A multilevel features selection framework for skin lesion classification

Melanoma is considered to be one of the deadliest skin cancer types, whose occurring frequency elevated in the last few years; its earlier diagnosis, however, significantly increases the chances of patients’ survival. In the quest for the same, a few computer based methods, capable of diagnosing the skin lesion at initial stages, have been recently proposed. Despite some success, however, margin exists, due to which the machine learning community still considers this an outstanding research challenge. In this work, we come up with a novel framework for skin lesion classification, which integrates deep features information to generate most discriminant feature vector, with an advantage of preserving the original feature space. We utilize recent deep models for feature extraction, and by taking advantage of transfer learning. Initially, the dermoscopic images are segmented, and the lesion region is extracted, which is later subjected to retrain the selected deep models to generate fused feature vectors. In the second phase, a framework for most discriminant feature selection and dimensionality reduction is proposed, entropy-controlled neighborhood component analysis (ECNCA). This hierarchical framework optimizes fused features by selecting the principle components and extricating the redundant and irrelevant data. The effectiveness of our design is validated on four benchmark dermoscopic datasets; PH2, ISIC MSK, ISIC UDA, and ISBI-2017. To authenticate the proposed method, a fair comparison with the existing techniques is also provided. The simulation results clearly show that the proposed design is accurate enough to categorize the skin lesion with 98.8%, 99.2% and 97.1% and 95.9% accuracy with the selected classifiers on all four datasets, and by utilizing less than 3% features.

[1]  Kemal Polat,et al.  OCE-NGC: A neutrosophic graph cut algorithm using optimized clustering estimation algorithm for dermoscopic skin lesion segmentation , 2020, Appl. Soft Comput..

[2]  Forrest N. Iandola,et al.  SqueezeNet: AlexNet-level accuracy with 50x fewer parameters and <1MB model size , 2016, ArXiv.

[3]  Chee Peng Lim,et al.  A weight perturbation-based regularisation technique for convolutional neural networks and the application in medical imaging , 2020, Expert Syst. Appl..

[4]  T Lee,et al.  Dullrazor®: A software approach to hair removal from images , 1997, Comput. Biol. Medicine.

[5]  Omar Farooq,et al.  A hybrid Local Binary Pattern and wavelets based approach for EEG classification for diagnosing epilepsy , 2020, Expert Syst. Appl..

[6]  Syed Rameez Naqvi,et al.  A deep heterogeneous feature fusion approach for automatic land-use classification , 2018, Inf. Sci..

[7]  Tinne Tuytelaars,et al.  Mining Mid-level Features for Image Classification , 2014, International Journal of Computer Vision.

[8]  Muhammad Rashid,et al.  An integrated framework of skin lesion detection and recognition through saliency method and optimal deep neural network features selection , 2019, Neural Computing and Applications.

[9]  Jorge S. Marques,et al.  On the role of shape in the detection of melanomas , 2013, 2013 8th International Symposium on Image and Signal Processing and Analysis (ISPA).

[10]  LinLin Shen,et al.  Skin Lesion Analysis towards Melanoma Detection Using Deep Learning Network , 2017, Sensors.

[11]  Andrew Zisserman,et al.  Very Deep Convolutional Networks for Large-Scale Image Recognition , 2014, ICLR.

[12]  Hilde van der Togt,et al.  Publisher's Note , 2003, J. Netw. Comput. Appl..

[13]  András Hajdu,et al.  Classification Of Skin Lesions Using An Ensemble Of Deep Neural Networks , 2018, 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

[14]  Geoffrey E. Hinton,et al.  ImageNet classification with deep convolutional neural networks , 2012, Commun. ACM.

[15]  D. S. Guru,et al.  Segmentation and Classification of Skin Lesions for Disease Diagnosis , 2016, ArXiv.

[16]  Mohammad Taghi Hajiaghayi,et al.  Approximation Algorithms for Connected Maximum Cut and Related Problems , 2015, ESA.

[17]  Jorge S. Marques,et al.  Two Systems for the Detection of Melanomas in Dermoscopy Images Using Texture and Color Features , 2014, IEEE Systems Journal.

