Cell-Type-Based Analysis of MicroRNA Profiles in the Mouse Brain

[1]  L. Mei,et al.  β-Catenin gain of function in muscles impairs neuromuscular junction formation , 2012, Development.

[2]  L. Mei,et al.  Structural basis of agrin-LRP4-MuSK signaling. , 2012, Genes & development.

[3]  S. Burden,et al.  The extracellular region of Lrp4 is sufficient to mediate neuromuscular synapse formation , 2011, Developmental dynamics : an official publication of the American Association of Anatomists.

[4]  T. Biederer,et al.  Lateral assembly of the immunoglobulin protein SynCAM 1 controls its adhesive function and instructs synapse formation , 2011, The EMBO journal.

[5]  Wei Zhang,et al.  Agrin Binds to the N-terminal Region of Lrp4 Protein and Stimulates Association between Lrp4 and the First Immunoglobulin-like Domain in Muscle-specific Kinase (MuSK)* , 2011, The Journal of Biological Chemistry.

[6]  S. Nelson,et al.  A Resource of Cre Driver Lines for Genetic Targeting of GABAergic Neurons in Cerebral Cortex , 2011, Neuron.

[7]  A. Noël,et al.  Cell cholesterol modulates metalloproteinase‐dependent shedding of low‐density lipoprotein receptor‐related protein‐1 (LRP‐1) and clearance function , 2011, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[8]  S. Kirov,et al.  Specific Regulation of NRG1 Isoform Expression by Neuronal Activity , 2011, The Journal of Neuroscience.

[9]  D. Green,et al.  Ordered progression of stage-specific miRNA profiles in the mouse B2 B-cell lineage. , 2011, Blood.

[10]  G. Schratt.  microRNAs at the synapse , 2011, Nature Reviews Cancer.

[11]  L. Mei,et al.  Neuregulin 1 Promotes Excitatory Synapse Development and Function in GABAergic Interneurons , 2011, The Journal of Neuroscience.

[12]  O. Hobert,et al.  The molecular and gene regulatory signature of a neuron , 2010, Trends in Neurosciences.

[13]  Bin Xu,et al.  MicroRNAs in psychiatric and neurodevelopmental disorders , 2010, Brain Research.

[14]  K. Nishikura.  Functions and regulation of RNA editing by ADAR deaminases. , 2010, Annual review of biochemistry.

[15]  G. Hannon,et al.  A dicer-independent miRNA biogenesis pathway that requires Ago catalysis , 2010, Nature.

[16]  R. Oppenheim,et al.  Acetylcholine negatively regulates development of the neuromuscular junction through distinct cellular mechanisms , 2010, Proceedings of the National Academy of Sciences.

[17]  C. Nusbaum,et al.  Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. , 2010, Genes & development.

[18]  E. Cuppen,et al.  Small RNA expression and strain specificity in the rat , 2010, BMC Genomics.

[19]  A. Bradley,et al.  Ectodomains of the LDL Receptor-Related Proteins LRP1b and LRP4 Have Anchorage Independent Functions In Vivo , 2010, PloS one.

[20]  L. Mei,et al.  To build a synapse: signaling pathways in neuromuscular junction assembly , 2010, Development.

[21]  M. Robinson,et al.  A scaling normalization method for differential expression analysis of RNA-seq data , 2010, Genome Biology.

[22]  A. Munshi,et al.  MicroRNA Signatures in Neurological Disorders , 2010, Canadian Journal of Neurological Sciences / Journal Canadien des Sciences Neurologiques.

[23]  E. Callaway,et al.  Immunochemical characterization of inhibitory mouse cortical neurons: Three chemically distinct classes of inhibitory cells , 2010, The Journal of comparative neurology.

[24]  Allan R. Jones,et al.  A robust and high-throughput Cre reporting and characterization system for the whole mouse brain , 2009, Nature Neuroscience.

[25]  N. Perrimon,et al.  Hierarchical rules for Argonaute loading in Drosophila. , 2009, Molecular cell.

[26]  Davis J. McCarthy,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[27]  M. Kiebler,et al.  Faculty Opinions recommendation of Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. , 2009 .

[28]  P. Khaitovich,et al.  Sequence features associated with microRNA strand selection in humans and flies , 2009, BMC Genomics.

[29]  R. Palmiter,et al.  Cell-type-specific isolation of ribosome-associated mRNA from complex tissues , 2009, Proceedings of the National Academy of Sciences.

