Patient-derived Siglec-6-targeting antibodies engineered for T-cell recruitment have potential therapeutic utility in chronic lymphocytic leukemia

Background Despite numerous therapeutic options, safe and curative therapy is unavailable for most patients with chronic lymphocytic leukemia (CLL). A drawback of current therapies such as the anti-CD20 monoclonal antibody (mAb) rituximab is the elimination of all healthy B cells, resulting in impaired humoral immunity. We previously reported the identification of a patient-derived, CLL-binding mAb, JML-1, and identified sialic acid-binding immunoglobulin-like lectin-6 (Siglec-6) as the target of JML-1. Although little is known about Siglec-6, it appears to be an attractive target for cancer immunotherapy due to its absence on most healthy cells and tissues. Methods We used a target-specific approach to mine for additional patient-derived anti-Siglec-6 mAbs. To assess the therapeutic utility of targeting Siglec-6 in the context of CLL, T cell-recruiting bispecific antibodies (T-biAbs) that bind to Siglec-6 and CD3 were engineered into single-chain variable fragment–Fc and dual-affinity retargeting (DART)–Fc constructs. T-biAbs were evaluated for their activity in vitro, ex vivo, and in vivo. Results We discovered the anti-Siglec-6 mAbs RC-1 and RC-2, which bind with higher affinity than JML-1 yet maintain similar specificity. Both JML-1 and RC-1 T-biAbs were effective at activating T cells and killing Siglec-6+ target cells. The RC-1 clone in the DART–Fc format was the most potent T-biAb tested and was the only anti-Siglec-6 T-biAb that eliminated Siglec-6+ primary CLL cells via autologous T cells at pathological T-to-CLL cell ratios. Tested at healthy T-to-B cell ratios, it also eliminated a Siglec-6+ fraction of primary B cells from healthy donors. The subpicomolar potency of the DART–Fc format was attributed to the reduction in the length and flexibility of the cytolytic synapse. Furthermore, the RC-1 T-biAb was effective at clearing MEC1 CLL cells in vivo and demonstrated a circulatory half-life of over 7 days. Conclusion Siglec-6-targeting T-biAbs are highly potent and specific for eliminating Siglec-6+ leukemic and healthy B cells while sparing Siglec-6− healthy B cells, suggesting a unique treatment strategy for CLL with diminished suppression of humoral immunity. Our data corroborate reports that T-biAb efficacy is dependent on synapse geometry and reveal that synapse architecture can be tuned via antibody engineering. Our fully human anti-Siglec-6 antibodies and T-biAbs have potential for cancer immunotherapy. Trial registration number NCT00923507.

[1]  H. Einsele,et al.  Siglec-6 is a novel target for CAR T-cell therapy in acute myeloid leukemia (AML). , 2021, Blood.

[2]  Jennifer R. Brown,et al.  Targeting Bruton’s Tyrosine Kinase in CLL , 2021, Frontiers in Immunology.

[3]  I. Lucca,et al.  Siglec-6 as a New Potential Immune Checkpoint for Bladder Cancer Patients. , 2021, European urology focus.

[4]  K. Keyvanfar,et al.  BTK Inhibitors, Irrespective of ITK Inhibition, Increase Efficacy of a CD19/CD3 Bispecific Antibody in CLL. , 2021, Blood.

[5]  S. Stilgenbauer,et al.  Current Treatment Options in CLL , 2021, Cancers.

[6]  G. Shefer,et al.  Efficacy of the BNT162b2 mRNA COVID-19 vaccine in patients with chronic lymphocytic leukemia , 2021, Blood.

[7]  Michelle S. Miller,et al.  Targeting a neoantigen derived from a common TP53 mutation , 2021, Science.

[8]  S. Pittaluga,et al.  Siglec-6 is a Target for Chimeric Antigen Receptor T-cell Treatment of Chronic Lymphocytic Leukemia , 2021, Leukemia.

[9]  P. Parren,et al.  A Bispecific Single-Domain Antibody Boosts Autologous Vγ9Vδ2-T Cell Responses Toward CD1d in Chronic Lymphocytic Leukemia , 2021, Clinical Cancer Research.

[10]  A. Zelenetz,et al.  Outcomes of COVID-19 in patients with CLL: a multicenter international experience , 2020, Blood.

[11]  Haiyong Peng,et al.  Chemically programmable and switchable CAR-T therapy. , 2020, Angewandte Chemie.

[12]  M. Huse,et al.  Interdomain spacing and spatial configuration drive the potency of IgG-[L]-scFv T cell bispecific antibodies , 2020, Science Translational Medicine.

[13]  J. Paulson,et al.  Siglecs as Immune Cell Checkpoints in Disease. , 2020, Annual review of immunology.

