Evolution of Structural DNA Nanotechnology
暂无分享,去创建一个
Veikko Linko | Mauri A Kostiainen | Sami Nummelin | Juhana Kommeri | Sami Nummelin | V. Linko | M. Kostiainen | Juhana Kommeri
[1] Hendrik Dietz,et al. Dielectrophoretic trapping of multilayer DNA origami nanostructures and DNA origami‐induced local destruction of silicon dioxide , 2015, Electrophoresis.
[2] Mingdong Dong,et al. DNA origami design of dolphin-shaped structures with flexible tails. , 2008, ACS nano.
[3] Tim Liedl,et al. M1.3--a small scaffold for DNA origami . , 2013, Nanoscale.
[4] T. G. Martin,et al. Cryo-EM structure of a 3D DNA-origami object , 2012, Proceedings of the National Academy of Sciences.
[5] C. Mao,et al. Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra , 2008, Nature.
[6] W. Chiu,et al. Designer nanoscale DNA assemblies programmed from the top down , 2016, Science.
[7] Veikko Linko,et al. A modular DNA origami-based enzyme cascade nanoreactor. , 2015, Chemical communications.
[8] J. Kjems,et al. Self-assembly of a nanoscale DNA box with a controllable lid , 2009, Nature.
[9] N. Seeman,et al. Programmable materials and the nature of the DNA bond , 2015, Science.
[10] Faisal A. Aldaye,et al. Modular access to structurally switchable 3D discrete DNA assemblies. , 2007, Journal of the American Chemical Society.
[11] Luvena L. Ong,et al. Three-Dimensional Structures Self-Assembled from DNA Bricks , 2012, Science.
[12] Hao Yan,et al. Lattice-free prediction of three-dimensional structure of programmed DNA assemblies , 2014, Nature Communications.
[13] Ryan J. Kershner,et al. Placement and orientation of individual DNA shapes on lithographically patterned surfaces. , 2009, Nature nanotechnology.
[14] Jing Pan,et al. Dynamic and Progressive Control of DNA Origami Conformation by Modulating DNA Helicity with Chemical Adducts. , 2016, ACS nano.
[15] T. LaBean,et al. Toward larger DNA origami. , 2014, Nano letters.
[16] M. Bathe,et al. Quantitative prediction of 3D solution shape and flexibility of nucleic acid nanostructures , 2011, Nucleic acids research.
[17] Ralf Seidel,et al. Shape-controlled synthesis of gold nanostructures using DNA origami molds. , 2014, Nano letters.
[18] Hao Yan,et al. Nanocaged enzymes with enhanced catalytic activity and increased stability against protease digestion , 2016, Nature Communications.
[19] Arun Richard Chandrasekaran,et al. Evolution of DNA origami scaffolds , 2016 .
[20] Samara L. Reck-Peterson,et al. Tug-of-War in Motor Protein Ensembles Revealed with a Programmable DNA Origami Scaffold , 2012, Science.
[21] H. Dietz,et al. Placing molecules with Bohr radius resolution using DNA origami. , 2016, Nature nanotechnology.
[22] John Jensen,et al. Anisotropic Electroless Deposition on DNA Origami Templates To Form Small Diameter Conductive Nanowires. , 2017, Langmuir : the ACS journal of surfaces and colloids.
[23] A. Turberfield,et al. DNA-templated protein arrays for single-molecule imaging. , 2011, Nano letters.
[24] F. Simmel,et al. Self-Assembled Active Plasmonic Waveguide with a Peptide-Based Thermomechanical Switch. , 2016, ACS nano.
[25] Wolfgang Fritzsche,et al. Toward Single Electron Nanoelectronics Using Self-Assembled DNA Structure. , 2016, Nano letters.
[26] Lulu Qian,et al. Supporting Online Material Materials and Methods Figs. S1 to S6 Tables S1 to S4 References and Notes Scaling up Digital Circuit Computation with Dna Strand Displacement Cascades , 2022 .
[27] Peng Yin,et al. Genetic encoding of DNA nanostructures and their self-assembly in living bacteria , 2016, Nature Communications.
[28] Adam H. Marblestone,et al. Rapid prototyping of 3D DNA-origami shapes with caDNAno , 2009, Nucleic acids research.
[29] Yonggang Ke,et al. Au nanorod helical superstructures with designed chirality. , 2015, Journal of the American Chemical Society.
