Pat1 proteins: a life in translation, translation repression and mRNA decay.

Pat1 proteins are conserved across eukaryotes. Vertebrates have evolved two Pat1 proteins paralogues, whereas invertebrates and yeast only possess one such protein. Despite their lack of known domains or motifs, Pat1 proteins are involved in several key post-transcriptional mechanisms of gene expression control. In yeast, Pat1p interacts with translating mRNPs (messenger ribonucleoproteins), and is responsible for translational repression and decapping activation, ultimately leading to mRNP degradation. Drosophila HPat and human Pat1b (PatL1) proteins also have conserved roles in the 5'→3' mRNA decay pathway. Consistent with their functions in silencing gene expression, Pat1 proteins localize to P-bodies (processing bodies) in yeast, Drosophila, Caenorhabditis elegans and human cells. Altogether, Pat1 proteins may act as scaffold proteins allowing the sequential binding of repression and decay factors on mRNPs, eventually leading to their degradation. In the present mini-review, we present the current knowledge on Pat1 proteins in the context of their multiple functions in post-transcriptional control.

[1]  Henning Urlaub,et al.  The human Pat1b protein: a novel mRNA deadenylation factor identified by a new immunoprecipitation technique , 2010, Nucleic Acids Res..

[2]  S. Balasubramanian,et al.  Distinct functions of maternal and somatic Pat1 protein paralogs. , 2010, RNA.

[3]  R. Parker,et al.  Decapping activators in Saccharomyces cerevisiae act by multiple mechanisms. , 2010, Molecular cell.

[4]  Kimio Tanaka,et al.  Translational repression by the oocyte-specific protein P100 in Xenopus. , 2010, Developmental biology.

[5]  G. Stoecklin,et al.  Human Pat1b Connects Deadenylation with mRNA Decapping and Controls the Assembly of Processing Bodies , 2010, Molecular and Cellular Biology.

[6]  Joerg E Braun,et al.  The C-terminal α–α superhelix of Pat is required for mRNA decapping in metazoa , 2010, The EMBO journal.

[7]  S. Dorner,et al.  The decapping activator HPat a novel factor co-purifying with GW182 from Drosophila cells , 2010, RNA biology.

[8]  Joerg E Braun,et al.  HPat provides a link between deadenylation and decapping in metazoa , 2010, The Journal of cell biology.

[9]  K. Nagashima,et al.  P-Body Components Are Required for Ty1 Retrotransposition during Assembly of Retrotransposition-Competent Virus-Like Particles , 2009, Molecular and Cellular Biology.

[10]  A. Noueiry,et al.  Translation and replication of hepatitis C virus genomic RNA depends on ancient cellular proteins that control mRNA fates , 2009, Proceedings of the National Academy of Sciences.

[11]  S. Tharun Lsm1-7-Pat1 complex: A link between 3’ and 5’-ends in mRNA decay? , 2009, RNA biology.

[12]  Hong Cao,et al.  Cellular microRNA and P bodies modulate host-HIV-1 interactions. , 2009, Molecular cell.

[13]  Y. Lévy,et al.  Suppression of HIV-1 replication by microRNA effectors , 2009, Retrovirology.

[14]  Christopher M. Gallo,et al.  Processing bodies and germ granules are distinct RNA granules that interact in C. elegans embryos. , 2008, Developmental biology.

[15]  S. Tharun,et al.  lsm1 mutations impairing the ability of the Lsm1p-7p-Pat1p complex to preferentially bind to oligoadenylated RNA affect mRNA decay in vivo. , 2008, RNA.

[16]  V. Reinke,et al.  Protection of specific maternal messenger RNAs by the P body protein CGH-1 (Dhh1/RCK) during Caenorhabditis elegans oogenesis , 2008, The Journal of cell biology.

[17]  M. Choder,et al.  Transcription in the nucleus and mRNA decay in the cytoplasm are coupled processes. , 2008, Genes & development.

[18]  N. Standart,et al.  Translational control in early development: CPEB, P-bodies and germinal granules. , 2008, Biochemical Society transactions.

[19]  C. Beckham,et al.  P bodies, stress granules, and viral life cycles. , 2008, Cell host & microbe.

[20]  D. Weil,et al.  CPEB Interacts with an Ovary-specific eIF4E and 4E-T in Early Xenopus Oocytes* , 2007, Journal of Biological Chemistry.

[21]  R. Parker,et al.  Pat1 Contains Distinct Functional Domains That Promote P-Body Assembly and Activation of Decapping , 2007, Molecular and Cellular Biology.

[22]  Thomas Lengauer,et al.  Identification of PatL1, a human homolog to yeast P body component Pat1. , 2007, Biochimica et biophysica acta.

[23]  Peer Bork,et al.  Target-specific requirements for enhancers of decapping in miRNA-mediated gene silencing. , 2007, Genes & development.

[24]  M. Choder,et al.  The Rpb7p subunit of yeast RNA polymerase II plays roles in the two major cytoplasmic mRNA decay mechanisms , 2007, The Journal of cell biology.

[25]  P. Ahlquist,et al.  Interactions between Brome Mosaic Virus RNAs and Cytoplasmic Processing Bodies , 2007, Journal of Virology.

[26]  S. Tharun,et al.  The decapping activator Lsm1p-7p-Pat1p complex has the intrinsic ability to distinguish between oligoadenylated and polyadenylated RNAs. , 2007, RNA.