[14]  C. Rader Bispecific antibodies in cancer immunotherapy. , 2019, Current opinion in biotechnology.

[15]  Z. Modrušan,et al.  CD3 bispecific antibody–induced cytokine release is dispensable for cytotoxic T cell activity , 2019, Science Translational Medicine.

[16]  L. Bullinger,et al.  Venetoclax resistance and acquired BCL2 mutations in chronic lymphocytic leukemia , 2019, Haematologica.

[17]  P. Parren,et al.  Bispecific antibodies: a mechanistic review of the pipeline , 2019, Nature Reviews Drug Discovery.

[18]  Martin Eisenacher,et al.  The PRIDE database and related tools and resources in 2019: improving support for quantification data , 2018, Nucleic Acids Res..

[19]  J. Appelbaum,et al.  Hematopoietic Stem Cell Transplantation in the Era of Engineered Cell Therapy , 2018, Current Hematologic Malignancy Reports.

[20]  A. Keshavarzian,et al.  Functional Inhibitory Siglec-6 Is Upregulated in Human Colorectal Cancer-Associated Mast Cells , 2018, Front. Immunol..

[21]  E. M. Cook,et al.  A CD19/CD3 bispecific antibody for effective immunotherapy of chronic lymphocytic leukemia in the ibrutinib era. , 2018, Blood.

[22]  A. Wiestner,et al.  Siglec-6 on Chronic Lymphocytic Leukemia Cells Is a Target for Post-Allogeneic Hematopoietic Stem Cell Transplantation Antibodies , 2018, Cancer Immunology Research.

[23]  J. Julien,et al.  Characterization of Glycoproteins with the Immunoglobulin Fold by X-Ray Crystallography and Biophysical Techniques , 2018, Journal of visualized experiments : JoVE.

[24]  E. M. Cook,et al.  Potent and Selective Antitumor Activity of a T-Cell Engaging Bispecific Antibody Targeting a Membrane-Proximal Epitope of ROR1 , 2017, bioRxiv.

[25]  M. Fallahi,et al.  Mining Naïve Rabbit Antibody Repertoires by Phage Display for Monoclonal Antibodies of Therapeutic Utility. , 2017, Journal of molecular biology.

[26]  Jeffrey A Jones,et al.  Ibrutinib treatment improves T cell number and function in CLL patients , 2017, The Journal of clinical investigation.

[27]  M. Raffeld,et al.  Clonal evolution leading to ibrutinib resistance in chronic lymphocytic leukemia. , 2017, Blood.

[28]  C. Klein,et al.  Novel human IgG1 and IgG4 Fc-engineered antibodies with completely abolished immune effector functions. , 2016, Protein engineering, design & selection : PEDS.

[29]  T. Kipps,et al.  Ibrutinib inhibits CD20 upregulation on CLL B cells mediated by the CXCR4/SDF-1 axis. , 2016, Blood.

[30]  Andrew D. Tustian,et al.  Development of purification processes for fully human bispecific antibodies based upon modification of protein A binding avidity , 2016, mAbs.

[31]  James R. Apgar,et al.  Development of PF-06671008, a Highly Potent Anti-P-cadherin/Anti-CD3 Bispecific DART Molecule with Extended Half-Life for the Treatment of Cancer , 2016, Antibodies.

[32]  E. Shpall,et al.  Isolation of a novel chronic lymphocytic leukemic (CLL) cell line and development of an in vivo mouse model of CLL. , 2016, Leukemia research.

[33]  A. Johnson,et al.  Targeted therapies in CLL: mechanisms of resistance and strategies for management. , 2015, Blood.

[34]  Michael J E Sternberg,et al.  The Phyre2 web portal for protein modeling, prediction and analysis , 2015, Nature Protocols.

[35]  Gert Vriend,et al.  New ways to boost molecular dynamics simulations , 2015, J. Comput. Chem..

[36]  D. Weis,et al.  Mapping Residual Structure in Intrinsically Disordered Proteins at Residue Resolution Using Millisecond Hydrogen/Deuterium Exchange and Residue Averaging , 2015, Journal of The American Society for Mass Spectrometry.

[37]  Patrick R Griffin,et al.  HDX-MS guided drug discovery: small molecules and biopharmaceuticals. , 2014, Current opinion in structural biology.

[38]  J. Byrd,et al.  Characterization of a New Chronic Lymphocytic Leukemia Cell Line for Mechanistic In Vitro and In Vivo Studies Relevant to Disease , 2013, PloS one.

[39]  Jaykaran Charan,et al.  How to calculate sample size in animal studies? , 2013, Journal of pharmacology & pharmacotherapeutics.

[40]  Chad J. Miller,et al.  A comprehensive mathematical model for three-body binding equilibria. , 2013, Journal of the American Chemical Society.

