Personalized e-learning environment for bioinformatics

In recent years, the pervasive use of computers and the Internet has created an unprecedented environment for e-learning. However, the rapid expansion in the number of disparate information sources and variety of data available affects e-learning significantly. Nonetheless, there has been a growing awareness that courseware should automatically adjust to the profiles of individual learners. Over the past few years, much effort has been expended to enable personalization for e-learning by semantic web techniques. Although the semantic web offers a theoretical framework for flexibility and interoperability in e-learning resources, there is no consensus ontology that can be used to describe learning profiles directly for personal e-learning environments. This means that their actual applications are as yet unknown. Positing that ontologies actually provide viable solutions for knowledge management, in this article, we present a three-module architecture for a personalized e-learning environment for bioinformatics. The architecture facilitates a personalized e-material recommender that does item-based collaborative filtering (CF) + adapted vector space model (VSM), explicit and implicit scoring, and a concept of tasks focused on rating literature for the e-learner. Meanwhile, the knowledge discovery process can be tailored to acquiring knowledge for professional requirements. Validation for our architecture is provided by a case study for biological institutions. The experimental results show that our architecture is helpful for professional requirements, improving recommendation quality, and satisfying users.

[1]  Mark Gerstein,et al.  Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications , 2007, Bioinform..

[2]  Siu Cheung Hui,et al.  Automatic fuzzy ontology generation for semantic Web , 2006, IEEE Transactions on Knowledge and Data Engineering.

[3]  Nabil Sultan,et al.  loud computing for education : A new dawn ? , 2009 .

[4]  Yau-Hwang Kuo,et al.  Automated ontology construction for unstructured text documents , 2007, Data & Knowledge Engineering.

[5]  Huajun Chen,et al.  The Semantic Web , 2011, Lecture Notes in Computer Science.

[6]  Nikola Kasabov,et al.  Evolving ontologies for intelligent decision support , 2006, Fuzzy Logic and the Semantic Web.

[7]  Yorick Wilks,et al.  User-Centred Ontology Learning for Knowledge Management , 2002, NLDB.

[8]  Sebastián Ventura,et al.  Data mining in course management systems: Moodle case study and tutorial , 2008, Comput. Educ..

[9]  James M. Keller,et al.  Fuzzy Measures on the Gene Ontology for Gene Product Similarity , 2006, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

[10]  F HueteJuan,et al.  Combining content-based and collaborative recommendations , 2010 .

[11]  Helmut Schmidt,et al.  Probabilistic part-of-speech tagging using decision trees , 1994 .

[12]  Darina Dicheva,et al.  Ontologies and Semantic Web for E-Learning , 2008 .

[13]  Nancy Virgil Morgan An overview of metadata for e-learning, focusing on the Gateway to Educational Materials and activities of the Dublin Core Education Working Group , 2003, 2003 Symposium on Applications and the Internet Workshops, 2003. Proceedings..

[14]  Michael J. Wise,et al.  LEAping to conclusions: A computational reanalysis of late embryogenesis abundant proteins and their possible roles , 2003, BMC Bioinformatics.

[15]  Yoav Shoham,et al.  Fab: content-based, collaborative recommendation , 1997, CACM.

[16]  Analía Amandi,et al.  eTeacher: Providing personalized assistance to e-learning students , 2008, Comput. Educ..

[17]  M. Sugeno FUZZY MEASURES AND FUZZY INTEGRALS—A SURVEY , 1993 .

[18]  Christos Papatheodorou,et al.  Discovering Ontologies for e-Learning Platforms , 2006, SETN.

[19]  Abdus Sattar Chaudhry,et al.  Learning objects application profile for granularity and reusability: integrating Dublin Core with IEEE-LOM , 2007 .

[20]  Vladan Devedzic,et al.  Web Intelligence and Artificial Intelligence in Education , 2004, J. Educ. Technol. Soc..

[21]  Gerard Salton,et al.  Another look at automatic text-retrieval systems , 1986, CACM.

[22]  Joseph A. Konstan,et al.  Content-Independent Task-Focused Recommendation , 2001, IEEE Internet Comput..

[23]  Hahn-Ming Lee,et al.  Personalized e-learning system using Item Response Theory , 2005, Comput. Educ..

[24]  Alexandra I. Cristea,et al.  What can the Semantic Web do for Adaptive Educational Hypermedia? , 2004, J. Educ. Technol. Soc..

[25]  Gordon I. McCalla,et al.  Evaluating a Smart Recommender for an Evolving E-learning System: A Simulation-Based Study , 2004, Canadian Conference on AI.

[26]  Haixu Tang,et al.  MedBlast: searching articles related to a biological sequence , 2004, Bioinform..

[27]  Tomonari Kamba,et al.  Learning Personal Preferences on Online Newspaper Articles from User Behaviors , 1997, Comput. Networks.

[28]  Carole A. Goble,et al.  Ontologies in Bioinformatics , 2004, Handbook on Ontologies.

[29]  Dik Lun Lee,et al.  Document Ranking and the Vector-Space Model , 1997, IEEE Softw..

[30]  Vladan Deved Web Intelligence and Artificial Intelligence in Education , 2004 .

[31]  Peter Dolog,et al.  Reasoning and Ontologies for Personalized E-Learning in the Semantic Web , 2004, J. Educ. Technol. Soc..

