Mediterranean diet intervention in overweight and obese subjects lowers plasma cholesterol and causes changes in the gut microbiome and metabolome independently of energy intake

Objectives This study aimed to explore the effects of an isocaloric Mediterranean diet (MD) intervention on metabolic health, gut microbiome and systemic metabolome in subjects with lifestyle risk factors for metabolic disease. Design Eighty-two healthy overweight and obese subjects with a habitually low intake of fruit and vegetables and a sedentary lifestyle participated in a parallel 8-week randomised controlled trial. Forty-three participants consumed an MD tailored to their habitual energy intakes (MedD), and 39 maintained their regular diets (ConD). Dietary adherence, metabolic parameters, gut microbiome and systemic metabolome were monitored over the study period. Results Increased MD adherence in the MedD group successfully reprogrammed subjects’ intake of fibre and animal proteins. Compliance was confirmed by lowered levels of carnitine in plasma and urine. Significant reductions in plasma cholesterol (primary outcome) and faecal bile acids occurred in the MedD compared with the ConD group. Shotgun metagenomics showed gut microbiome changes that reflected individual MD adherence and increase in gene richness in participants who reduced systemic inflammation over the intervention. The MD intervention led to increased levels of the fibre-degrading Faecalibacterium prausnitzii and of genes for microbial carbohydrate degradation linked to butyrate metabolism. The dietary changes in the MedD group led to increased urinary urolithins, faecal bile acid degradation and insulin sensitivity that co-varied with specific microbial taxa. Conclusion Switching subjects to an MD while maintaining their energy intake reduced their blood cholesterol and caused multiple changes in their microbiome and metabolome that are relevant in future strategies for the improvement of metabolic health.

[1]  S. Innis,et al.  Hypaphorine is present in human milk in association with consumption of legumes. , 2013, Journal of agricultural and food chemistry.

[2]  Edoardo Pasolli,et al.  Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets. , 2019, Cell host & microbe.

[3]  Gert B. M. Mensink,et al.  A new index to measure healthy food diversity better reflects a healthy diet than traditional measures. , 2007, The Journal of nutrition.

[4]  Eran Segal,et al.  Towards utilization of the human genome and microbiome for personalized nutrition. , 2018, Current opinion in biotechnology.

[5]  J. Espín,et al.  Urolithins are the main urinary microbial-derived phenolic metabolites discriminating a moderate consumption of nuts in free-living subjects with diagnosed metabolic syndrome. , 2012, Journal of agricultural and food chemistry.

[6]  André Karch,et al.  Colonic Butyrate-Producing Communities in Humans: an Overview Using Omics Data , 2017, mSystems.

[7]  S. Turroni,et al.  High-level adherence to a Mediterranean diet beneficially impacts the gut microbiota and associated metabolome , 2015, Gut.

[8]  Dolores Corella,et al.  Plasma acylcarnitines and risk of cardiovascular disease: effect of Mediterranean diet interventions. , 2016, The American journal of clinical nutrition.

[9]  J. Espín,et al.  The gut microbiota metabolism of pomegranate or walnut ellagitannins yields two urolithin-metabotypes that correlate with cardiometabolic risk biomarkers: Comparison between normoweight, overweight-obesity and metabolic syndrome. , 2017, Clinical nutrition.

[10]  P. Ubel,et al.  Barriers to influenza immunization in a low-income urban population. , 2001, American journal of preventive medicine.

[11]  B. Staels,et al.  Bile acid control of metabolism and inflammation in obesity, type 2 diabetes, dyslipidemia and NAFLD. , 2017 .

[12]  E. Le Chatelier,et al.  Specific gut microbiota features and metabolic markers in postmenopausal women with obesity , 2015, Nutrition & Diabetes.

[13]  Kim-Anh Lê Cao,et al.  DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays , 2019, Bioinform..

[14]  W. Willett,et al.  Meta-Analysis of Randomized Controlled Trials of Red Meat Consumption in Comparison With Various Comparison Diets on Cardiovascular Risk Factors , 2019, Circulation.

[15]  T. Key,et al.  Metabolic profiles of male meat eaters, fish eaters, vegetarians, and vegans from the EPIC-Oxford cohort12 , 2015, The American journal of clinical nutrition.

[16]  Edoardo Pasolli,et al.  Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights , 2016, PLoS Comput. Biol..

[17]  Wei Zhang,et al.  Urolithin A suppresses the proliferation of endometrial cancer cells by mediating estrogen receptor-α-dependent gene expression. , 2016, Molecular nutrition & food research.

[18]  L. Dragsted Biomarkers of meat intake and the application of nutrigenomics. , 2010, Meat science.

[19]  J. Holst,et al.  The impact of short-chain fatty acids on GLP-1 and PYY secretion from the isolated perfused rat colon. , 2018, American journal of physiology. Gastrointestinal and liver physiology.