[30] V. Linko,et al. The enabled state of DNA nanotechnology. , 2013, Current opinion in biotechnology.
[31] K. Namba,et al. DNA prism structures constructed by folding of multiple rectangular arms. , 2009, Journal of the American Chemical Society.
[32] N. Seeman,et al. Synthesis from DNA of a molecule with the connectivity of a cube , 1991, Nature.
[33] N. Seeman,et al. Design and self-assembly of two-dimensional DNA crystals , 1998, Nature.
[34] Hao Yan,et al. DNA Origami with Complex Curvatures in Three-Dimensional Space , 2011, Science.
[35] Hao Yan,et al. 3D Framework DNA Origami with Layered Crossovers. , 2016, Angewandte Chemie.
[36] Erik Winfree,et al. Self-assembly of carbon nanotubes into two-dimensional geometries using DNA origami templates. , 2010, Nature nanotechnology.
[37] Shawn M. Douglas,et al. A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads , 2012, Science.
[38] Luvena L. Ong,et al. DNA Brick Crystals with Prescribed Depth , 2014, Nature chemistry.
[39] Veikko Linko,et al. Custom-shaped metal nanostructures based on DNA origami silhouettes. , 2015, Nanoscale.
[40] Jejoong Yoo,et al. De novo reconstruction of DNA origami structures through atomistic molecular dynamics simulation , 2016, Nucleic acids research.
[41] Stefan Raunser,et al. A facile method for preparation of tailored scaffolds for DNA-origami. , 2014, Small.
[42] Adrian Keller,et al. Regular Nanoscale Protein Patterns via Directed Adsorption through Self-Assembled DNA Origami Masks. , 2016, ACS applied materials & interfaces.
[43] Hao Yan,et al. DNA origami with double-stranded DNA as a unified scaffold. , 2012, ACS nano.
[44] Bryan Wei,et al. UNIQUIMER 3D, a software system for structural DNA nanotechnology design, analysis and evaluation , 2009, Nucleic acids research.
[45] F. Simmel,et al. DNA-based self-assembly of chiral plasmonic nanostructures with tailored optical response , 2011, Nature.
[46] Michael Matthies,et al. Block Copolymer Micellization as a Protection Strategy for DNA Origami. , 2017, Angewandte Chemie.
[47] D. Ingber,et al. Self-assembly of 3D prestressed tensegrity structures from DNA , 2010, Nature nanotechnology.
[48] J. Reif,et al. DNA nanotubes self-assembled from triple-crossover tiles as templates for conductive nanowires. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[49] Hao Yan,et al. Complex wireframe DNA origami nanostructures with multi-arm junction vertices. , 2015, Nature nanotechnology.
[50] T. G. Martin,et al. DNA origami gatekeepers for solid-state nanopores. , 2012, Angewandte Chemie.
[51] E. Winfree,et al. Toward reliable algorithmic self-assembly of DNA tiles: a fixed-width cellular automaton pattern. , 2008, Nano letters.
[52] William M. Shih,et al. Virus-Inspired Membrane Encapsulation of DNA Nanostructures To Achieve In Vivo Stability , 2014, ACS nano.
[53] Shawn M. Douglas,et al. Multilayer DNA origami packed on a square lattice. , 2009, Journal of the American Chemical Society.
[54] E. Winfree,et al. Design and characterization of programmable DNA nanotubes. , 2004, Journal of the American Chemical Society.
[55] J. Reif,et al. DNA-Templated Self-Assembly of Protein Arrays and Highly Conductive Nanowires , 2003, Science.
[56] P. Yin,et al. Design space for complex DNA structures. , 2013, Journal of the American Chemical Society.
[57] Hendrik Dietz,et al. How We Make DNA Origami , 2017, Chembiochem : a European journal of chemical biology.
[58] William M. Shih,et al. A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron , 2004, Nature.
[59] Stefan Facsko,et al. Temperature-Dependent Charge Transport through Individually Contacted DNA Origami-Based Au Nanowires. , 2016, Langmuir : the ACS journal of surfaces and colloids.
[60] Hai-Jun Su,et al. Programmable motion of DNA origami mechanisms , 2015, Proceedings of the National Academy of Sciences.
[61] Faisal A. Aldaye,et al. Modular construction of DNA nanotubes of tunable geometry and single- or double-stranded character. , 2009, Nature nanotechnology.