[41]  V. Winn,et al.  Siglec-6 is expressed in gestational trophoblastic disease and affects proliferation, apoptosis and invasion , 2012, Endocrine-related cancer.

[42]  M. J. Chalmers,et al.  HDX Workbench: Software for the Analysis of H/D Exchange MS Data , 2012, Journal of The American Society for Mass Spectrometry.

[43]  C. Rader Selection of human Fab libraries by phage display. , 2012, Methods in molecular biology.

[44]  C. Rader Generation of human Fab libraries for phage display. , 2012, Methods in molecular biology.

[45]  Wentian Li,et al.  Intraclonal Complexity in Chronic Lymphocytic Leukemia: Fractions Enriched in Recently Born/Divided and Older/Quiescent Cells , 2011, Molecular medicine.

[46]  P. Parren,et al.  Loss of CD20 and Bound CD20 Antibody from Opsonized B Cells Occurs More Rapidly Because of Trogocytosis Mediated by Fc Receptor-Expressing Effector Cells Than Direct Internalization by the B Cells , 2011, The Journal of Immunology.

[47]  H. Koistinen,et al.  Glycodelin-A Protein Interacts with Siglec-6 Protein to Suppress Trophoblast Invasiveness by Down-regulating Extracellular Signal-regulated Kinase (ERK)/c-Jun Signaling Pathway* , 2011, The Journal of Biological Chemistry.

[48]  T. Chun,et al.  Attenuation of HIV-associated human B cell exhaustion by siRNA downregulation of inhibitory receptors. , 2011, The Journal of clinical investigation.

[49]  P. Moore,et al.  Application of dual affinity retargeting molecules to achieve optimal redirected T-cell killing of B-cell lymphoma. , 2011, Blood.

[50]  A. Bradley,et al.  A hyperactive piggyBac transposase for mammalian applications , 2011, Proceedings of the National Academy of Sciences.

[51]  P. Moore,et al.  Effector cell recruitment with novel Fv-based dual-affinity re-targeting protein leads to potent tumor cytolysis and in vivo B-cell depletion. , 2010, Journal of molecular biology.

[52]  D. Stuart,et al.  Generation and characterization of a chimeric rabbit/human Fab for co-crystallization of HIV-1 Rev. , 2010, Journal of molecular biology.

[53]  P. Kufer,et al.  Epitope distance to the target cell membrane and antigen size determine the potency of T cell-mediated lysis by BiTE antibodies specific for a large melanoma surface antigen , 2010, Cancer Immunology, Immunotherapy.

[54]  R. Srinivasan,et al.  A human monoclonal antibody drug and target discovery platform for B-cell chronic lymphocytic leukemia based on allogeneic hematopoietic stem cell transplantation and phage display. , 2009, Blood.

[55]  K. Kwong,et al.  E. coli Expression and Purification of Fab Antibody Fragments , 2009, Current protocols in protein science.

[56]  K. Kwong,et al.  Generation, affinity maturation, and characterization of a human anti-human NKG2D monoclonal antibody with dual antagonistic and agonistic activity. , 2008, Journal of molecular biology.

[57]  J. Byrd,et al.  Chronic lymphocytic leukemia T cells show impaired immunological synapse formation that can be reversed with an immunomodulating drug. , 2008, The Journal of clinical investigation.

[58]  Weixian Lu,et al.  A time- and cost-efficient system for high-level protein production in mammalian cells. , 2006, Acta crystallographica. Section D, Biological crystallography.

[59]  A. Varki,et al.  Myeloid precursors and acute myeloid leukemia cells express multiple CD33-related Siglecs. , 2006, Experimental hematology.

[60]  Scott A. Busby,et al.  Probing protein ligand interactions by automated hydrogen/deuterium exchange mass spectrometry. , 2006, Analytical chemistry.

[61]  Catherine J. Wu,et al.  Induction of tumor immunity following allogeneic stem cell transplantation. , 2006, Advances in immunology.

[62]  L. Bruins,et al.  Biophotonic cytotoxicity assay for high-throughput screening of cytolytic killing. , 2005, Journal of immunological methods.

[63]  Camellia W. Adams,et al.  An efficient route to human bispecific IgG , 1998, Nature Biotechnology.

[64]  L. Jendeberg,et al.  Engineering of Fc(1) and Fc(3) from human immunoglobulin G to analyse subclass specificity for staphylococcal protein A. , 1997, Journal of immunological methods.

[65]  J. Thornton,et al.  PROCHECK: a program to check the stereochemical quality of protein structures , 1993 .

[66]  Zhongqi Zhang,et al.  Determination of amide hydrogen exchange by mass spectrometry: A new tool for protein structure elucidation , 1993, Protein science : a publication of the Protein Society.