[18]  Amna Waheed,et al.  An efficient machine learning approach for the detection of melanoma using dermoscopic images , 2017, 2017 International Conference on Communication, Computing and Digital Systems (C-CODE).

[19]  Dong-Hyun Kim,et al.  Multiple skin lesions diagnostics via integrated deep convolutional networks for segmentation and classification , 2020, Comput. Methods Programs Biomed..

[20]  Taghi M. Khoshgoftaar,et al.  A survey of transfer learning , 2016, Journal of Big Data.

[21]  Li Bai,et al.  Deep Learning in Visual Computing and Signal Processing , 2017, Appl. Comput. Intell. Soft Comput..

[22]  Mohammad Ali Kadampur,et al.  Skin cancer detection: Applying a deep learning based model driven architecture in the cloud for classifying dermal cell images , 2020, Informatics in Medicine Unlocked.

[23]  Shehzad Khalid,et al.  Segmentation of skin lesion using Cohen–Daubechies–Feauveau biorthogonal wavelet , 2016, SpringerPlus.

[24]  David Dagan Feng,et al.  Step-wise integration of deep class-specific learning for dermoscopic image segmentation , 2019, Pattern Recognit..

[25]  Bappaditya Mandal,et al.  Deep residual network with regularised fisher framework for detection of melanoma , 2018, IET Comput. Vis..

[26]  Nikhil Cheerla,et al.  Automatic Melanoma Detection Using Multi- Stage Neural Networks , 2014 .

[27]  Jorge S. Marques,et al.  On the role of texture and color in the classification of dermoscopy images , 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

[28]  Farhan Riaz,et al.  Description of Visual Content in Dermoscopy Images Using Joint Histogram of Multiresolution Local Binary Patterns and Local Contrast , 2015, IDEAL.

[29]  Musaed Alhussein,et al.  An implementation of normal distribution based segmentation and entropy controlled features selection for skin lesion detection and classification , 2018, BMC Cancer.

[30]  Adel Al-Jumaily,et al.  The Beneficial Techniques in Preprocessing Step of Skin Cancer Detection System Comparing , 2014 .

[31]  Mohammed Hossny,et al.  Digital hair segmentation using hybrid convolutional and recurrent neural networks architecture , 2019, Comput. Methods Programs Biomed..

[32]  Debangshu Dey,et al.  Extraction of features from cross correlation in space and frequency domains for classification of skin lesions , 2019, Biomed. Signal Process. Control..

[33]  Alain Pitiot,et al.  Fusing fine-tuned deep features for skin lesion classification , 2019, Comput. Medical Imaging Graph..

[34]  Dumitru Erhan,et al.  Going deeper with convolutions , 2014, 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[35]  Ihab Zaqout,et al.  Diagnosis of Skin Lesions Based on Dermoscopic Images Using Image Processing Techniques , 2016, Pattern Recognition - Selected Methods and Applications.

[36]  Sergey Ioffe,et al.  Rethinking the Inception Architecture for Computer Vision , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[37]  Praveen Sankaran,et al.  Wavelet Sub Band Entropy Based Feature Extraction Method for BCI , 2015 .

[38]  L. D. Dhinesh Babu,et al.  A hybrid of whale optimization and late acceptance hill climbing based imputation to enhance classification performance in electronic health records , 2019, J. Biomed. Informatics.

[39]  Huseyin Seker,et al.  Transform domain representation-driven convolutional neural networks for skin lesion segmentation , 2020, Expert Syst. Appl..

[40]  W. Jaschke,et al.  Automated melanoma recognition , 2001, IEEE Transactions on Medical Imaging.

[41]  David Dagan Feng,et al.  Automated saliency-based lesion segmentation in dermoscopic images , 2015, 2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

[42]  Fang Liu,et al.  SAR Image segmentation based on convolutional-wavelet neural network and markov random field , 2017, Pattern Recognit..

[43]  M. G. Fleming,et al.  Dermoscopy of pigmented skin lesions: results of a consensus meeting via the Internet. , 2003, Journal of the American Academy of Dermatology.

[44]  Dinggang Shen,et al.  Deep CNN ensembles and suggestive annotations for infant brain MRI segmentation , 2017, Comput. Medical Imaging Graph..

