Publishing and Using Plant Names as an Ontology Service

Animals and plants are referred to using scientific or common names depending on the expertise of an audience or a source of data. The names change in time and therefore their usage as identifiers as such is problematic. We present a solution for managing and using plant names as an ontology. The ontology is based on the TaxMeOn meta-ontology for biological names. In order to refer to organisms unambiguously and publish information as Linked Data on the web, the names are given URIs. The ontology is developed collaboratively and it supports the approval process and temporal tracking of the common names. We introduce an ontology service of plant names for end-users and provide user interfaces and APIs for integrating the ontology into applications.

[1]  Claus Fischer,et al.  Towards a List of Available Names in Zoology, partim Phylum Rotifera , 2012 .

[2]  Andrew C. Jones,et al.  Identifying and relating biological concepts in the Catalogue of Life , 2011, J. Biomed. Semant..

[3]  D J Patterson,et al.  Names are key to the big new biology. , 2010, Trends in ecology & evolution.

[4]  Tom Heath,et al.  Linked Data: Evolving the Web into a Global Data Space , 2011, Linked Data.

[5]  Eero Hyvönen,et al.  Building a National Semantic Web Ontology and Ontology Service Infrastructure -The FinnONTO Approach , 2008, ESWC.

[6]  Roderic D. M. Page Taxonomic names, metadata, and the Semantic Web , 2006 .

[7]  Nico M. Franz,et al.  BIOLOGICAL TAXONOMY AND ONTOLOGY DEVELOPMENT: SCOPE AND LIMITATIONS , 2010 .

[8]  David Spurgeon,et al.  Spreading the word , 1977, Nature.

[9]  Indra Neil Sarkar,et al.  Biodiversity informatics: organizing and linking information across the spectrum of life , 2007, Briefings Bioinform..

[10]  Eero Hyvönen,et al.  Collaborative Metadata Editor Integrated with Ontology Services and Faceted Portals , 2010 .

[11]  Eero Hyvönen,et al.  Ontology Libraries for Production Use: The Finnish Ontology Library Service ONKI , 2009, ESWC.

[12]  Roderic D. M. Page,et al.  Biodiversity informatics: the challenge of linking data and the role of shared identifiers , 2008, Briefings Bioinform..

[13]  Joop H.J. Schaminée,et al.  The need for and the requirements of EuroSL, an electronic taxonomic reference list for all European plants , 2012 .

[14]  Eero Hyvönen,et al.  Title : Biological Names and Taxonomies on the Semantic Web-Managing the Change in Scientific Conception Year : 2011 Version : Post print , 2018 .

[15]  Martin Boeker,et al.  The ontology of biological taxa , 2008, ISMB.