Bioprocessing for biofuels.

While engineering of new biofuels pathways into microbial hosts has received considerable attention, innovations in bioprocessing are required for commercialization of both conventional and next-generation fuels. For ethanol and butanol, reducing energy costs for product recovery remains a challenge. Fuels produced from heterologous aerobic pathways in yeast and bacteria require control of aeration and cooling at large scales. Converting lignocellulosic biomass to sugars for fuels production requires effective biomass pretreatment to increase surface area, decrystallize cellulose and facilitate enzymatic hydrolysis. Effective means to recover microalgae and extract their intracellular lipids remains a practical and economic bottleneck in algal biodiesel production.

[1]  J. Y. Zhu,et al.  Woody biomass pretreatment for cellulosic ethanol production: Technology and energy consumption evaluation. , 2010, Bioresource technology.

[2]  J. Chu,et al.  On the molecular origins of biomass recalcitrance: the interaction network and solvation structures of cellulose microfibrils. , 2010, The journal of physical chemistry. B.

[3]  T. Leathers,et al.  Rapid evaluation of the antibiotic susceptibility of fuel ethanol contaminant biofilms. , 2011, Bioresource technology.

[4]  D. Murzin,et al.  Ultrasound enhancement of cellulose processing in ionic liquids: from dissolution towards functionalization , 2007 .

[5]  Blake A Simmons,et al.  Biomass deconstruction to sugars , 2011, Biotechnology journal.

[6]  Sandy Merino,et al.  Progress and challenges in enzyme development for biomass utilization. , 2007, Advances in biochemical engineering/biotechnology.

[7]  Peter J. Ashman,et al.  Energy requirements and economic analysis of a full-scale microbial flocculation system for microalgal harvesting , 2010 .

[8]  L. Jiang,et al.  Polyimides membranes for pervaporation and biofuels separation , 2009 .

[9]  J. Liao,et al.  High-flux isobutanol production using engineered Escherichia coli: a bioreactor study with in situ product removal , 2011, Applied Microbiology and Biotechnology.

[10]  Cong T. Trinh,et al.  Redesigning Escherichia coli Metabolism for Anaerobic Production of Isobutanol , 2011, Applied and Environmental Microbiology.

[11]  R. Lovitt,et al.  Placing microalgae on the biofuels priority list: a review of the technological challenges , 2010, Journal of The Royal Society Interface.

[12]  J. Keasling,et al.  Engineering microbial biofuel tolerance and export using efflux pumps , 2011, Molecular systems biology.

[13]  H. Oh,et al.  Comparison of several methods for effective lipid extraction from microalgae. , 2010, Bioresource technology.

[14]  E. Papoutsakis,et al.  A comparative view of metabolite and substrate stress and tolerance in microbial bioprocessing: From biofuels and chemicals, to biocatalysis and bioremediation. , 2010, Metabolic engineering.

[15]  Pao-Yang Chen,et al.  Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli , 2010, Molecular systems biology.

[16]  H. Blanch,et al.  In-situ recovery of butanol during fermentation , 1987 .

[17]  W. Qi,et al.  Ethanol From Corn Stover Using SSF: An Economic Assessment , 2011 .

[18]  C. Scott,et al.  High Titer Ethanol Production from Simultaneous Enzymatic Saccharification and Fermentation of Aspen at High Solids: a Comparison between Sporl and Dilute Acid Pretreatments , 2022 .

[19]  Huimin Zhao,et al.  Overcoming glucose repression in mixed sugar fermentation by co-expressing a cellobiose transporter and a β-glucosidase in Saccharomyces cerevisiae. , 2010, Molecular bioSystems.

[20]  B. Dale,et al.  Probing the early events associated with liquid ammonia pretreatment of native crystalline cellulose. , 2011, The journal of physical chemistry. B.

[21]  B. Simmons,et al.  Comparison of dilute acid and ionic liquid pretreatment of switchgrass: Biomass recalcitrance, delignification and enzymatic saccharification. , 2010, Bioresource technology.

[22]  L. Lynd,et al.  Consolidated bioprocessing of cellulosic biomass: an update. , 2005, Current opinion in biotechnology.

[23]  Reeta Rani Singhania,et al.  Microbial cellulases ─ Production, applications and challenges , 2005 .

[24]  J. Keasling,et al.  Microbial production of fatty-acid-derived fuels and chemicals from plant biomass , 2010, Nature.

[25]  M. Wilkins,et al.  Microbial production of ethanol from carbon monoxide. , 2011, Current opinion in biotechnology.

[26]  Todd M. Dooley,et al.  Evaluation of High Solids Alkaline Pretreatment of Rice Straw , 2010, Applied biochemistry and biotechnology.

[27]  A. Ferraz,et al.  Topochemistry, Porosity and Chemical Composition Affecting Enzymatic Hydrolysis of Lignocellulosic Materials , 2011 .

[28]  Albert J. Vilella,et al.  Cellodextrin Transport in Yeast for Improved Biofuel Production , 2010, Science.

[29]  J. Keasling Synthetic biology for synthetic chemistry. , 2008, ACS chemical biology.

[30]  Piotr Oleskowicz-Popiel,et al.  The challenge of enzyme cost in the production of lignocellulosic biofuels. , 2012, Biotechnology and bioengineering.

[31]  J. Cherry,et al.  Directed evolution of industrial enzymes: an update. , 2003, Current opinion in biotechnology.

[32]  M. Ballesteros,et al.  Pretreatment technologies for an efficient bioethanol production process based on enzymatic hydrolysis: A review. , 2010, Bioresource technology.

