Individualized Gaussian process-based prediction and detection of local and global gray matter abnormalities in elderly subjects

Structural imaging based on MRI is an integral component of the clinical assessment of patients with potential dementia. We here propose an individualized Gaussian process-based inference scheme for clinical decision support in healthy and pathological aging elderly subjects using MRI. The approach aims at quantitative and transparent support for clinicians who aim to detect structural abnormalities in patients at risk of Alzheimer's disease or other types of dementia. Firstly, we introduce a generative model incorporating our knowledge about normative decline of local and global gray matter volume across the brain in elderly. By supposing smooth structural trajectories the models account for the general course of age-related structural decline as well as late-life accelerated loss. Considering healthy subjects' demography and global brain parameters as informative about normal brain aging variability affords individualized predictions in single cases. Using Gaussian process models as a normative reference, we predict new subjects' brain scans and quantify the local gray matter abnormalities in terms of Normative Probability Maps (NPM) and global z-scores. By integrating the observed expectation error and the predictive uncertainty, the local maps and global scores exploit the advantages of Bayesian inference for clinical decisions and provide a valuable extension of diagnostic information about pathological aging. We validate the approach in simulated data and real MRI data. We train the GP framework using 1238 healthy subjects with ages 18-94 years, and predict in 415 independent test subjects diagnosed as healthy controls, Mild Cognitive Impairment and Alzheimer's disease.

[1]  J. Trojanowski,et al.  Prediction of MCI to AD conversion, via MRI, CSF biomarkers, and pattern classification , 2011, Neurobiology of Aging.

[2]  Frank Rösler,et al.  Lifespan Development and the Brain: Lifespan Development and the Brain , 2006 .

[3]  Klaus P. Ebmeier,et al.  A meta-analysis of diffusion tensor imaging in mild cognitive impairment and Alzheimer's disease , 2011, Neurobiology of Aging.

[4]  R. McIntosh,et al.  Current tests and trends in single-case neuropsychology , 2011, Cortex.

[5]  A. Simmons,et al.  Combining MRI and CSF measures for classification of Alzheimer's disease and prediction of mild cognitive impairment conversion , 2011, Alzheimer's & Dementia.

[6]  C. Jack,et al.  Longitudinal MRI atrophy biomarkers: Relationship to conversion in the ADNI cohort , 2010, Neurobiology of Aging.

[7]  A. Weindl,et al.  Voxel-Based Morphometry in Individual Patients: A Pilot Study in Early Huntington Disease , 2009, American Journal of Neuroradiology.

[8]  Peter Tiño,et al.  Bridging Paradigms: Hybrid Mechanistic-Discriminative Predictive Models , 2013, IEEE Transactions on Biomedical Engineering.

[9]  Massimo Filippi,et al.  Brain networks in posterior cortical atrophy: A single case tractography study and literature review , 2012, Cortex.

[10]  A. Gelfand,et al.  Gaussian predictive process models for large spatial data sets , 2008, Journal of the Royal Statistical Society. Series B, Statistical methodology.

[11]  L. Jäncke,et al.  Brain structural trajectories over the adult lifespan , 2012, Human brain mapping.

[12]  Alan C. Evans,et al.  Fast and robust parameter estimation for statistical partial volume models in brain MRI , 2004, NeuroImage.

[13]  Christian Gaser,et al.  Partial least squares correlation of multivariate cognitive abilities and local brain structure in children and adolescents , 2013, NeuroImage.

[14]  D. Selkoe Alzheimer's disease. , 2011, Cold Spring Harbor perspectives in biology.

[15]  Karl J. Friston,et al.  Unified segmentation , 2005, NeuroImage.

[16]  Jianhua Z. Huang,et al.  A full scale approximation of covariance functions for large spatial data sets , 2012 .

[17]  Dominik Heider,et al.  Baseline activity predicts working memory load of preceding task condition , 2013, Human brain mapping.

[18]  Arthur F. Kramer,et al.  Age-related differences in regional brain volumes: A comparison of optimized voxel-based morphometry to manual volumetry , 2009, Neurobiology of Aging.

[19]  Paul H. Garthwaite,et al.  Single-case research in neuropsychology: A comparison of five forms of t-test for comparing a case to controls , 2012, Cortex.

