Sufu limits sepsis-induced lung inflammation via regulating phase separation of TRAF6

Rationale: Sepsis is a potentially life-threatening condition caused by the body's response to a severe infection. Although the identification of multiple pathways involved in inflammation, tissue damage and aberrant healing during sepsis, there remain unmet needs for the development of new therapeutic strategies essential to prevent the reoccurrence of infection and organ injuries. Methods: Expression of Suppressor of Fused (Sufu) was evaluated by qRT-PCR, western blotting, and immunofluorescence in murine lung and peritoneal macrophages. The significance of Sufu expression in prognosis was assessed by Kaplan-Meier survival analysis. The GFP-TRAF6-expressing stable cell line (GFP-TRAF6 Blue cells) were constructed to evaluate phase separation of TRAF6. Phase separation of TRAF6 and the roles of Sufu in repressing TRAF6 droplet aggregation were analyzed by co-immunoprecipitation, immunofluorescence, Native-PAGE, FRAP and in vitro assays using purified proteins. The effects of Sufu on sepsis-induced lung inflammation were evaluated by cell function assays, LPS-induced septic shock model and polymicrobial sepsis-CLP mice model. Results: We found that Sufu expression is reduced in early response to lipopolysaccharide (LPS)-induced acute inflammation in murine lung and peritoneal macrophages. Deletion of Sufu aggravated LPS-induced and CLP (cecal ligation puncture)-induced lung injury and lethality in mice, and augmented LPS-induced proinflammatory gene expression in cultured macrophages. In addition, we identified the role of Sufu as a negative regulator of the Toll-Like Receptor (TLR)-triggered inflammatory response. We further demonstrated that Sufu directly interacts with TRAF6, thereby preventing oligomerization and autoubiquitination of TRAF6. Importantly, TRAF6 underwent phase separation during LPS-induced inflammation, which is essential for subsequent ubiquitination activation and NF-κB activity. Sufu inhibits the phase-separated TRAF6 droplet formation, preventing NF-κB activation upon LPS stimulation. In a septic shock model, TRAF6 depletion rescued the augmented inflammatory phenotype in mice with myeloid cell-specific deletion of Sufu. Conclusions: These findings implicated Sufu as an important inhibitor of TRAF6 in sepsis and suggest that therapeutics targeting Sufu-TRAF6 may greatly benefit the treatment of sepsis.

[1]  Zhuojing Luo,et al.  Hedgehog signaling regulates bone homeostasis through orchestrating osteoclast differentiation and osteoclast–osteoblast coupling , 2023, Cellular and Molecular Life Sciences.

[2]  Zhijian J. Chen,et al.  Liquid Phase Separation of NEMO Induced by Polyubiquitin Chains Activates NF-κB , 2022, Molecular cell.

[3]  H. Shu,et al.  Reciprocal regulation of IL-33 receptor–mediated inflammatory response and pulmonary fibrosis by TRAF6 and USP38 , 2022, Proceedings of the National Academy of Sciences of the United States of America.

[4]  Hailong Wu,et al.  Loss of Hilnc prevents diet-induced hepatic steatosis through binding of IGF2BP2 , 2021, Nature Metabolism.

[5]  S. Ballinger,et al.  Hedgehog Signaling Regulates Metabolism and Polarization of Mammary Tumor-Associated Macrophages , 2021, Cancer Research.

[6]  L. Shen,et al.  PTCH1 mutation promotes antitumor immunity and the response to immune checkpoint inhibitors in colorectal cancer patients , 2021, Cancer Immunology, Immunotherapy.

[7]  Yanjie Wei,et al.  Dual activation of Hedgehog and Wnt/β-catenin signaling pathway caused by downregulation of SUFU targeted by miRNA-150 in human gastric cancer , 2021, Aging.

[8]  Zhengfan Jiang,et al.  The STING phase-separator suppresses innate immune signalling , 2021, Nature Cell Biology.

[9]  Yuan Yuan,et al.  SUFU mediates EMT and Wnt/β-catenin signaling pathway activation promoted by miRNA-324-5p in human gastric cancer , 2020, Cell cycle.

[10]  Yan G Zhao,et al.  Phase Separation in Membrane Biology: The Interplay between Membrane-Bound Organelles and Membraneless Condensates. , 2020, Developmental cell.

[11]  Alexander V. Tyakht,et al.  Suppression of liquid–liquid phase separation by 1,6-hexanediol partially compromises the 3D genome organization in living cells , 2020, bioRxiv.