[62] Erik Winfree,et al. An information-bearing seed for nucleating algorithmic self-assembly , 2009, Proceedings of the National Academy of Sciences.
[63] S. Howorka,et al. Self-assembled DNA nanopores that span lipid bilayers. , 2013, Nano letters.
[64] Hao Yan,et al. DNA Gridiron Nanostructures Based on Four-Arm Junctions , 2013, Science.
[65] N. Seeman. DNA in a material world , 2003, Nature.
[66] N. Seeman,et al. Crystalline two-dimensional DNA-origami arrays. , 2011, Angewandte Chemie.
[67] Reza M Zadegan,et al. CAGE: Chromatin Analogous Gene Expression. , 2017, ACS synthetic biology.
[68] K. Gothelf,et al. Multilayer DNA origami packed on hexagonal and hybrid lattices. , 2012, Journal of the American Chemical Society.
[69] Sampo Tuukkanen,et al. One-step large-scale deposition of salt-free DNA origami nanostructures , 2015, Scientific Reports.
[70] William M Shih,et al. DNA nanotubes for NMR structure determination of membrane proteins , 2013, Nature Protocols.
[71] J. Reif,et al. Construction, analysis, ligation, and self-assembly of DNA triple crossover complexes , 2000 .
[72] Jie Song,et al. Reconfiguration of DNA molecular arrays driven by information relay , 2017, Science.
[73] F. Simmel,et al. Surface-assisted large-scale ordering of DNA origami tiles. , 2014, Angewandte Chemie.
[74] Hendrik Dietz,et al. Efficient Production of Single-Stranded Phage DNA as Scaffolds for DNA Origami , 2015, Nano letters.
[75] N. Seeman,et al. DNA double-crossover molecules. , 1993, Biochemistry.
[76] Huilin Li,et al. Lattice engineering through nanoparticle-DNA frameworks. , 2016, Nature materials.
[77] G. Seelig,et al. Dynamic DNA nanotechnology using strand-displacement reactions. , 2011, Nature chemistry.
[78] Fei Zhang,et al. Self-Assembly of Complex DNA Tessellations by Using Low-Symmetry Multi-arm DNA Tiles. , 2016, Angewandte Chemie.
[79] Hélder A Santos,et al. Cellular delivery of enzyme-loaded DNA origami. , 2016, Chemical communications.
[80] T. G. Martin,et al. Rapid Folding of DNA into Nanoscale Shapes at Constant Temperature , 2012, Science.
[81] H. Dietz,et al. Uncovering the forces between nucleosomes using DNA origami , 2016, Science Advances.
[82] A. Kuzyk,et al. Characterization of the conductance mechanisms of DNA origami by AC impedance spectroscopy. , 2009, Small.
[83] Harry M. T. Choi,et al. Programming DNA Tube Circumferences , 2008, Science.
[84] Faisal A. Aldaye,et al. Loading and selective release of cargo in DNA nanotubes with longitudinal variation. , 2010, Nature chemistry.
[85] Chenxiang Lin,et al. Purification of DNA-origami nanostructures by rate-zonal centrifugation , 2012, Nucleic acids research.
[86] Antti-Pekka Eskelinen,et al. Virus-encapsulated DNA origami nanostructures for cellular delivery. , 2014, Nano letters.
[87] Shawn M. Douglas,et al. DNA-nanotube-induced alignment of membrane proteins for NMR structure determination , 2007, Proceedings of the National Academy of Sciences.
[88] Cameron Myhrvold,et al. Isothermal self-assembly of complex DNA structures under diverse and biocompatible conditions. , 2013, Nano letters.
[89] Y. Homma,et al. Correction: Corrigendum: TET2 repression by androgen hormone regulates global hydroxymethylation status and prostate cancer progression , 2015, Nature Communications.
[90] Jejoong Yoo,et al. Large-Conductance Transmembrane Porin Made from DNA Origami , 2016, ACS nano.
[91] P. Tinnefeld,et al. Broadband Fluorescence Enhancement with Self-Assembled Silver Nanoparticle Optical Antennas. , 2017, ACS nano.
[92] Johannes B. Woehrstein,et al. Polyhedra Self-Assembled from DNA Tripods and Characterized with 3D DNA-PAINT , 2014, Science.