[20]  F. De Filippis,et al.  Dietary Interventions to Modulate the Gut Microbiome-How Far Away Are We From Precision Medicine. , 2018, Inflammatory bowel diseases.

[21]  M. Bes-Rastrollo,et al.  Central obesity and the Mediterranean diet: A systematic review of intervention trials , 2018, Critical reviews in food science and nutrition.

[22]  G. Grosso,et al.  Health risk factors associated with meat, fruit and vegetable consumption in cohort studies: A comprehensive meta-analysis , 2017, PloS one.

[23]  A. Astrup,et al.  New Nordic Diet versus Average Danish Diet: A Randomized Controlled Trial Revealed Healthy Long-Term Effects of the New Nordic Diet by GC-MS Blood Plasma Metabolomics. , 2016, Journal of proteome research.

[24]  F. Tinahones,et al.  Two Healthy Diets Modulate Gut Microbial Community Improving Insulin Sensitivity in a Human Obese Population. , 2016, The Journal of clinical endocrinology and metabolism.

[25]  L. Dragsted,et al.  Diet‐derived microbial metabolites in health and disease , 2019, Nutrition Bulletin.

[26]  J. Sierra,et al.  Higher Fecal Short-Chain Fatty Acid Levels Are Associated with Gut Microbiome Dysbiosis, Obesity, Hypertension and Cardiometabolic Disease Risk Factors , 2018, Nutrients.

[27]  E. Gibney,et al.  Meta-Analysis of the Effects of Foods and Derived Products Containing Ellagitannins and Anthocyanins on Cardiometabolic Biomarkers: Analysis of Factors Influencing Variability of the Individual Responses , 2018, International journal of molecular sciences.

[28]  N. M. Hassimotto,et al.  Potential antiproliferative activity of polyphenol metabolites against human breast cancer cells and their urine excretion pattern in healthy subjects following acute intake of a polyphenol-rich juice of grumixama (Eugenia brasiliensis Lam.). , 2017, Food & function.

[29]  R. Collins,et al.  Blood cholesterol and vascular mortality by age, sex, and blood pressure: a meta-analysis of individual data from 61 prospective studies with 55 000 vascular deaths , 2007, The Lancet.

[30]  C. Mulrow,et al.  Current methods of the US Preventive Services Task Force: a review of the process. , 2001, American journal of preventive medicine.

[31]  A. Gewirtz,et al.  Faculty Opinions recommendation of Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- mice. , 2013 .

[32]  D. Lairon,et al.  Cholesterol-absorber status modifies the LDL cholesterol-lowering effect of a Mediterranean-type diet in adults with moderate cardiovascular risk factors. , 2011, The Journal of nutrition.

[33]  H. Vlamakis,et al.  Ruminococcus gnavus, a member of the human gut microbiome associated with Crohn’s disease, produces an inflammatory polysaccharide , 2019, Proceedings of the National Academy of Sciences.

[34]  D. Giugliano,et al.  Mediterranean Diet and Cardiovascular Health , 2005, Annals of the New York Academy of Sciences.

[35]  F. Berrino,et al.  A priori-defined dietary patterns are associated with reduced risk of stroke in a large Italian cohort. , 2011, The Journal of nutrition.

[36]  P. Bork,et al.  Richness of human gut microbiome correlates with metabolic markers , 2013, Nature.

[37]  J. Carrero,et al.  Healthy Dietary Patterns and Risk of Mortality and ESRD in CKD: A Meta-Analysis of Cohort Studies. , 2017, Clinical journal of the American Society of Nephrology : CJASN.

[38]  J. Gilbert,et al.  Whole-grain wheat consumption reduces inflammation in a randomized controlled trial on overweight and obese subjects with unhealthy dietary and lifestyle behaviors: role of polyphenols bound to cereal dietary fiber. , 2015, The American journal of clinical nutrition.

[39]  M. Hudson Human , 2018, Critical Theory and the Classical World.

[40]  Wei Jia,et al.  A 48‐Hour Vegan Diet Challenge in Healthy Women and Men Induces a BRANCH‐Chain Amino Acid Related, Health Associated, Metabolic Signature , 2018, Molecular nutrition & food research.

[41]  H. Sokol,et al.  Bilophila wadsworthia aggravates high fat diet induced metabolic dysfunctions in mice , 2018, Nature Communications.

[42]  D. Panagiotakos,et al.  Adherence to the Mediterranean diet is associated with the gut microbiota pattern and gastrointestinal characteristics in an adult population , 2017, British Journal of Nutrition.

[43]  L. Dragsted,et al.  Cheese intake lowers plasma cholesterol concentrations without increasing bile acid excretion , 2016 .

