[68]  R. Pauwels,et al.  GLOBAL STRATEGY FOR ASTHMA MANAGEMENT AND PREVENTION , 1996 .

[69]  P. Pignatti Trends in pharmacogenomics of drugs used in the treatment of asthma. , 2004, Pharmacological research.

[70]  S. Kalkhof,et al.  Proteome changes in human bronchoalveolar cells following styrene exposure indicate involvement of oxidative stress in the molecular‐response mechanism , 2009, Proteomics.

[71]  T. Frei,et al.  Climate change and its impact on birch pollen quantities and the start of the pollen season an example from Switzerland for the period 1969–2006 , 2008, International journal of biometeorology.

[72]  K. Yoshizato,et al.  Two-Dimensional IgE-Binding Spectrum of Japanese Cedar (Cryptomeria japonica) Pollen Allergens , 2004, International Archives of Allergy and Immunology.

[73]  Choon-Sik Park,et al.  Complement C3a and C4a increased in plasma of patients with aspirin-induced asthma. , 2006, American journal of respiratory and critical care medicine.

[74]  B. Nicholas,et al.  Shotgun proteomic analysis of human‐induced sputum , 2006, Proteomics.

[75]  Ruddy Wattiez,et al.  Human bronchoalveolar lavage fluid: Two‐dimensional gel electrophoresis, amino acid microsequencing and identification of major proteins , 1999, Electrophoresis.

[76]  I. Kim,et al.  Allergen‐induced proteolytic cleavage of annexin‐1 and activation of cytosolic phospholipase A2 in the lungs of a mouse model of asthma , 2004, Proteomics.

[77]  B. Sastre,et al.  Allergenicity and cross‐reactivity of Senecio pollen: identification of novel allergens using the immunoproteomics approach , 2008, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.

[78]  N. Pedemonte,et al.  Gelsolin secretion in interleukin-4-treated bronchial epithelia and in asthmatic airways. , 2005, American journal of respiratory and critical care medicine.

[79]  I. Hall,et al.  Genetics and pulmonary medicine: asthma , 1999, Thorax.

[80]  S. Hazen,et al.  Nitrotyrosine Proteome Survey in Asthma Identifies Oxidative Mechanism of Catalase Inactivation1 , 2006, The Journal of Immunology.

[81]  R. Kishikawa,et al.  [Long-term study of airborne allergic pollen count, C. Japonica and cupressaceae in Japan]. , 2001, Arerugi = [Allergy].

[82]  S. Holgate,et al.  Antileukotriene therapy. Future directions. , 2000, American journal of respiratory and critical care medicine.

[83]  Stephen C Lazarus,et al.  Banks CORTICOSTEROIDS FOR PERSISTENT ASTHMA SIGNIFICANT VARIABILITY IN RESPONSE TO INHALED Services , 2022 .

[84]  Gonçalo R. Abecasis,et al.  Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma , 2007, Nature.

[85]  S. Wenzel Asthma: defining of the persistent adult phenotypes , 2006, The Lancet.

[86]  R. Valenta,et al.  Characterization of Wild-Type Recombinant Bet v 1a as a Candidate Vaccine against Birch Pollen Allergy , 2005, International Archives of Allergy and Immunology.

[87]  G. Roh,et al.  Proteome analysis of differential protein expression in allergen‐induced asthmatic mice lung after dexamethasone treatment , 2004, Proteomics.

[88]  Arsi T Rosengren,et al.  Proteome profiling of interleukin‐12 treated human T helper cells , 2005, Proteomics.