[12]  K. Fitzgerald,et al.  Toll-like Receptors and the Control of Immunity , 2020, Cell.

[13]  Xuehao Wang,et al.  Circular RNA MAT2B Promotes Glycolysis and Malignancy of Hepatocellular Carcinoma Through the miR‐338‐3p/PKM2 Axis Under Hypoxic Stress , 2019, Hepatology.

[14]  C. Siebold,et al.  Biochemical mechanisms of vertebrate hedgehog signaling , 2019, Development.

[15]  Zhijian J. Chen,et al.  DNA-induced liquid phase condensation of cGAS activates innate immune signaling , 2018, Science.

[16]  Jiabin Tang,et al.  Molecular mechanisms of suppressor of fused in regulating the hedgehog signalling pathway. , 2018, Oncology letters.

[17]  S. Vranić,et al.  The role of the Hedgehog signaling pathway in cancer: A comprehensive review. , 2017, Bosnian journal of basic medical sciences.

[18]  C. Brangwynne,et al.  Liquid phase condensation in cell physiology and disease , 2017, Science.

[19]  M. Netea,et al.  The immunopathology of sepsis and potential therapeutic targets , 2017, Nature Reviews Immunology.

[20]  Anthony A. Hyman,et al.  Biomolecular condensates: organizers of cellular biochemistry , 2017, Nature Reviews Molecular Cell Biology.

[21]  Diana M. Mitrea,et al.  Coexisting Liquid Phases Underlie Nucleolar Subcompartments , 2016, Cell.

[22]  Zhengfan Jiang,et al.  The kinase MST4 limits inflammatory responses through direct phosphorylation of the adaptor TRAF6 , 2015, Nature Immunology.

[23]  A. Sonnenberg,et al.  Sepsis lethality via exacerbated tissue infiltration and TLR-induced cytokine production by neutrophils is integrin α3β1-dependent. , 2014, Blood.

[24]  Liuqing Yang,et al.  lncRNA Directs Cooperative Epigenetic Regulation Downstream of Chemokine Signals , 2014, Cell.

[25]  K. Kwiatkowska,et al.  Co-operation of TLR4 and raft proteins in LPS-induced pro-inflammatory signaling , 2014, Cellular and Molecular Life Sciences.

[26]  J. Briscoe,et al.  The mechanisms of Hedgehog signalling and its roles in development and disease , 2013, Nature Reviews Molecular Cell Biology.

[27]  B. Koller,et al.  The innate immune sensor NLRC3 attenuates Toll-like receptor signaling via modification of the signaling adaptor TRAF6 and transcription factor NF-κB , 2012, Nature Immunology.

[28]  Pere Roca-Cusachs,et al.  Finding the weakest link – exploring integrin-mediated mechanical molecular pathways , 2012, Journal of Cell Science.

[29]  J. Groves,et al.  Receptor signaling clusters in the immune synapse. , 2012, Annual review of biophysics.

[30]  H. van Dam,et al.  Ubiquitin-specific Protease 4 Mitigates Toll-like/Interleukin-1 Receptor Signaling and Regulates Innate Immune Activation* , 2012, The Journal of Biological Chemistry.

[31]  M. Kriebel,et al.  The dual regulator Sufu integrates Hedgehog and Wnt signals in the early Xenopus embryo. , 2011, Developmental biology.

[32]  D. Moore,et al.  The orphan nuclear receptor SHP acts as a negative regulator in inflammatory signaling triggered by Toll-like receptors , 2011, Nature Immunology.

[33]  P. Ranjan,et al.  NLRX1 protein attenuates inflammatory responses to infection by interfering with the RIG-I-MAVS and TRAF6-NF-κB signaling pathways. , 2011, Immunity.

[34]  T. Jin,et al.  Dual Phosphorylation of Suppressor of Fused (Sufu) by PKA and GSK3β Regulates Its Stability and Localization in the Primary Cilium* , 2011, The Journal of Biological Chemistry.

[35]  Chi-Chung Hui,et al.  Suppressor of Fused Controls Mid-Hindbrain Patterning and Cerebellar Morphogenesis via GLI3 Repressor , 2011, The Journal of Neuroscience.

[36]  Jing Wang,et al.  MCP-induced protein 1 deubiquitinates TRAF proteins and negatively regulates JNK and NF-κB signaling , 2010, The Journal of experimental medicine.