[32]  M. Vihinen,et al.  Virtual bioinformatics distance learning suite * , 2004, Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology.

[33]  Philip S. Yu,et al.  A new method to measure the semantic similarity of GO terms , 2007, Bioinform..

[34]  Semantic Web Technologies for e-Learning , 2009, The Future of Learning.

[35]  Vladimir Goodkovsky e-Learning Powered by Intelligent Tutoring , 2006 .

[36]  Mohamed Jemni,et al.  Automatic Recommendations for E-Learning Personalization Based on Web Usage Mining Techniques and Information Retrieval , 2008, 2008 Eighth IEEE International Conference on Advanced Learning Technologies.

[37]  S. C. Hui,et al.  Automatic Generation of Ontology for Scholarly Semantic Web , 2004, SEMWEB.

[38]  William W. Cohen,et al.  Recommendation : A Study in Combining Multiple Information Sources , 2007 .

[39]  Wei-Pang Yang,et al.  A New Content-Based Access Method for Video Databases , 1999, Inf. Sci..

[40]  Ioannis Hatzilygeroudis,et al.  A Web-Based Intelligent Tutoring System Using Hybrid Rules as Its Representational Basis , 2002, Intelligent Tutoring Systems.

[41]  Gilad Ravid,et al.  How social motivation enhances economic activity and incentives in the Google Answers knowledge sharing market , 2007, Int. J. Knowl. Learn..

[42]  Yi-Cheng Ku,et al.  A semantic-expansion approach to personalized knowledge recommendation , 2008, Decis. Support Syst..

[43]  Haiyuan Yu,et al.  Developing a similarity measure in biological function space , 2007 .

[44]  Jung-Hsien Chiang,et al.  MeKE: Discovering the Functions of Gene Products from Biomedical Literature Via Sentence Alignment , 2003, Bioinform..

[45]  Sophia Ananiadou,et al.  Developing a Robust Part-of-Speech Tagger for Biomedical Text , 2005, Panhellenic Conference on Informatics.

[46]  Chakkrit Snae,et al.  Ontology-Driven E-Learning System Based on Roles and Activities for Thai Learning Environment , 2007 .

[47]  Hugh C. Davis,et al.  The evolution of metadata from standards to semantics in E-learning applications , 2006, HYPERTEXT '06.

[48]  Chi-Hoon Lee,et al.  Web personalization expert with combining collaborative filtering and association rule mining technique , 2001, Expert Syst. Appl..

[49]  Lawrence B. Holder,et al.  Substructure Discovery Using Minimum Description Length and Background Knowledge , 1993, J. Artif. Intell. Res..

[50]  George Karypis,et al.  Item-based top-N recommendation algorithms , 2004, TOIS.

[51]  Gyung-Leen Park,et al.  On employing ontology to e-learning , 2005, Fourth Annual ACIS International Conference on Computer and Information Science (ICIS'05).

[52]  Yang Dai,et al.  Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction , 2006, BMC Bioinformatics.

[53]  Eric Horvitz,et al.  Collaborative Filtering by Personality Diagnosis: A Hybrid Memory and Model-Based Approach , 2000, UAI.

[54]  Yoichi Shinoda,et al.  Information filtering based on user behavior analysis and best match text retrieval , 1994, SIGIR '94.

[55]  C. Lee Giles,et al.  A system for automatic personalized tracking of scientific literature on the Web , 1999, DL '99.

[56]  Madan M. Gupta,et al.  Fuzzy automata and decision processes , 1977 .

[57]  Zhu Xin-juan,et al.  Ontology Based Sharing and Services in E-Learning Repository , 2007, 2007 IFIP International Conference on Network and Parallel Computing Workshops (NPC 2007).

[58]  Gerd Wagner,et al.  Ontologies and the Semantic Web for E-learning (Guest editorial) , 2004, J. Educ. Technol. Soc..

[59]  Marco Ronchetti,et al.  Deriving Ontology-Based Metadata for E-Learning form the ACM Computing Curricula , 2003 .

[60]  Gordon I. McCalla,et al.  Smart Recommendation for an Evolving E-Learning System: Architecture and Experiment , 2005 .

[61]  George Karypis,et al.  Evaluation of Item-Based Top-N Recommendation Algorithms , 2001, CIKM '01.

[62]  J. Jankowski,et al.  Adapting informal sources of knowledge to e-Learning , 2007 .

[63]  Siu Cheung Hui,et al.  Automatic fuzzy ontology generation for semantic help-desk support , 2006, IEEE Transactions on Industrial Informatics.

[64]  Bart Selman,et al.  Referral Web: combining social networks and collaborative filtering , 1997, CACM.

[65]  S. R. Heiyanthuduwage,et al.  A Learner Oriented Ontology Of Metadata To Improve Effectiveness Of Learning Management Systems. , 2006 .

[66]  Karen Spärck Jones Reflections on TREC , 1995, Inf. Process. Manag..

[67]  Peter D. Karp,et al.  The EcoCyc Database , 2002, Nucleic Acids Res..

[68]  Hei-Chia Wang,et al.  PKR: A Personalized Knowledge Recommendation System for Virtual Research Communities , 2007, J. Comput. Inf. Syst..

[69]  Ian H. Witten,et al.  Data mining: practical machine learning tools and techniques with Java implementations , 2002, SGMD.