A test of ligand field molecular mechanics as an efficient alternative to QM/MM for modelling metalloproteins: the structures of oxidised type I copper centres.
暂无分享,去创建一个
[1] Robert J Deeth,et al. Molecular modelling for coordination compounds: Cu(II)-amine complexes. , 2005, Dalton transactions.
[2] Björn O. Roos,et al. A theoretical study of the copper–cysteine bond in blue copper proteins , 2001 .
[3] B. Roos,et al. The cupric geometry of blue copper proteins is not strained. , 1996, Journal of molecular biology.
[4] Robert K Szilagyi,et al. Electronic structures of metal sites in proteins and models: contributions to function in blue copper proteins. , 2004, Chemical reviews.
[5] Ulf Ryde,et al. Combined quantum and molecular mechanics calculations on metalloproteins. , 2003, Current opinion in chemical biology.
[6] Robert J. Deeth,et al. The ligand field molecular mechanics model and the stereoelectronic effects of d and s electrons , 2001 .
[7] Julian D. Gale,et al. Development of a New Interatomic Potential for the Modeling of Ligand Field Effects , 2001 .
[8] Igor V. Pletnev,et al. Hybrid molecular mechanics: For effective crystal field method for modeling potential energy surfaces of transition metal complexes , 2002 .
[9] M. Bray,et al. The relative performance of the local density approximation and gradient-corrected density functional theory for computing metal-ligand distances in Werner-type and organometallic complexes , 1997 .
[10] R J Williams,et al. Metalloenzymes: the entatic nature of their active sites. , 1968, Proceedings of the National Academy of Sciences of the United States of America.
[11] B. Malmström. Rack-induced bonding in blue-copper proteins. , 1994, European journal of biochemistry.
[12] Robert J. Deeth,et al. Molecular Mechanics for Coordination Complexes: The Impact of Adding d-Electron Stabilization Energies , 1995 .
[13] Peter Comba,et al. Hybrid quantum mechanics/molecular mechanics studies of the active site of the blue copper proteins amicyanin and rusticyanin , 2001 .
[14] Benjamin Williams-Hubbard,et al. DommiMOE: An implementation of ligand field molecular mechanics in the molecular operating environment , 2005, J. Comput. Chem..
[15] Nohad Gresh,et al. Inclusion of the ligand field contribution in a polarizable molecular mechanics: SIBFA‐LF , 2003, J. Comput. Chem..
[16] Abhik Ghosh. Computational bioinorganic chemistry. Part III. The tools of the trade: from high-level ab initio calculations to structural bioinformatics. , 2003, Current opinion in chemical biology.
[17] Peter Comba,et al. Inorganic and bioinorganic molecular mechanics modeling—the problem of the force field parameterization , 2003 .
[18] R. Strange,et al. Atomic resolution crystal structures, EXAFS, and quantum chemical studies of rusticyanin and its two mutants provide insight into its unusual properties. , 2006, Biochemistry.
[19] Harry B. Gray,et al. Copper coordination in blue proteins , 2000, JBIC Journal of Biological Inorganic Chemistry.
[20] A. Warshel. Computer simulations of enzyme catalysis: methods, progress, and insights. , 2003, Annual review of biophysics and biomolecular structure.
[21] Robert J Deeth,et al. Molecular modelling of Jahn-Teller distortions in Cu(II)N6 complexes: elongations, compressions and the pathways in between. , 2006, Dalton transactions.
[22] Peter Comba,et al. A new molecular mechanics force field for the oxidized form of blue copper proteins , 2002, J. Comput. Chem..