[33]  Navid Reza Moheimani,et al.  The long-term culture of the coccolithophore Pleurochrysis carterae (Haptophyta) in outdoor raceway ponds , 2006, Journal of Applied Phycology.

[34]  Gongpin Liu,et al.  Effects of polydimethylsiloxane (PDMS) molecular weight on performance of PDMS/ceramic composite mem , 2011 .

[35]  Bryce J. Stokes,et al.  U.S. Billion-ton Update: Biomass Supply for a Bioenergy and Bioproducts Industry , 2011 .

[36]  R. Bogel-Łukasik,et al.  Solubility of Carbohydrates in Ionic Liquids , 2010 .

[37]  Arnold L. Demain,et al.  Saccharification of Complex Cellulosic Substrates by the Cellulase System from Clostridium thermocellum , 1982, Applied and environmental microbiology.

[38]  M. Galbe,et al.  Effects of enzyme feeding strategy on ethanol yield in fed-batch simultaneous saccharification and fermentation of spruce at high dry matter , 2010, Biotechnology for biofuels.

[39]  Michael E Himmel,et al.  Automated filter paper assay for determination of cellulase activity. , 2003, Applied biochemistry and biotechnology.

[40]  F. Malcata Microalgae and biofuels: a promising partnership? , 2011, Trends in biotechnology.

[41]  Luis H. Reyes,et al.  Genomic Library Screens for Genes Involved in n-Butanol Tolerance in Escherichia coli , 2011, PloS one.

[42]  Thaddeus Chukwuemeka Ezeji,et al.  Production of acetone, butanol and ethanol by Clostridium beijerinckii BA101 and in situ recovery by gas stripping , 2003 .

[43]  Marcos Silveira Buckeridge,et al.  Routes to cellulosic ethanol , 2011 .

[44]  Jay D Keasling,et al.  Advanced biofuel production in microbes , 2010, Biotechnology journal.

[45]  E. Record,et al.  Fungal protein production: design and production of chimeric proteins. , 2011, Annual review of microbiology.

[46]  E. Park,et al.  Enhanced cellulase production of the Trichoderma viride mutated by microwave and ultraviolet. , 2010, Microbiological research.

[47]  Sang Hyun Lee,et al.  Ionic liquid‐mediated selective extraction of lignin from wood leading to enhanced enzymatic cellulose hydrolysis , 2009, Biotechnology and bioengineering.

[48]  A. Sakoda,et al.  Structural changes of lignocelluloses by a nonionic surfactant, Tween 20, and their effects on cellulase adsorption and saccharification. , 2011, Bioresource technology.

[49]  M. D. Busto,et al.  Location, kinetics and stability of cellulases induced in Trichoderma reesei cultures , 1996 .

[50]  G. Phillips,et al.  Restructuring the crystalline cellulose hydrogen bond network enhances its depolymerization rate. , 2011, Journal of the American Chemical Society.

[51]  S. Harrison,et al.  Lipid productivity as a key characteristic for choosing algal species for biodiesel production , 2009, Journal of Applied Phycology.

[52]  T. Leathers,et al.  Modeling bacterial contamination of fuel ethanol fermentation , 2009, Biotechnology and bioengineering.

[53]  D. Schell,et al.  Economic impact of total solids loading on enzymatic hydrolysis of dilute acid pretreated corn stover , 2010, Biotechnology progress.

[54]  Piotr Oleskowicz-Popiel,et al.  Technoeconomic analysis of biofuels: A wiki-based platform for lignocellulosic biorefineries , 2010 .

[55]  J. Saddler,et al.  Potential Enzyme Cost Reduction with the Addition of Surfactant during the Hydrolysis of Pretreated Softwood , 2010, Applied biochemistry and biotechnology.

[56]  S. Simpson,et al.  Fermentative production of ethanol from carbon monoxide. , 2011, Current opinion in biotechnology.

[57]  R. Linhardt,et al.  Room temperature ionic liquids as emerging solvents for the pretreatment of lignocellulosic biomass , 2011, Biotechnology and bioengineering.

[58]  Timothy S Gardner,et al.  Industrial fermentation of renewable diesel fuels. , 2011, Current opinion in biotechnology.

[59]  A. K. Frolkova,et al.  Bioethanol dehydration: State of the art , 2010 .

[60]  Q. Yong,et al.  Three-stage hydrolysis to enhance enzymatic saccharification of steam-exploded corn stover. , 2010, Bioresource technology.

[61]  A. Gusakov Alternatives to Trichoderma reesei in biofuel production. , 2011, Trends in biotechnology.

[62]  Jean-Marie Rouillard,et al.  Evolution combined with genomic study elucidates genetic bases of isobutanol tolerance in Escherichia coli , 2011, Microbial cell factories.

[63]  Seema Singh,et al.  Understanding the interactions of cellulose with ionic liquids: a molecular dynamics study. , 2010, The journal of physical chemistry. B.

[64]  Blake A. Simmons,et al.  Techno‐economic analysis of a lignocellulosic ethanol biorefinery with ionic liquid pre‐treatment , 2011 .

[65]  Robin D. Rogers,et al.  Can ionic liquids dissolve wood? Processing and analysis of lignocellulosic materials with 1-n-butyl-3-methylimidazolium chloride , 2007 .

[66]  Jochen Büchs,et al.  High-throughput screening for ionic liquids dissolving (ligno-)cellulose. , 2009, Bioresource technology.