NDRG4 hypermethylation is a potential biomarker for diagnosis and prognosis of gastric cancer in Chinese population

In order to assess whether N-Myc downstream regulated gene 4 (NDRG4) methylation was associated with the diagnosis and prognosis of gastric cancer, we measured the methylation of NDRG4 promoter and gene body regions among 110 gastric cancer patients using quantitative methods (MethyLight and pyrosequencing). Both NDRG4 promoter and gene body methylation levels were increased in tumor tissues than paired adjacent normal tissues (P < 0.001). NDRG4 gene body methylation was found to be significantly associated with age and tumor differentiation. NDRG4 promoter hypermethylation was proved to be a predictor of poor overall survival. However, opposite result was observed among The Cancer Genome Atlas (TCGA) cohort. The findings from gastric cell lines and public databases have suggested that NDRG4 methylation level was inversely associated with NDRG4 transcription level. Subsequent luciferase reporter gene assay showed that promoter CpG island but not gene body CpG island was able to upregulate gene expression. Collectively, NDRG4 promoter hypermethylation contributed to the risk of gastric cancer and predicted a poor prognosis in Chinese gastric cancer patients. Moreover, the combined methylation levels of NDRG4 promoter and gene body served as diagnostic biomarkers in gastric cancer.

[1]  L. Helyer,et al.  A systematic review of the accuracy and indications for diagnostic laparoscopy prior to curative-intent resection of gastric cancer , 2012, Gastric Cancer.

[2]  E. Souied,et al.  [Multicolor imaging in a case of acute macular neuroretinopathy]. , 2015, Journal francais d'ophtalmologie.

[3]  Jianhua Lin,et al.  Etiology and Prevention of Gastric Cancer , 2016, Gastrointestinal Tumors.

[4]  J. Jaboin,et al.  NDRG4 is a novel oncogenic protein and p53 associated regulator of apoptosis in malignant meningioma cells , 2015, Oncotarget.

[5]  Jianchun Yu,et al.  Significance of Serum Pepsinogens as a Biomarker for Gastric Cancer and Atrophic Gastritis Screening: A Systematic Review and Meta-Analysis , 2015, PloS one.

[6]  K. Arii,et al.  Serum pepsinogen and gastric cancer screening. , 2007, Internal medicine.

[7]  P. Laird,et al.  MethyLight: a high-throughput assay to measure DNA methylation. , 2000, Nucleic acids research.

[8]  B. Kim,et al.  The impact of old age on surgical outcomes of totally laparoscopic gastrectomy for gastric cancer , 2013, Surgical Endoscopy.

[9]  R. Burbano,et al.  DNA and histone methylation in gastric carcinogenesis. , 2013, World journal of gastroenterology.

[10]  S. Duan,et al.  SSTR2 promoter hypermethylation is associated with the risk and progression of laryngeal squamous cell carcinoma in males , 2016, Diagnostic Pathology.

[11]  M. Raimondo,et al.  New DNA Methylation Markers for Pancreatic Cancer: Discovery, Tissue Validation, and Pilot Testing in Pancreatic Juice , 2015, Clinical Cancer Research.

[12]  Y. Jung,et al.  Field Cancerization in Sporadic Colon Cancer , 2016, Gut and liver.

[13]  D. Ransohoff,et al.  Multitarget stool DNA testing for colorectal-cancer screening. , 2014, The New England journal of medicine.

[14]  K. Hopkins,et al.  A pilot study of glioblastoma multiforme in elderly patients: Treatments, O-6-methylguanine-DNA methyltransferase (MGMT) methylation status and survival , 2013, Clinical Neurology and Neurosurgery.

[15]  P. Hou,et al.  Hypermethylation in gastric cancer. , 2015, Clinica chimica acta; international journal of clinical chemistry.

[16]  D. Ahlquist,et al.  Stool DNA testing for the detection of pancreatic cancer , 2012, Cancer.

[17]  D. Ward,et al.  Macrophage migration inhibitory factor and DJ-1 in gastric cancer: differences between high-incidence and low-incidence areas , 2012, British Journal of Cancer.

[18]  S. Duan,et al.  Meta-analyses of gene methylation and smoking behavior in non-small cell lung cancer patients , 2015, Scientific Reports.