[37]  J. Merchant,et al.  Hedgehog is an anti-inflammatory epithelial signal for the intestinal lamina propria. , 2010, Gastroenterology.

[38]  S. Akira,et al.  Pattern Recognition Receptors and Inflammation , 2010, Cell.

[39]  Noula Shembade,et al.  Inhibition of NF-κB Signaling by A20 Through Disruption of Ubiquitin Enzyme Complexes , 2010, Science.

[40]  Zhijian J. Chen,et al.  Ubiquitylation in innate and adaptive immunity , 2009, Nature.

[41]  Chi-Chung Hui,et al.  Hedgehog signaling in development and cancer. , 2008, Developmental cell.

[42]  M. Tremelling,et al.  Analysis of Germline GLI1 Variation Implicates Hedgehog Signalling in the Regulation of Intestinal Inflammatory Pathways , 2008, PLoS medicine.

[43]  C. Heldin,et al.  The type I TGF-β receptor engages TRAF6 to activate TAK1 in a receptor kinase-independent manner , 2008, Nature Cell Biology.

[44]  Shao-Cong Sun,et al.  Deubiquitinating enzyme CYLD negatively regulates RANK signaling and osteoclastogenesis in mice. , 2008, The Journal of clinical investigation.

[45]  Hao Wu,et al.  Site-specific Lys-63-linked Tumor Necrosis Factor Receptor-associated Factor 6 Auto-ubiquitination Is a Critical Determinant of IκB Kinase Activation* , 2006, Journal of Biological Chemistry.

[46]  M. Lenardo,et al.  Caspase-8 Regulation by Direct Interaction with TRAF6 in T Cell Receptor-Induced NF-κB Activation , 2006, Current Biology.

[47]  M. Mann,et al.  Specificity in Toll-like receptor signalling through distinct effector functions of TRAF3 and TRAF6 , 2006, Nature.

[48]  Zhijian J. Chen,et al.  TIFA activates IkappaB kinase (IKK) by promoting oligomerization and ubiquitination of TRAF6. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[49]  Matthew T Wheeler,et al.  The ubiquitin-modifying enzyme A20 is required for termination of Toll-like receptor responses , 2004, Nature Immunology.

[50]  D. Wallach Faculty Opinions recommendation of De-ubiquitination and ubiquitin ligase domains of A20 downregulate NF-kappaB signalling. , 2004 .

[51]  L. Turka,et al.  TNF Receptor-Associated Factor 6 Deficiency during Hemopoiesis Induces Th2-Polarized Inflammatory Disease 1 , 2003, The Journal of Immunology.

[52]  Jürgen Ruland,et al.  Differential requirement for Malt1 in T and B cell antigen receptor signaling. , 2003, Immunity.

[53]  A. Rao Faculty Opinions recommendation of CYLD is a deubiquitinating enzyme that negatively regulates NF-kappaB activation by TNFR family members. , 2003 .

[54]  Hao Wu,et al.  Distinct molecular mechanism for initiating TRAF6 signalling , 2002, Nature.

[55]  Young Chul Park,et al.  All TRAFs are not created equal: common and distinct molecular mechanisms of TRAF-mediated signal transduction. , 2002, Journal of cell science.

[56]  Zhijian J. Chen,et al.  TAK1 is a ubiquitin-dependent kinase of MKK and IKK , 2001, Nature.

[57]  Zhijian J. Chen,et al.  Activation of the IκB Kinase Complex by TRAF6 Requires a Dimeric Ubiquitin-Conjugating Enzyme Complex and a Unique Polyubiquitin Chain , 2000, Cell.

[58]  Zhaodan Cao,et al.  TRAF6 is a signal transducer for interleukin-1 , 1996, Nature.

[59]  D. Remick,et al.  Kinetics of TNF, IL-6, and IL-8 gene expression in LPS-stimulated human whole blood. , 1991, Biochemical and biophysical research communications.

[60]  M. Rosen,et al.  Effects of alpha-adrenergic stimulation on intracellular sodium activity and automaticity in canine Purkinje fibers. , 1990, Circulation research.

[61]  C. Pickart,et al.  A novel, arsenite-sensitive E2 of the ubiquitin pathway: purification and properties. , 1989, Biochemistry.

[62]  L. Salmena,et al.  Requirement for caspase-8 in NF-kappaB activation by antigen receptor. , 2005, Science.

[63]  Tom Misteli,et al.  Measurement of dynamic protein binding to chromatin in vivo, using photobleaching microscopy. , 2004, Methods in enzymology.