[20]  Rachid Deriche,et al.  Unsupervised white matter fiber clustering and tract probability map generation: Applications of a Gaussian process framework for white matter fibers , 2010, NeuroImage.

[21]  Malcolm Atkinson,et al.  Computed tomography perfusion imaging denoising using Gaussian process regression , 2012, Physics in medicine and biology.

[22]  Giuseppe Sartori,et al.  When the single matters more than the group: Very high false positive rates in single case Voxel Based Morphometry , 2013, NeuroImage.

[23]  J. Ashburner,et al.  Voxel-by-Voxel Comparison of Automatically Segmented Cerebral Gray Matter—A Rater-Independent Comparison of Structural MRI in Patients with Epilepsy , 1999, NeuroImage.

[24]  Karl J. Friston,et al.  Generative and recognition models for neuroanatomy , 2004, NeuroImage.

[25]  J. Morris,et al.  The diagnosis of dementia due to Alzheimer’s disease: Recommendations from the National Institute on Aging-Alzheimer’s Association workgroups on diagnostic guidelines for Alzheimer's disease , 2011, Alzheimer's & Dementia.

[26]  G. Wahba Spline models for observational data , 1990 .

[27]  Bharat B. Biswal,et al.  Making data sharing work: The FCP/INDI experience , 2013, NeuroImage.

[28]  Owen Carmichael,et al.  Longitudinal changes in white matter disease and cognition in the first year of the Alzheimer disease neuroimaging initiative. , 2010, Archives of neurology.

[29]  J T O'Brien,et al.  Medial temporal lobe atrophy on MRI differentiates Alzheimer's disease from dementia with Lewy bodies and vascular cognitive impairment: a prospective study with pathological verification of diagnosis. , 2009, Brain : a journal of neurology.

[30]  Geoffrey E. Hinton,et al.  Bayesian Learning for Neural Networks , 1995 .

[31]  Karl J. Friston,et al.  Bayesian decoding of brain images , 2008, NeuroImage.

[32]  Anil F. Ramlackhansingh,et al.  Lesion identification using unified segmentation-normalisation models and fuzzy clustering , 2008, NeuroImage.

[33]  Richard S. Frackowiak,et al.  Generative FDG-PET and MRI Model of Aging and Disease Progression in Alzheimer's Disease , 2013, PLoS Comput. Biol..

[34]  Karl J. Friston,et al.  Voxel-based morphometry of the human brain: Methods and applications , 2005 .

[35]  Frank Rösler,et al.  Lifespan development and the brain: The perspective of biocultural co-constructivism , 2006 .

[36]  D. Louis Collins,et al.  Multivariate analysis of MRI data for Alzheimer's disease, mild cognitive impairment and healthy controls , 2011, NeuroImage.

[37]  Philip Scheltens,et al.  Medial temporal lobe atrophy on MRI predicts dementia in patients with mild cognitive impairment , 2004, Neurology.

[38]  Hanna Damasio,et al.  Evaluation of voxel-based morphometry for focal lesion detection in individuals , 2003, NeuroImage.

[39]  M. Phillips,et al.  Pattern recognition analyses of brain activation elicited by happy and neutral faces in unipolar and bipolar depression , 2012, Bipolar disorders.

[40]  Matthias Bethge,et al.  Gaussian process methods for estimating cortical maps , 2011, NeuroImage.

[41]  Stefan Klöppel,et al.  Multivariate models of inter-subject anatomical variability , 2011, NeuroImage.

[42]  Mark W. Woolrich,et al.  Combined spatial and non-spatial prior for inference on MRI time-series , 2009, NeuroImage.

[43]  Clifford R. Jack,et al.  Diagnostic neuroimaging across diseases , 2011, NeuroImage.

[44]  Christos Davatzikos,et al.  Baseline and longitudinal patterns of brain atrophy in MCI patients, and their use in prediction of short-term conversion to AD: Results from ADNI , 2009, NeuroImage.

[45]  Neda Bernasconi,et al.  Individual voxel-based analysis of gray matter in focal cortical dysplasia , 2006, NeuroImage.

[46]  B. Drayer,et al.  Imaging of the Aging Brain , 2005 .