[93] Veikko Linko,et al. DNA-Based Enzyme Reactors and Systems , 2016, Nanomaterials.
[94] V. Linko,et al. Defined-size DNA triple crossover construct for molecular electronics: modification, positioning and conductance properties , 2011, Nanotechnology.
[95] Shawn M. Douglas,et al. Self-assembly of DNA into nanoscale three-dimensional shapes , 2009, Nature.
[96] F. Crick,et al. Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid , 1953, Nature.
[97] V. Brusic,et al. Disruption of helix-capping residues 671 and 674 reveals a role in HIV-1 entry for a specialized hinge segment of the membrane proximal external region of gp41. , 2014, Journal of molecular biology.
[98] J. Chao,et al. Folding super-sized DNA origami with scaffold strands from long-range PCR. , 2012, Chemical communications.
[99] Shawn M. Douglas,et al. Folding DNA into Twisted and Curved Nanoscale Shapes , 2009, Science.
[100] H. Sugiyama,et al. Programmed Two-dimensional Self- Assembly of Multiple Dna Origami Jigsaw Pieces Keywords: Dna Origami · Programmed 2d Self-assembly · Jigsaw Pieces · Nanotechnology · Fast-scanning Atomic Force Microscopy , 2022 .
[101] Peng Yin,et al. Developmental Self-Assembly of a DNA Tetrahedron , 2014, ACS nano.
[102] Hao Yan,et al. Challenges and opportunities for structural DNA nanotechnology. , 2011, Nature nanotechnology.
[103] Lei Wang,et al. Molecular behavior of DNA origami in higher-order self-assembly. , 2010, Journal of the American Chemical Society.
[104] Hélder A. Santos,et al. Protein Coating of DNA Nanostructures for Enhanced Stability and Immunocompatibility , 2017, Advanced healthcare materials.
[105] Hao Yan,et al. Organizing DNA origami tiles into larger structures using preformed scaffold frames. , 2011, Nano letters.
[106] P. Yin,et al. Complex shapes self-assembled from single-stranded DNA tiles , 2012, Nature.
[107] S. Howorka,et al. A biomimetic DNA-based channel for the ligand-controlled transport of charged molecular cargo across a biological membrane. , 2016, Nature nanotechnology.
[108] Hao Yan,et al. Scaffolded DNA origami of a DNA tetrahedron molecular container. , 2009, Nano letters.
[109] Pamela E. Constantinou,et al. Architecture with GIDEON, a program for design in structural DNA nanotechnology. , 2006, Journal of molecular graphics & modelling.
[110] J. Reif,et al. Design and construction of double-decker tile as a route to three-dimensional periodic assembly of DNA. , 2011, Journal of the American Chemical Society.
[111] Almogit Abu-Horowitz,et al. Universal computing by DNA origami robots in a living animal , 2014, Nature nanotechnology.
[112] Hao Yan,et al. A study of DNA tube formation mechanisms using 4-, 8-, and 12-helix DNA nanostructures. , 2006, Journal of the American Chemical Society.
[113] Paul W K Rothemund,et al. Optimized assembly and covalent coupling of single-molecule DNA origami nanoarrays. , 2014, ACS nano.
[114] N. Seeman. Nucleic acid junctions and lattices. , 1982, Journal of theoretical biology.
[115] K. Gothelf,et al. AFM Imaging of Hybridization Chain Reaction Mediated Signal Transmission between Two DNA Origami Structures. , 2017, Angewandte Chemie.
[116] Cees Dekker,et al. Ionic permeability and mechanical properties of DNA origami nanoplates on solid-state nanopores. , 2014, ACS nano.
[117] P. Rothemund,et al. Engineering and mapping nanocavity emission via precision placement of DNA origami , 2016, Nature.
[118] Pekka Orponen,et al. DNA rendering of polyhedral meshes at the nanoscale , 2015, Nature.
[119] Friedrich C Simmel,et al. Molecular transport through large-diameter DNA nanopores , 2016, Nature Communications.
[120] T. G. Martin,et al. Facile and Scalable Preparation of Pure and Dense DNA Origami Solutions , 2014, Angewandte Chemie.
[121] Pekka Orponen,et al. Computer‐Aided Production of Scaffolded DNA Nanostructures from Flat Sheet Meshes , 2016, Angewandte Chemie.
[122] P. Rothemund. Folding DNA to create nanoscale shapes and patterns , 2006, Nature.