[19]  V. Canzonieri,et al.  Multimodal approach of advanced gastric cancer: based therapeutic algorithm. , 2016, European review for medical and pharmacological sciences.

[20]  Yon Hui Kim,et al.  Identifying molecular drivers of gastric cancer through next-generation sequencing. , 2013, Cancer letters.

[21]  K. Miyazaki,et al.  Methylation-mediated gene silencing as biomarkers of gastric cancer: a review. , 2014, World journal of gastroenterology.

[22]  K. Miyazaki,et al.  Aberrant methylation of p16 predicts candidates for 5-fluorouracil-based adjuvant therapy in gastric cancer patients , 2007, Journal of Gastroenterology.

[23]  J. Xu,et al.  Expression status of fatty acid synthase (FAS) but not HER2 is correlated with the differentiation grade and prognosis of esophageal carcinoma. , 2012, Hepato-gastroenterology.

[24]  Yanhui Liu,et al.  Gain of Function of Mutant TP53 in Glioblastoma: Prognosis and Response to Temozolomide , 2014, Annals of Surgical Oncology.

[25]  P. Laird,et al.  Fields of aberrant CpG island hypermethylation in Barrett's esophagus and associated adenocarcinoma. , 2000, Cancer research.

[26]  Jae-Geun Yoon,et al.  NDRG4 is downregulated in glioblastoma and inhibits cell proliferation. , 2012, Omics : a journal of integrative biology.

[27]  D. Albertson,et al.  Chromosome aberrations in solid tumors , 2003, Nature Genetics.

[28]  J Riedemann,et al.  REGULATION OF GENE EXPRESSION BY GC‐RICH DNA CIS ‐ELEMENTS , 2001, Cell biology international.

[29]  R. G. C. C. L. Cardenas,et al.  Exome sequencing identifies a novel homozygous variant in NDRG4 in a family with infantile myofibromatosis. , 2014, European journal of medical genetics.

[30]  M. Kanda,et al.  Adverse prognostic impact of perioperative allogeneic transfusion on patients with stage II/III gastric cancer , 2014, Gastric Cancer.

[31]  W. Allum,et al.  Does surgery have a role in managing incurable gastric cancer? , 2015, Nature Reviews Clinical Oncology.

[32]  Timothy E. Reddy,et al.  Dynamic DNA methylation across diverse human cell lines and tissues , 2013, Genome research.

[33]  C. Carlson,et al.  Genetic Variation and Reproductive Timing: African American Women from the Population Architecture Using Genomics and Epidemiology (PAGE) Study , 2013, PloS one.

[34]  Wei Wang,et al.  Clinical significance and diagnostic value of serum CEA, CA19-9 and CA72-4 in patients with gastric cancer , 2016, Oncotarget.

[35]  G. Liang,et al.  PAX6 methylation and ectopic expression in human tumor cells , 2000, International journal of cancer.

[36]  Fuchu He,et al.  Characterization and expression of three novel differentiation-related genes belong to the human NDRG gene family , 2004, Molecular and Cellular Biochemistry.

[37]  Jae Yong Cho,et al.  Molecular Diagnosis for Personalized Target Therapy in Gastric Cancer , 2013, Journal of gastric cancer.

[38]  Ling Wang,et al.  Mixture SNPs effect on phenotype in genome-wide association studies , 2015, BMC Genomics.

[39]  D. Hallahan,et al.  NDRG4, the N-Myc downstream regulated gene, is important for cell survival, tumor invasion and angiogenesis in meningiomas. , 2012, Integrative biology : quantitative biosciences from nano to macro.

[40]  Weiwei Dong,et al.  Quantitative detection of methylated NDRG4 gene as a candidate biomarker for diagnosis of colorectal cancer , 2014, Oncology letters.

[41]  M. Kanda,et al.  Recent advances in the molecular diagnostics of gastric cancer. , 2015, World journal of gastroenterology.

[42]  Bin Zhang,et al.  Molecular classification and prediction in gastric cancer , 2015, Computational and structural biotechnology journal.

[43]  A. Kazlauskas,et al.  Glioma Malignancy-Dependent NDRG2 Gene Methylation and Downregulation Correlates with Poor Patient Outcome , 2014, Journal of Cancer.

[44]  Genome-scale methylation assessment did not identify prognostic biomarkers in oral tongue carcinomas , 2016, Clinical Epigenetics.

