Association of host genome with intestinal microbial composition in a large healthy cohort

[1]  A. Paterson,et al.  IBD Genetic Risk Profile in Healthy First-Degree Relatives of Crohn's Disease Patients. , 2016, Journal of Crohn's & colitis.

[2]  P. O’Toole,et al.  Gut microbiota and aging , 2015, Science.

[3]  Emily R. Davenport,et al.  Genome-Wide Association Studies of the Human Gut Microbiota , 2015, PloS one.

[4]  Angela C. Poole,et al.  Human Genetics Shape the Gut Microbiome , 2014, Cell.

[5]  C. Sasakawa,et al.  Exploitation of the host ubiquitin system by human bacterial pathogens , 2014, Nature Reviews Microbiology.

[6]  Se Jin Song,et al.  The treatment-naive microbiome in new-onset Crohn's disease. , 2014, Cell host & microbe.

[7]  Peggy Hall,et al.  The NHGRI GWAS Catalog, a curated resource of SNP-trait associations , 2013, Nucleic Acids Res..

[8]  C. Wallace,et al.  Bayesian Test for Colocalisation between Pairs of Genetic Association Studies Using Summary Statistics , 2013, PLoS genetics.

[9]  Jesse R. Zaneveld,et al.  Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences , 2013, Nature Biotechnology.

[10]  Fredrik H. Karlsson,et al.  Gut metagenome in European women with normal, impaired and diabetic glucose control , 2013, Nature.

[11]  Buhm Han,et al.  Imputing Amino Acid Polymorphisms in Human Leukocyte Antigens , 2013, PloS one.

[12]  Ellen T. Gelfand,et al.  The Genotype-Tissue Expression (GTEx) project , 2013, Nature Genetics.

[13]  Alison S. Waller,et al.  Genomic variation landscape of the human gut microbiome , 2012, Nature.

[14]  Jake K. Byrnes,et al.  Bayesian refinement of association signals for 14 loci in 3 common diseases , 2012, Nature Genetics.

[15]  Hiroshi I. Suzuki,et al.  Sjögren Syndrome Antigen B (SSB)/La Promotes Global MicroRNA Expression by Binding MicroRNA Precursors through Stem-Loop Recognition* , 2012, The Journal of Biological Chemistry.

[16]  David C. Wilson,et al.  Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease , 2012, Nature.

[17]  Qiang Feng,et al.  A metagenome-wide association study of gut microbiota in type 2 diabetes , 2012, Nature.

[18]  Francisco Guarner,et al.  The gut microbiota in IBD , 2012, Nature Reviews Gastroenterology &Hepatology.

[19]  Susan M. Huse,et al.  A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters , 2012, PloS one.

[20]  Katherine H. Huang,et al.  A framework for human microbiome research , 2012, Nature.

[21]  William A. Walters,et al.  Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms , 2012, The ISME Journal.

[22]  N. Kyrpides,et al.  Complete genome sequence of Acidaminococcus fermentans type strain (VR4) , 2012 .

[23]  Zhijian J. Chen,et al.  The role of ubiquitylation in immune defence and pathogen evasion , 2011, Nature Reviews Immunology.

[24]  Daniel G. Brown,et al.  PANDAseq: paired-end assembler for illumina sequences , 2012, BMC Bioinformatics.

[25]  J. Marchini,et al.  Genotype Imputation with Thousands of Genomes , 2011, G3: Genes | Genomes | Genetics.

[26]  Ruth Ley,et al.  Unravelling the effects of the environment and host genotype on the gut microbiome , 2011, Nature Reviews Microbiology.

[27]  Robert C. Edgar,et al.  BIOINFORMATICS APPLICATIONS NOTE , 2001 .

[28]  N. Kyrpides,et al.  Complete genome sequence of Acidaminococcus fermentans type strain (VR4T) , 2010, Standards in genomic sciences.

[29]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[30]  M. Province,et al.  Avoiding the high Bonferroni penalty in genome‐wide association studies , 2009, Genetic epidemiology.

[31]  P. Donnelly,et al.  A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies , 2009, PLoS genetics.

[32]  B. Roe,et al.  A core gut microbiome in obese and lean twins , 2008, Nature.

[33]  J. Doré,et al.  Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients , 2008, Proceedings of the National Academy of Sciences.

[34]  Eden R Martin,et al.  A multiple testing correction method for genetic association studies using correlated single nucleotide polymorphisms , 2008, Genetic epidemiology.

[35]  Manuel A. R. Ferreira,et al.  PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.

[36]  P. Donnelly,et al.  Replicating genotype–phenotype associations , 2007, Nature.

[37]  Eoin L. Brodie,et al.  Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB , 2006, Applied and Environmental Microbiology.

[38]  J. Li,et al.  Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix , 2005, Heredity.

[39]  Korbinian Strimmer,et al.  APE: Analyses of Phylogenetics and Evolution in R language , 2004, Bioinform..

[40]  D. Gudbjartsson,et al.  Subclinical intestinal inflammation: an inherited abnormality in Crohn's disease relatives? , 2003, Gastroenterology.

[41]  W. Pan.  Akaike's Information Criterion in Generalized Estimating Equations , 2001, Biometrics.

[42]  L. Almasy,et al.  Multipoint quantitative-trait linkage analysis in general pedigrees. , 1998, American journal of human genetics.

[43]  D. Lipman,et al.  A genomic perspective on protein families. , 1997, Science.

[44]  S. Zeger,et al.  Longitudinal data analysis using generalized linear models , 1986 .