Helicases: amino acid sequence comparisons and structure-function relationships

[1]  P. Chambon,et al.  DNA repair helicase: a component of BTF2 (TFIIH) basic transcription factor. , 1993, Science.

[2]  A. Sancar,et al.  Molecular mechanism of transcription-repair coupling. , 1993, Science.

[3]  I. Mian.  Sequence similarities between cell regulation factors, heat shock proteins and RNA helicases. , 1993, Trends in biochemical sciences.

[4]  E. Koonin.  Escherichia coli dinG gene encodes a putative DNA helicase related to a group of eukaryotic helicases including Rad3 protein. , 1993, Nucleic acids research.

[5]  C. Sander,et al.  Prokaryotic members of a new family of putative helicases with similarity to transcription activator SNF2. , 1993, Journal of molecular biology.

[6]  S. West,et al.  RuvA and RuvB proteins of Escherichia coli exhibit DNA helicase activity in vitro. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[7]  P Bork,et al.  An expanding family of helicases within the 'DEAD/H' superfamily. , 1993, Nucleic acids research.

[8]  T. Lohman.  Helicase-catalyzed DNA unwinding. , 1993, The Journal of biological chemistry.

[9]  I. Lehman,et al.  The herpes simplex virus type-1 origin binding protein. DNA helicase activity. , 1993, The Journal of biological chemistry.

[10]  W. Gelbart,et al.  A Drosophila model for xeroderma pigmentosum and Cockayne's syndrome: haywire encodes the fly homolog of ERCC3, a human excision repair gene , 1992, Cell.

[11]  J. Hoeijmakers,et al.  ERCC6, a member of a subfamily of putative helicases, is involved in Cockayne's syndrome and preferential repair of active genes , 1992, Cell.

[12]  E. Koonin.  A new group of putative RNA helicases. , 1992, Trends in biochemical sciences.

[13]  S. Shuman,et al.  Vaccinia virus RNA helicase: an essential enzyme related to the DE-H family of RNA-dependent NTPases. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[14]  D. Julin,et al.  Alteration by site-directed mutagenesis of the conserved lysine residue in the consensus ATP-binding sequence of the RecB protein of Escherichia coli. , 1992, Nucleic acids research.

[15]  S. Weller,et al.  The conserved helicase motifs of the herpes simplex virus type 1 origin-binding protein UL9 are important for function , 1992, Journal of virology.

[16]  B. Alberts,et al.  Overexpression, purification, sequence analysis, and characterization of the T4 bacteriophage dda DNA helicase. , 1992, The Journal of biological chemistry.

[17]  Robert E. Johnson,et al.  Saccharomyces cerevisiae RAD5-encoded DNA repair protein contains DNA helicase and zinc-binding sequence motifs and affects the stability of simple repetitive sequences in the genome , 1992, Molecular and cellular biology.

[18]  P Linder,et al.  ATP hydrolysis by initiation factor 4A is required for translation initiation in Saccharomyces cerevisiae. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[19]  D. Landsman,et al.  The yeast nuclear gene suv3 affecting mitochondrial post-transcriptional processes encodes a putative ATP-dependent RNA helicase. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[20]  Eugene V. Koonin,et al.  Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria , 1992, Nucleic Acids Res..

[21]  N. Sonenberg,et al.  Mutational analysis of a DEAD box RNA helicase: the mammalian translation initiation factor eIF‐4A. , 1992, The EMBO journal.

[22]  M. Challberg,et al.  Purification and characterization of UL9, the herpes simplex virus type 1 origin-binding protein , 1992, Journal of virology.

[23]  E J Louis,et al.  The structure and evolution of subtelomeric Y' repeats in Saccharomyces cerevisiae. , 1992, Genetics.

[24]  F. Z. Watts,et al.  Cloning and characterisation of the S. pombe rad15 gene, a homologue to the S. cerevisiae RAD3 and human ERCC2 genes. , 1992, Nucleic acids research.

[25]  J. Smith,et al.  The purified yeast pre‐mRNA splicing factor PRP2 is an RNA‐dependent NTPase. , 1992, The EMBO journal.

[26]  S. Biggar,et al.  The Schizosaccharomyces pombe rhp3+ gene required for DNA repair and cell viability is functionally interchangeable with the RAD3 gene of Saccharomyces cerevisiae. , 1992, Nucleic acids research.

[27]  H. Feldmann,et al.  Molecular analysis of yeast chromosome II between CMD1 and LYS2: The excision repair gene RAD16 located in this region belongs to a novel group of double‐finger proteins , 1992, Yeast.

[28]  T. Lohman,et al.  Allosteric Effects of Nucleotide Cofactors on Escherichia coli Rep Helicase&DNA Binding , 1992, Science.

