Protein structure prediction using particle swarm optimization and a distributed parallel approach
暂无分享,去创建一个
[1] J. S. Vesterstrom,et al. Division of labor in particle swarm optimisation , 2002, Proceedings of the 2002 Congress on Evolutionary Computation. CEC'02 (Cat. No.02TH8600).
[2] Giancarlo Mauri,et al. A study of parallel and distributed particle swarm optimization methods , 2010, BADS '10.
[3] Xiao-Feng Xie,et al. Handling boundary constraints for numerical optimization by particle swarm flying in periodic search space , 2004, Proceedings of the 2004 Congress on Evolutionary Computation (IEEE Cat. No.04TH8753).
[4] A. Groenwold,et al. Comparison of linear and classical velocity update rules in particle swarm optimization: notes on scale and frame invariance , 2007 .
[5] W. Delano. The PyMOL Molecular Graphics System , 2002 .
[6] Domenico Gallipoli,et al. Parallel Hybrid Particle Swarm Optimization and Applications in Geotechnical Engineering , 2009, ISICA.
[7] Wei Peng,et al. The Inverse Protein Folding Process by Artificial Life Approaches , 2008, 2008 International Conference on Internet Computing in Science and Engineering.
[8] Bo Li,et al. Communication Latency Tolerant Parallel Algorithm for Particle Swarm Optimization , 2009, 2009 Fourth International Conference on Frontier of Computer Science and Technology.
[9] A. Groenwold,et al. Comparison of linear and classical velocity update rules in particle swarm optimization: notes on diversity , 2007 .
[10] Bo Li,et al. Parallelizing particle swarm optimization , 2005, PACRIM. 2005 IEEE Pacific Rim Conference on Communications, Computers and signal Processing, 2005..
[11] O. Becker,et al. Solvent effects on the energy landscapes and folding kinetics of polyalanine , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[12] Xiaolong Zhang,et al. Improved Particle Swarm Optimization Algorithm for 2D Protein Folding Prediction , 2007, 2007 1st International Conference on Bioinformatics and Biomedical Engineering.
[13] Christodoulos A. Floudas,et al. A review of recent advances in global optimization , 2009, J. Glob. Optim..
[14] Riccardo Poli,et al. Particle swarm optimization , 1995, Swarm Intelligence.
[15] B J Fregly,et al. Parallel global optimization with the particle swarm algorithm , 2004, International journal for numerical methods in engineering.
[16] Cheng-Jian Lin,et al. An efficient hybrid Taguchi-genetic algorithm for protein folding simulation , 2009, Expert Syst. Appl..
[17] Yong Feng,et al. Chaotic Inertia Weight in Particle Swarm Optimization , 2007, Second International Conference on Innovative Computing, Informatio and Control (ICICIC 2007).
[18] Thomas A. Halgren. Merck molecular force field. I. Basis, form, scope, parameterization, and performance of MMFF94 , 1996, J. Comput. Chem..
[19] G. Schneider,et al. Protein Folding Simulation by Particle Swarm Optimization , 2007 .
[20] Jaroslaw Sobieszczanski-Sobieski,et al. A Parallel Particle Swarm Optimization Algorithm Accelerated by Asynchronous Evaluations , 2005 .
[21] Kevin D. Seppi,et al. Parallel PSO using MapReduce , 2007, 2007 IEEE Congress on Evolutionary Computation.
[22] Katya Rodríguez-Vázquez,et al. Parallel particle swarm optimization applied to the protein folding problem , 2009, GECCO '09.
[23] Amit Konar,et al. Neuro-swarm hybridization for protein tertiary structure prediction , 2008, Int. J. Hybrid Intell. Syst..
[24] A. Sali,et al. Protein Structure Prediction and Structural Genomics , 2001, Science.
[25] Faisal N. Abu-Khzam,et al. Particle swarm optimization approach for protein structure prediction in the 3D HP model , 2009, Interdisciplinary Sciences: Computational Life Sciences.
[26] Byung-Il Koh,et al. Parallel asynchronous particle swarm optimization , 2006, International journal for numerical methods in engineering.
[27] Hwa-Seok Lee,et al. PC Cluster based Parallel PSO Algorithm for Optimal Power Flow , 2007, 2007 International Conference on Intelligent Systems Applications to Power Systems.
[28] Onay Urfalioglu,et al. Robust estimation of camera rotation,translation and focal length at high outlier rates , 2004, First Canadian Conference on Computer and Robot Vision, 2004. Proceedings..
[29] J. Gesell,et al. Structures of the M2 channel-lining segments from nicotinic acetylcholine and NMDA receptors by NMR spectroscopy , 1999, Nature Structural Biology.
[30] Feng Shi,et al. Analysis of Toy Model for Protein Folding Based on Particle Swarm Optimization Algorithm , 2005, ICNC.
[31] C. Anfinsen. Principles that govern the folding of protein chains. , 1973, Science.
[32] Wolfgang Wenzel,et al. Protein Structure Prediction with Stochastic Optimization Methods: Folding and Misfolding the Villin Headpiece , 2004, ICCSA.
[33] Henri Luchian,et al. Protein Structure Prediction in Lattice Models with Particle Swarm Optimization , 2010, ANTS Conference.
[34] Egon L. Willighagen,et al. The Blue Obelisk—Interoperability in Chemical Informatics , 2006, J. Chem. Inf. Model..