[47]  Karl J. Friston,et al.  Voxel-Based Morphometry—The Methods , 2000, NeuroImage.

[48]  Karl J. Friston,et al.  Distributional Assumptions in Voxel-Based Morphometry , 2002, NeuroImage.

[49]  Cathy J. Price,et al.  Predicting outcome and recovery after stroke with lesions extracted from MRI images , 2013, NeuroImage: Clinical.

[50]  Anders M. Dale,et al.  When does brain aging accelerate? Dangers of quadratic fits in cross-sectional studies , 2010, NeuroImage.

[51]  Nick C Fox,et al.  The clinical use of structural MRI in Alzheimer disease , 2010, Nature Reviews Neurology.

[52]  Richard S. J. Frackowiak,et al.  How early can we predict Alzheimer's disease using computational anatomy? , 2013, Neurobiology of Aging.

[53]  K. Lesch,et al.  Integrating neurobiological markers of depression. , 2010, Archives of general psychiatry.

[54]  Stefan Klöppel,et al.  BrainAGE in Mild Cognitive Impaired Patients: Predicting the Conversion to Alzheimer’s Disease , 2013, PloS one.

[55]  J. O'Brien,et al.  PET imaging of brain amyloid in dementia: a review , 2011, International journal of geriatric psychiatry.

[56]  Nick C Fox,et al.  Automatic classification of MR scans in Alzheimer's disease. , 2008, Brain : a journal of neurology.

[57]  A. Dale,et al.  Critical ages in the life course of the adult brain: nonlinear subcortical aging , 2013, Neurobiology of Aging.

[58]  Jonathan E. Peelle,et al.  Adjusting for global effects in voxel-based morphometry: Gray matter decline in normal aging , 2012, NeuroImage.

[59]  Jagath C. Rajapakse,et al.  Statistical approach to segmentation of single-channel cerebral MR images , 1997, IEEE Transactions on Medical Imaging.

[60]  Ulman Lindenberger,et al.  Trajectories of brain aging in middle-aged and older adults: Regional and individual differences , 2010, NeuroImage.

[61]  Nikolaus Weiskopf,et al.  A comparison between voxel-based cortical thickness and voxel-based morphometry in normal aging , 2009, NeuroImage.

[62]  Christian Gaser,et al.  Models of the Aging Brain Structure and Individual Decline , 2012, Front. Neuroinform..

[63]  F. Fazio,et al.  Role of Integrated 18-F FDG PET/CT in Recurrent Ovarian Cancer , 2005 .

[64]  Carl E. Rasmussen,et al.  A Unifying View of Sparse Approximate Gaussian Process Regression , 2005, J. Mach. Learn. Res..

[65]  Ronald M. Summers,et al.  Gaussian Process Inference for Estimating Pharmacokinetic Parameters of Dynamic Contrast-Enhanced MR Images , 2012, MICCAI.

[66]  Cheryl L. Dahle,et al.  Regional brain changes in aging healthy adults: general trends, individual differences and modifiers. , 2005, Cerebral cortex.

[67]  Richard S. J. Frackowiak,et al.  A voxel‐based morphometry study of semantic dementia: Relationship between temporal lobe atrophy and semantic memory , 2000, Annals of neurology.

[68]  John Ashburner,et al.  A fast diffeomorphic image registration algorithm , 2007, NeuroImage.

[69]  Nicola Toschi,et al.  Relevance of magnetic resonance imaging for early detection and diagnosis of Alzheimer disease. , 2013, The Medical clinics of North America.

[70]  S. Resnick,et al.  Longitudinal progression of Alzheimer's-like patterns of atrophy in normal older adults: the SPARE-AD index. , 2009, Brain : a journal of neurology.

[71]  D. Cox,et al.  An Analysis of Transformations , 1964 .

[72]  Karl J. Friston,et al.  A Voxel-Based Morphometric Study of Ageing in 465 Normal Adult Human Brains , 2001, NeuroImage.

[73]  Carl E. Rasmussen,et al.  Gaussian processes for machine learning , 2005, Adaptive computation and machine learning.