[29]  P. Slonimski,et al.  NAM7 nuclear gene encodes a novel member of a family of helicases with a Zn-ligand motif and is involved in mitochondrial functions in Saccharomyces cerevisiae. , 1992, Journal of molecular biology.

[30]  K. Zavitz,et al.  ATPase-deficient mutants of the Escherichia coli DNA replication protein PriA are capable of catalyzing the assembly of active primosomes. , 1992, The Journal of biological chemistry.

[31]  E. Koonin,et al.  Vaccinia virus encodes four putative DNA and/or RNA helicases distantly related to each other. , 1992, The Journal of general virology.

[32]  M. Carlson,et al.  An essential Saccharomyces cerevisiae gene homologous to SNF2 encodes a helicase-related protein in a new family , 1992, Molecular and cellular biology.

[33]  J. Hurwitz,et al.  A new RNA helicase isolated from HeLa cells that catalytically translocates in the 3' to 5' direction. , 1992, The Journal of biological chemistry.

[34]  P. Boehmer,et al.  The RecB subunit of the Escherichia coli RecBCD enzyme couples ATP hydrolysis to DNA unwinding. , 1992, The Journal of biological chemistry.

[35]  E. Koonin,et al.  Autogenous translation regulation by Escherichia coli ATPase SecA may be mediated by an intrinsic RNA helicase activity of this protein , 1992, FEBS letters.

[36]  F. Korangy,et al.  A mutation in the consensus ATP-binding sequence of the RecD subunit reduces the processivity of the RecBCD enzyme from Escherichia coli. , 1992, The Journal of biological chemistry.

[37]  G. Schulz.  Binding of nucleotides by proteins , 1992, Current Biology.

[38]  P Linder,et al.  D‐E‐A‐D protein family of putative RNA helicases , 1992, Molecular microbiology.

[39]  F. Korangy,et al.  Alteration by site-directed mutagenesis of the conserved lysine residue in the ATP-binding consensus sequence of the RecD subunit of the Escherichia coli RecBCD enzyme. , 1992, The Journal of biological chemistry.

[40]  T. Lohman.  Escherichia coli DNA helicases: mechanisms of DNA unwinding , 1992, Molecular microbiology.

[41]  S. Weller,et al.  The six conserved helicase motifs of the UL5 gene product, a component of the herpes simplex virus type 1 helicase-primase, are essential for its function , 1992, Journal of virology.

[42]  E. Fanning,et al.  Structure and function of simian virus 40 large tumor antigen. , 1992, Annual review of biochemistry.

[43]  B. Blencowe,et al.  Bacterial DNA replication initiation factor priA is related to proteins belonging to the 'DEAD-box' family. , 1991, Nucleic acids research.

[44]  Wei Chen,et al.  Expression of minute virus of mice major nonstructural protein in insect cells: purification and identification of ATPase and helicase activities. , 1991, Virology.

[45]  P. Sung,et al.  DNA.RNA helicase activity of RAD3 protein of Saccharomyces cerevisiae. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[46]  E. Koonin,et al.  Endonuclease (R) subunits of type‐I and type‐III restriction‐modification enzymes contain a helicase‐like domain , 1991, FEBS letters.

[47]  G. Wengler,et al.  The carboxy-terminal part of the NS 3 protein of the West Nile flavivirus can be isolated as a soluble protein after proteolytic cleavage and represents an RNA-stimulated NTPase. , 1991, Virology.

[48]  M. Cashel,et al.  rhlB, a new Escherichia coli K-12 gene with an RNA helicase-like protein sequence motif, one of at least five such possible genes in a prokaryote. , 1991, The New biologist.

[49]  M. Bradley,et al.  Specific mutation of a regulatory site within the ATP-binding region of simian virus 40 large T antigen , 1991, Journal of virology.

[50]  P. Guilford,et al.  Triple gene block proteins of white clover mosaic potexvirus are required for transport. , 1991, Virology.

[51]  S. Efstathiou,et al.  Acquisition of the human adeno-associated virus type-2 rep gene by human herpesvirus type-6 , 1991, Nature.

[52]  F. Foury,et al.  PIF1: a DNA helicase in yeast mitochondria. , 1991, The EMBO journal.

[53]  A. Davidson,et al.  The nucleotide sequence of RNA 2 of barley yellow mosaic virus. , 1991, The Journal of general virology.

[54]  I. Lehman,et al.  Association of DNA helicase and primase activities with a subassembly of the herpes simplex virus 1 helicase-primase composed of the UL5 and UL52 gene products. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[55]  C. Guthrie,et al.  PRP16 is an RNA-dependent ATPase that interacts transiently with the spliceosome , 1991, Nature.

[56]  J. Abelson,et al.  Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes , 1991, Nature.

[57]  S. W. Matson.  DNA helicases of Escherichia coli. , 1991, Progress in nucleic acid research and molecular biology.