[44]  Frédéric Magoulès,et al.  MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data , 2017, bioRxiv.

[45]  Nigel W. Hardy,et al.  Proposed minimum reporting standards for chemical analysis , 2007, Metabolomics.

[46]  Patrice D Cani Human gut microbiome: hopes, threats and promises , 2018, Gut.

[47]  P. Periago,et al.  Identification of urolithin a as a metabolite produced by human colon microflora from ellagic acid and related compounds. , 2005, Journal of agricultural and food chemistry.

[48]  E. Rouchka,et al.  Enhancement of the gut barrier integrity by a microbial metabolite through the Nrf2 pathway , 2019, Nature Communications.

[49]  J. Geleijnse,et al.  Biomarkers of food intake for nuts and vegetable oils: an extensive literature search , 2019, Genes & Nutrition.

[50]  Thaer Barri,et al.  UPLC-ESI-QTOF/MS and multivariate data analysis for blood plasma and serum metabolomics: effect of experimental artefacts and anticoagulant. , 2013, Analytica chimica acta.

[51]  Lawrence A. David,et al.  Diet rapidly and reproducibly alters the human gut microbiome , 2013, Nature.

[52]  I. A. Myles,et al.  Fast food fever: reviewing the impacts of the Western diet on immunity , 2014, Nutrition Journal.

[53]  J. Doré,et al.  Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients , 2008, Proceedings of the National Academy of Sciences.

[54]  Roland Eils,et al.  Complex heatmaps reveal patterns and correlations in multidimensional genomic data , 2016, Bioinform..

[55]  Benjamin M Hillmann,et al.  Daily Sampling Reveals Personalized Diet-Microbiome Associations in Humans. , 2019, Cell host & microbe.

[56]  Stephen J. Bruce,et al.  A whole-grain-rich diet reduces urinary excretion of markers of protein catabolism and gut microbiota metabolism in healthy men after one week. , 2013, The Journal of nutrition.

[57]  H. Rasmussen,et al.  Substituting whole grains for refined grains in a 6-wk randomized trial has a modest effect on gut microbiota and immune and inflammatory markers of healthy adults. , 2017, The American journal of clinical nutrition.

[58]  H. Holscher,et al.  Microbiome-Mediated Effects of the Mediterranean Diet on Inflammation. , 2018, Advances in nutrition.

[59]  C. la Vecchia,et al.  Mediterranean diet and its components in relation to all-cause mortality: meta-analysis , 2018, British Journal of Nutrition.

[60]  S. Granica,et al.  The Activity of Urolithin A and M4 Valerolactone, Colonic Microbiota Metabolites of Polyphenols, in a Prostate Cancer In Vitro Model , 2018, Planta Medica.

[61]  P. Bork,et al.  Human gut microbes impact host serum metabolome and insulin sensitivity , 2016, Nature.

[62]  M. Vohl,et al.  The metabolic signature associated with the Western dietary pattern: a cross-sectional study , 2013, Nutrition Journal.

[63]  M. Martínez-González,et al.  The Mediterranean Diet and Cardiovascular Health: A Critical Review , 2019, Circulation research.

[64]  Estelle Pujos-Guillot,et al.  Discovery and validation of urinary exposure markers for different plant foods by untargeted metabolomics , 2014, Analytical and Bioanalytical Chemistry.

[65]  D. Mozaffarian,et al.  Changes in diet and lifestyle and long-term weight gain in women and men. , 2011, The New England journal of medicine.

[66]  J. Clemente,et al.  The gut microbial community in metabolic syndrome patients is modified by diet. , 2016, The Journal of nutritional biochemistry.

[67]  Yunwei Wang,et al.  Dietary fat-induced taurocholic acid production promotes pathobiont and colitis in IL-10−/− mice , 2012, Nature.

[68]  Iko T. Koevoets,et al.  Out of Shape During Stress: A Key Role for Auxin , 2018, Trends in plant science.

[69]  M. Fenech,et al.  Low-grade inflammation, diet composition and health: current research evidence and its translation , 2015, British Journal of Nutrition.

[70]  D. Rahelić,et al.  DASH Dietary Pattern and Cardiometabolic Outcomes: An Umbrella Review of Systematic Reviews and Meta-Analyses , 2019, Nutrients.

[71]  M. Stampfer,et al.  Evidence-based criteria in the nutritional context. , 2010, Nutrition reviews.

[72]  R. L. Nielsen,et al.  Whole grain-rich diet reduces body weight and systemic low-grade inflammation without inducing major changes of the gut microbiome: a randomised cross-over trial , 2017, Gut.

[73]  Arne Astrup,et al.  Identification of urinary biomarkers after consumption of sea buckthorn and strawberry, by untargeted LC–MS metabolomics: a meal study in adult men , 2016, Metabolomics.