[123] Veikko Linko,et al. DNA Nanostructures as Smart Drug-Delivery Vehicles and Molecular Devices. , 2015, Trends in biotechnology.
[124] Yonggang Ke,et al. Two design strategies for enhancement of multilayer-DNA-origami folding: underwinding for specific intercalator rescue and staple-break positioning. , 2012, Chemical science.
[125] Veikko Linko,et al. Cationic polymers for DNA origami coating - examining their binding efficiency and tuning the enzymatic reaction rates. , 2016, Nanoscale.
[126] Hendrik Dietz,et al. Self-assembly of genetically encoded DNA-protein hybrid nanoscale shapes , 2017, Science.
[127] H. Dietz,et al. Dynamic DNA devices and assemblies formed by shape-complementary, non–base pairing 3D components , 2015, Science.
[128] T. G. Martin,et al. Synthetic Lipid Membrane Channels Formed by Designed DNA Nanostructures , 2012, Science.
[129] Victor Pan,et al. The Beauty and Utility of DNA Origami , 2017 .
[130] A. Kuzyk,et al. Reconfigurable 3D plasmonic metamolecules. , 2014, Nature materials.
[131] Veikko Linko,et al. Automated design of DNA origami , 2016, Nature Biotechnology.
[132] Fei Zhang,et al. DNA Origami: Scaffolds for Creating Higher Order Structures. , 2017, Chemical reviews.
[133] Reza M Zadegan,et al. Nucleic acid memory. , 2016, Nature materials.
[134] Henry N. Chapman,et al. Correction: Corrigendum: X-ray holography with a customizable reference , 2014, Nature Communications.
[135] Peng Yin,et al. Submicrometre geometrically encoded fluorescent barcodes self-assembled from DNA. , 2012, Nature chemistry.
[136] Yamuna Krishnan,et al. Designing DNA nanodevices for compatibility with the immune system of higher organisms. , 2015, Nature nanotechnology.
[137] Michael Matthies,et al. Design and Synthesis of Triangulated DNA Origami Trusses. , 2016, Nano letters.
[138] Hendrik Dietz,et al. Magnesium-free self-assembly of multi-layer DNA objects , 2012, Nature Communications.
[139] Peng Yin,et al. Casting inorganic structures with DNA molds , 2014, Science.
[140] William M. Shih,et al. Addressing the Instability of DNA Nanostructures in Tissue Culture , 2014, ACS nano.
[141] David J. Mooney,et al. Oligolysine-based coating protects DNA nanostructures from low-salt denaturation and nuclease degradation , 2017, Nature Communications.
[142] J. Liddle,et al. Molecular Precision at Micrometer Length Scales: Hierarchical Assembly of DNA-Protein Nanostructures. , 2017, ACS nano.
[143] Jie Chao,et al. DNA origami-based shape IDs for single-molecule nanomechanical genotyping , 2017, Nature Communications.
[144] J. Kjems,et al. Complexes of DNA with fluorescent dyes are effective reagents for detection of autoimmune antibodies , 2017, Scientific Reports.
[145] Hao Yan,et al. Interenzyme substrate diffusion for an enzyme cascade organized on spatially addressable DNA nanostructures. , 2012, Journal of the American Chemical Society.
[146] Mette D. E. Jepsen,et al. Construction of a 4 zeptoliters switchable 3D DNA box origami. , 2012, ACS nano.
[147] E. Winfree,et al. Algorithmic Self-Assembly of DNA Sierpinski Triangles , 2004, PLoS biology.
[148] Nicholas A W Bell,et al. DNA origami nanopores. , 2012, Nano letters.
[149] Johannes B. Woehrstein,et al. Multiplexed 3D Cellular Super-Resolution Imaging with DNA-PAINT and Exchange-PAINT , 2014, Nature Methods.
[150] Pamela E. Constantinou,et al. From Molecular to Macroscopic via the Rational Design of a Self-Assembled 3D DNA Crystal , 2009, Nature.
[151] T. Liedl,et al. Folding DNA origami from a double-stranded source of scaffold. , 2009, Journal of the American Chemical Society.
[152] Hendrik Dietz,et al. Nanoscale rotary apparatus formed from tight-fitting 3D DNA components , 2016, Science Advances.
[153] Mark Bathe,et al. A primer to scaffolded DNA origami , 2011, Nature Methods.