[58]  F. Spencer,et al.  The CHL 1 (CTF 1) gene product of Saccharomyces cerevisiae is important for chromosome transmission and normal cell cycle progression in G2/M. , 1990, The EMBO journal.

[59]  R. W. Jones,et al.  Identification of barley stripe mosaic virus genes involved in viral RNA replication and systemic movement. , 1990, The EMBO journal.

[60]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[61]  K. Nakayama,et al.  Escherichia coli RecQ protein is a DNA helicase. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[62]  B. Moss,et al.  Early transcription factor subunits are encoded by vaccinia virus late genes. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[63]  N. Muzyczka,et al.  The AAV origin binding protein Rep68 is an ATP-dependent site-specific endonuclease with DNA helicase activity , 1990, Cell.

[64]  L. Thompson,et al.  ERCC2: cDNA cloning and molecular characterization of a human nucleotide excision repair gene with high homology to yeast RAD3. , 1990, The EMBO journal.

[65]  J. Dolan,et al.  Transcription termination factor rho has three distinct structural domains. , 1990, The Journal of biological chemistry.

[66]  S. Broyles,et al.  Vaccinia virus gene encoding a component of the viral early transcription factor , 1990, Journal of virology.

[67]  E. Koonin,et al.  A new superfamily of putative NTP‐binding domains encoded by genomes of small DNA and RNA viruses , 1990, FEBS letters.

[68]  N. Sonenberg,et al.  Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F , 1990, Molecular and cellular biology.

[69]  J. Kahn,et al.  Identification of the point mutations in two vaccinia virus nucleoside triphosphate phosphohydrolase I temperature-sensitive mutants and role of this DNA-dependent ATPase enzyme in virus gene expression. , 1990, Virology.

[70]  T. Lohman,et al.  DNA and nucleotide-induced conformational changes in the Escherichia coli Rep and helicase II (UvrD) proteins. , 1990, The Journal of biological chemistry.

[71]  J. Riechmann,et al.  RNA helicase: a novel activity associated with a protein encoded by a positive strand RNA virus. , 1990, Nucleic acids research.

[72]  E. Koonin,et al.  Viral proteins containing the purine NTP-binding sequence pattern. , 1989, Nucleic acids research.

[73]  J. Riechmann,et al.  Homologous potyvirus and flavivirus proteins belonging to a superfamily of helicase-like proteins. , 1989, Gene.

[74]  L. Grossman,et al.  Mutations in the Escherichia coli UvrB ATPase motif compromise excision repair capacity. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[75]  V. Blinov,et al.  Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. , 1989, Nucleic acids research.

[76]  L. Grossman,et al.  Characterization of the helicase activity of the Escherichia coli UvrAB protein complex. , 1989, The Journal of biological chemistry.

[77]  P. Slonimski,et al.  Birth of the D-E-A-D box , 1989, Nature.

[78]  T. Platt,et al.  Site-directed alterations in the ATP-binding domain of rho protein affect its activities as a termination factor. , 1988, The Journal of biological chemistry.

[79]  J. Hershey,et al.  An eIF-4A-like protein is a suppressor of an Escherichia coli mutant defective in 50S ribosomal subunit assembly , 1988, Nature.

[80]  P. Caron,et al.  Potential role of proteolysis in the control of UvrABC incision. , 1988, Nucleic acids research.

[81]  P. Sung,et al.  Mutation of lysine‐48 to arginine in the yeast RAD3 protein abolishes its ATPase and DNA helicase activities but not the ability to bind ATP. , 1988, The EMBO journal.

[82]  V. Blinov,et al.  A novel superfamily of nucleoside triphosphate‐binding motif containing proteins which are probably involved in duplex unwinding in DNA and RNA replication and recombination , 1988, FEBS Letters.

[83]  M. Glassy.  Creating hybridomas by electrofusion , 1988, Nature.

[84]  T. Hodgman,et al.  A new superfamily of replicative proteins , 1988, Nature.

[85]  V. Blinov,et al.  A conserved NTP-motif in putative helicases , 1988, Nature.

[86]  D. Lipman,et al.  Improved tools for biological sequence comparison. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[87]  I. Lehman,et al.  Photoaffinity labeling of the recBCD enzyme of Escherichia coli with 8-azidoadenosine 5'-triphosphate. , 1987, The Journal of biological chemistry.

[88]  T. Platt,et al.  Transcription termination factor rho is an RNA-DNA helicase , 1987, Cell.

[89]  K. Arai,et al.  Structural and functional studies of the dnaB protein using limited proteolysis. Characterization of domains for DNA-dependent ATP hydrolysis and for protein association in the primosome. , 1984, The Journal of biological chemistry.

[90]  J. Walker,et al.  Distantly related sequences in the alpha‐ and beta‐subunits of ATP synthase, myosin, kinases and other ATP‐requiring enzymes and a common nucleotide binding fold. , 1982, The EMBO journal.