[27]  J. Keene RNA regulons: coordination of post-transcriptional events , 2007, Nature Reviews Genetics.

[28]  R. Parker,et al.  Analysis of P-body assembly in Saccharomyces cerevisiae. , 2007, Molecular biology of the cell.

[29]  Isabelle Behm-Ansmant,et al.  P-Body Formation Is a Consequence, Not the Cause, of RNA-Mediated Gene Silencing , 2007, Molecular and Cellular Biology.

[30]  Roy Parker,et al.  P bodies and the control of mRNA translation and degradation. , 2007, Molecular cell.

[31]  E. Izaurralde,et al.  P bodies: at the crossroads of post-transcriptional pathways , 2007, Nature Reviews Molecular Cell Biology.

[32]  P. Ahlquist,et al.  Host Deadenylation-Dependent mRNA Decapping Factors Are Required for a Key Step in Brome Mosaic Virus RNA Replication , 2006, Journal of Virology.

[33]  D. Melamed,et al.  The RNA polymerase II subunit Rpb4p mediates decay of a specific class of mRNAs. , 2005, Genes & development.

[34]  Roy Parker,et al.  General Translational Repression by Activators of mRNA Decapping , 2005, Cell.

[35]  J. Pérez-Ortín,et al.  Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms. , 2004, Molecular cell.

[36]  T. Hughes,et al.  Genome-Wide Analysis of mRNA Stability Using Transcription Inhibitors and Microarrays Reveals Posttranscriptional Control of Ribosome Biogenesis Factors , 2004, Molecular and Cellular Biology.

[37]  Roy Parker,et al.  Eukaryotic mRNA decapping. , 2004, Annual review of biochemistry.

[38]  Jianbo Chen,et al.  Yeast Lsm1p-7p/Pat1p Deadenylation-Dependent mRNA-Decapping Factors Are Required for Brome Mosaic Virus Genomic RNA Translation , 2003, Molecular and Cellular Biology.

[39]  Roy Parker,et al.  Decapping and Decay of Messenger RNA Occur in Cytoplasmic Processing Bodies , 2003 .

[40]  John D. Storey,et al.  Precision and functional specificity in mRNA decay , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[41]  Roger E. Moore,et al.  Composition and functional characterization of the yeast spliceosomal penta-snRNP. , 2002, Molecular cell.

[42]  R. Parker,et al.  Targeting an mRNA for decapping: displacement of translation factors and association of the Lsm1p-7p complex on deadenylated yeast mRNAs. , 2001, Molecular cell.

[43]  R. Parker,et al.  The yeast cytoplasmic LsmI/Pat1p complex protects mRNA 3' termini from partial degradation. , 2001, Genetics.

[44]  R. Parker,et al.  mRNA Decapping in Yeast Requires Dissociation of the Cap Binding Protein, Eukaryotic Translation Initiation Factor 4E , 2000, Molecular and Cellular Biology.

[45]  P. Legrain,et al.  Identification of Novel Saccharomyces cerevisiaeProteins with Nuclear Export Activity: Cell Cycle-Regulated Transcription Factor Ace2p Shows Cell Cycle-Independent Nucleocytoplasmic Shuttling , 2000, Molecular and Cellular Biology.

[46]  B. Lapeyre,et al.  The Two Proteins Pat1p (Mrt1p) and Spb8p Interact In Vivo, Are Required for mRNA Decay, and Are Functionally Linked to Pab1p , 2000, Molecular and Cellular Biology.

[47]  Ian Dix,et al.  Yeast Yeast 2000; 17: 95±110. Research Article , 2000 .

[48]  M. Minet,et al.  Deletion of the PAT1 Gene Affects Translation Initiation and Suppresses a PAB1 Gene Deletion in Yeast , 2000, Molecular and Cellular Biology.

[49]  Bertrand Séraphin,et al.  A Sm‐like protein complex that participates in mRNA degradation , 2000, The EMBO journal.

[50]  Jean D. Beggs,et al.  Yeast Sm-like proteins function in mRNA decapping and decay , 2000, Nature.

[51]  Roy Parker,et al.  Mutations in Translation Initiation Factors Lead to Increased Rates of Deadenylation and Decapping of mRNAs inSaccharomyces cerevisiae , 1999, Molecular and Cellular Biology.

[52]  S. Peltz,et al.  Monitoring mRNA decapping activity. , 1999, Methods.

[53]  N. Gray,et al.  Modifications of the 5′ Cap of mRNAs duringXenopus Oocyte Maturation: Independence from Changes in Poly(A) Length and Impact on Translation , 1998, Molecular and Cellular Biology.

[54]  A. Sachs,et al.  Capped mRNA Degradation Intermediates Accumulate in the Yeast spb8-2 Mutant , 1998, Molecular and Cellular Biology.

[55]  R H Borts,et al.  Pat1: a topoisomerase II-associated protein required for faithful chromosome transmission in Saccharomyces cerevisiae. , 1996, Nucleic acids research.

[56]  R. Parker,et al.  Mutations in trans-acting factors affecting mRNA decapping in Saccharomyces cerevisiae , 1996, Molecular and cellular biology.

[57]  M. B. Frank,et al.  Purification, primary structure, bacterial expression and subcellular distribution of an oocyte-specific protein in Xenopus. , 1992, European journal of biochemistry.