[74]  Hyun-Chul Kim,et al.  Bayesian Gaussian Process Classification with the EM-EP Algorithm , 2006, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[75]  Stefan Klöppel,et al.  Estimating the age of healthy subjects from T1-weighted MRI scans using kernel methods: Exploring the influence of various parameters , 2010, NeuroImage.

[76]  D. Hassabis,et al.  Autobiographical memory in semantic dementia: A longitudinal fMRI study , 2010, Neuropsychologia.

[77]  Geoffrey E. Hinton,et al.  Evaluation of Gaussian processes and other methods for non-linear regression , 1997 .

[78]  J. Weston,et al.  Approximation Methods for Gaussian Process Regression , 2007 .

[79]  William D. Penny,et al.  Comparing Dynamic Causal Models using AIC, BIC and Free Energy , 2012, NeuroImage.

[80]  C. Jack,et al.  Ways toward an early diagnosis in Alzheimer’s disease: The Alzheimer’s Disease Neuroimaging Initiative (ADNI) , 2005, Alzheimer's & Dementia.

[81]  A. Dale,et al.  Accelerating cortical thinning: unique to dementia or universal in aging? , 2014, Cerebral cortex.

[82]  N. Raz,et al.  Differential Aging of the Brain: Patterns, Cognitive Correlates and Modifiers , 2022 .

[83]  Hellmuth Obrig,et al.  Focal Retrograde Amnesia: Voxel-Based Morphometry Findings in a Case without MRI Lesions , 2011, PloS one.

[84]  A. Brickman,et al.  Regional white matter hyperintensity volume, not hippocampal atrophy, predicts incident Alzheimer disease in the community. , 2012, Archives of neurology.

[85]  John Ashburner,et al.  Multivariate decoding of brain images using ordinal regression☆ , 2013, NeuroImage.

[86]  Karl J. Friston,et al.  Investigating individual differences in brain abnormalities in autism. , 2003, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[87]  Giovanni B. Frisoni,et al.  Brain morphometry reproducibility in multi-center 3T MRI studies: A comparison of cross-sectional and longitudinal segmentations , 2013, NeuroImage.

[88]  Janaina Mourão Miranda,et al.  Patient classification as an outlier detection problem: An application of the One-Class Support Vector Machine , 2011, NeuroImage.

[89]  J. Dukart,et al.  Age Correction in Dementia – Matching to a Healthy Brain , 2011, PloS one.

[90]  John G. Csernansky,et al.  Open Access Series of Imaging Studies (OASIS): Cross-sectional MRI Data in Young, Middle Aged, Nondemented, and Demented Older Adults , 2007, Journal of Cognitive Neuroscience.

[91]  Anders M. Dale,et al.  Consistent neuroanatomical age-related volume differences across multiple samples , 2011, Neurobiology of Aging.

[92]  Janaina Mourão Miranda,et al.  Quantitative prediction of subjective pain intensity from whole-brain fMRI data using Gaussian processes , 2010, NeuroImage.

[93]  D. C. Howell,et al.  Comparing an Individual's Test Score Against Norms Derived from Small Samples , 1998 .

[94]  K. Walhovd,et al.  Structural Brain Changes in Aging: Courses, Causes and Cognitive Consequences , 2010, Reviews in the neurosciences.

[95]  Roberto Viviani,et al.  Non-normality and transformations of random fields, with an application to voxel-based morphometry , 2007, NeuroImage.

[96]  M. Jorge Cardoso,et al.  Accurate multimodal probabilistic prediction of conversion to Alzheimer's disease in patients with mild cognitive impairment☆ , 2013, NeuroImage: Clinical.

[97]  Mark W. Woolrich,et al.  Using Gaussian-Process Regression for Meta-Analytic Neuroimaging Inference Based on Sparse Observations , 2011, IEEE Transactions on Medical Imaging.

[98]  Meritxell Bach Cuadra,et al.  Comparison and validation of tissue modelization and statistical classification methods in T1-weighted MR brain images , 2005, IEEE Transactions on Medical Imaging.

[99]  Nick C Fox,et al.  Revising the definition of Alzheimer's disease: a new lexicon , 2010, The Lancet Neurology.

[100]  C. Jack,et al.  Qualitative estimates of medial temporal atrophy as a predictor of progression from mild cognitive impairment to dementia. , 2007, Archives of neurology.