[45]  Muhammad Haroon Yousaf,et al.  Melanoma lesion detection and segmentation using deep region based convolutional neural network and fuzzy C-means clustering , 2019, Int. J. Medical Informatics.

[46]  Pedro M. Ferreira,et al.  PH2 - A dermoscopic image database for research and benchmarking , 2013, 2013 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

[47]  Jian Sun,et al.  Deep Residual Learning for Image Recognition , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[48]  David Dagan Feng,et al.  Automatic melanoma detection via multi-scale lesion-biased representation and joint reverse classification , 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

[49]  Janu R Panicker,et al.  Skin lesion analysis system for melanoma detection with an effective hair segmentation method , 2016, 2016 International Conference on Information Science (ICIS).

[50]  Dagan Feng,et al.  Dermoscopic Image Segmentation via Multistage Fully Convolutional Networks , 2017, IEEE Transactions on Biomedical Engineering.

[51]  Omar Abuzaghleh,et al.  A Portable Real-Time Noninvasice Skin Lesion Analysis System to Assist in Melanoma Early Detection and Prevention , 2016 .

[52]  M. Faezipour,et al.  A comparison of feature sets for an automated skin lesion analysis system for melanoma early detection and prevention , 2015, 2015 Long Island Systems, Applications and Technology.

[53]  Yoshua Bengio,et al.  How transferable are features in deep neural networks? , 2014, NIPS.

[54]  Wei Yang,et al.  Neighborhood Component Feature Selection for High-Dimensional Data , 2012, J. Comput..

[55]  W. Stolz,et al.  The ABCD rule of dermatoscopy. High prospective value in the diagnosis of doubtful melanocytic skin lesions. , 1994, Journal of the American Academy of Dermatology.

[56]  S. Menzies,et al.  Frequency and morphologic characteristics of invasive melanomas lacking specific surface microscopic features. , 1996, Archives of dermatology.

[57]  Xiaogang Wang,et al.  Visual saliency detection using information contents weighting , 2016 .

[58]  Nader Karimi,et al.  Multiple Abnormality Detection for Automatic Medical Image Diagnosis Using Bifurcated Convolutional Neural Network , 2018, Biomed. Signal Process. Control..

[59]  Geoffrey E. Hinton,et al.  Neighbourhood Components Analysis , 2004, NIPS.

[60]  Kilian Q. Weinberger,et al.  Densely Connected Convolutional Networks , 2016, 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[61]  Qaisar Abbas,et al.  A perceptually oriented method for contrast enhancement and segmentation of dermoscopy images , 2013, Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging.

[62]  Tallha Akram,et al.  Skin lesion segmentation and recognition using multichannel saliency estimation and M-SVM on selected serially fused features , 2018, Journal of Ambient Intelligence and Humanized Computing.

[63]  Sergey Ioffe,et al.  Inception-v4, Inception-ResNet and the Impact of Residual Connections on Learning , 2016, AAAI.

[64]  Hanli Wang,et al.  Richer feature for image classification with super and sub kernels based on deep convolutional neural network , 2017, Comput. Electr. Eng..

[65]  Qiang Yang,et al.  A Survey on Transfer Learning , 2010, IEEE Transactions on Knowledge and Data Engineering.

[66]  Mohammad Sohel Rahman,et al.  MultiResUNet : Rethinking the U-Net Architecture for Multimodal Biomedical Image Segmentation , 2019, Neural Networks.

[67]  Muhammad Sharif,et al.  Developed Newton-Raphson based deep features selection framework for skin lesion recognition , 2020, Pattern Recognit. Lett..

[68]  Noel C. F. Codella,et al.  Skin lesion analysis toward melanoma detection: A challenge at the 2017 International symposium on biomedical imaging (ISBI), hosted by the international skin imaging collaboration (ISIC) , 2016, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

[69]  G. Argenziano,et al.  Epiluminescence microscopy for the diagnosis of doubtful melanocytic skin lesions. Comparison of the ABCD rule of dermatoscopy and a new 7-point checklist based on pattern analysis. , 1998, Archives of dermatology.