[45]  S. Duan,et al.  OPRK1 promoter hypermethylation increases the risk of Alzheimer’s disease , 2015, Neuroscience Letters.

[46]  Sung-Liang Yu,et al.  DNA Hypermethylation of SHISA3 in Colorectal Cancer: An Independent Predictor of Poor Prognosis , 2015, Annals of Surgical Oncology.

[47]  M. Roberti,et al.  Identification of human GC‐box‐binding zinc finger protein, a new Krüppel‐like zinc finger protein, by the yeast one‐hybrid screening with a GC‐rich target sequence , 1999, FEBS letters.

[48]  Jian-Hua Fu,et al.  Decreased mRNA expression of transcription factor forkhead box F2 is an indicator of poor prognosis in patients with resected esophageal squamous cell carcinoma. , 2015, Molecular and clinical oncology.

[49]  J. Joo,et al.  Individual having a parent with early-onset gastric cancer may need screening at younger age. , 2015, World journal of gastroenterology.

[50]  Shiliang Huang,et al.  DNA methylation analysis of SFRP2, GATA4/5, NDRG4 and VIM for the detection of colorectal cancer in fecal DNA , 2014, Oncology letters.

[51]  T. Tahara,et al.  DNA methylation as a molecular biomarker in gastric cancer. , 2015, Epigenomics.

[52]  Christian Gieger,et al.  Common variants at ten loci modulate the QT interval duration in the QTSCD Study , 2009, Nature Genetics.

[53]  Peter A. Jones Functions of DNA methylation: islands, start sites, gene bodies and beyond , 2012, Nature Reviews Genetics.

[54]  M. Rhyu,et al.  DNA Methylation as Surrogate Marker For Gastric Cancer , 2015, Journal of cancer prevention.

[55]  Xiao-Fan Wang,et al.  NDRG4 Is Required for Cell Cycle Progression and Survival in Glioblastoma Cells* , 2009, The Journal of Biological Chemistry.

[56]  P. Laird,et al.  Adenocarcinoma Epigenetic Patterns in the Progression of Esophageal Updated Version , 2001 .

[57]  Gangning Liang,et al.  Gene body methylation can alter gene expression and is a therapeutic target in cancer. , 2014, Cancer cell.

[58]  Qingchuan Zhao,et al.  NDRG4, a novel candidate tumor suppressor, is a predictor of overall survival of colorectal cancer patients , 2015, Oncotarget.

[59]  N. Pavletich,et al.  Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A , 1991, Science.

[60]  Xinxin Yang,et al.  NDRG3 and NDRG4, two novel tumor-related genes. , 2013, Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie.

[61]  M. Barmada,et al.  Genome-Wide Association Study of Antiphospholipid Antibodies , 2013, Autoimmune diseases.

[62]  S. Duan,et al.  BCL11A gene DNA methylation contributes to the risk of type 2 diabetes in males , 2014, Experimental and therapeutic medicine.

[63]  Epigenetics in esophageal cancers , 2014, Cell and Tissue Research.

[64]  J. Herman,et al.  N-Myc downstream-regulated gene 4 (NDRG4): a candidate tumor suppressor gene and potential biomarker for colorectal cancer. , 2009, Journal of the National Cancer Institute.

[65]  Mitsuro KandaDaisuke Adverse prognostic impact of perioperative allogeneic transfusion on patients with stage II/III gastric cancer , 2016 .

[66]  Shuji Ogino,et al.  Precision and performance characteristics of bisulfite conversion and real-time PCR (MethyLight) for quantitative DNA methylation analysis. , 2006, The Journal of molecular diagnostics : JMD.

[67]  V. Margulis,et al.  Validation of DAB2IP methylation and its relative significance in predicting outcome in renal cell carcinoma , 2016, Oncotarget.

[68]  Z. Ling,et al.  Circulating Methylated XAF1 DNA Indicates Poor Prognosis for Gastric Cancer , 2013, PloS one.

[69]  Peter Molloy,et al.  Conversion-specific detection of DNA methylation using real-time polymerase chain reaction (ConLight-MSP) to avoid false positives. , 2002, Methods.

[70]  Huilong Duan,et al.  TCGA4U: A Web-Based Genomic Analysis Platform To Explore And Mine TCGA Genomic Data For Translational Research , 2015, MedInfo.