[30]  W. Filipowicz,et al.  Dendrites of Mammalian Neurons Contain Specialized P-Body-Like Structures That Respond to Neuronal Activation , 2008, The Journal of Neuroscience.

[31]  Siu-Ming Yiu,et al.  Filtering of false positive microRNA candidates by a clustering-based approach , 2008, BMC Bioinformatics.

[32]  J. Sanes,et al.  Signal Regulatory Proteins (SIRPS) Are Secreted Presynaptic Organizing Molecules* , 2008, Journal of Biological Chemistry.

[33]  P. Greengard,et al.  A Translational Profiling Approach for the Molecular Characterization of CNS Cell Types , 2008, Cell.

[34]  L. Mei,et al.  LRP4 Serves as a Coreceptor of Agrin , 2008, Neuron.

[35]  S. Hubbard,et al.  Lrp4 Is a Receptor for Agrin and Forms a Complex with MuSK , 2008, Cell.

[36]  L. Mei,et al.  HSP90β Regulates Rapsyn Turnover and Subsequent AChR Cluster Formation and Maintenance , 2008, Neuron.

[37]  Dang D. Long,et al.  mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein–enriched transcripts , 2008, Nature Methods.

[38]  Molly Megraw,et al.  Frequency and fate of microRNA editing in human brain , 2008, Nucleic acids research.

[39]  F. Tang,et al.  MicroRNAs are tightly associated with RNA-induced gene silencing complexes in vivo. , 2008, Biochemical and biophysical research communications.

[40]  E. P. Gardner,et al.  Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex , 2008, Nature Reviews Neuroscience.

[41]  Vetle I. Torvik,et al.  Expression of microRNAs and their precursors in synaptic fractions of adult mouse forebrain , 2008, Journal of neurochemistry.

[42]  A. Hamilton,et al.  Improved northern blot method for enhanced detection of small RNA , 2008, Nature Protocols.

[43]  Daniel Herschlag,et al.  Systematic Identification of mRNAs Recruited to Argonaute 2 by Specific microRNAs and Corresponding Changes in Transcript Abundance , 2008, PloS one.

[44]  N. Rajewsky,et al.  Discovering microRNAs from deep sequencing data using miRDeep , 2008, Nature Biotechnology.

[45]  O. Hobert.  Gene Regulation by Transcription Factors and MicroRNAs , 2008, Science.

[46]  A. Silahtaroglu,et al.  MicroRNA expression in the adult mouse central nervous system. , 2008, RNA.

[47]  T. Gao,et al.  Retrograde regulation of motoneuron differentiation by muscle β-catenin , 2008, Nature Neuroscience.

[48]  Quanxin Wang,et al.  Multiple Distinct Subtypes of GABAergic Neurons in Mouse Visual Cortex Identified by Triple Immunostaining , 2007, Frontiers in neuroanatomy.

[49]  Zhenyu Xuan,et al.  A biochemical approach to identifying microRNA targets , 2007, Proceedings of the National Academy of Sciences.

[50]  J. Yates,et al.  Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2. , 2007, Molecular cell.

[51]  Mark D. Robinson,et al.  Moderated statistical tests for assessing differences in tag abundance , 2007, Bioinform..

[52]  S. Endo,et al.  A role for LRP4 in neuronal cell viability is related to apoE-binding , 2007, Brain Research.

[53]  George Easow,et al.  Isolation of microRNA targets by miRNP immunopurification. , 2007, RNA.

[54]  M. Robinson,et al.  Small-sample estimation of negative binomial dispersion, with applications to SAGE data. , 2007, Biostatistics.

[55]  C. Sander,et al.  A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing , 2007, Cell.

[56]  G. Meister,et al.  Identification of Human microRNA Targets From Isolated Argonaute Protein Complexes , 2007, RNA biology.

[57]  A. Hatzigeorgiou,et al.  Redirection of Silencing Targets by Adenosine-to-Inosine Editing of miRNAs , 2007, Science.

[58]  C. Carter,et al.  Convergence of genes implicated in Alzheimer's disease on the cerebral cholesterol shuttle: APP, cholesterol, lipoproteins, and atherosclerosis , 2007, Neurochemistry International.

[59]  Kaleb M. Pauley,et al.  Detection of the argonaute protein Ago2 and microRNAs in the RNA induced silencing complex (RISC) using a monoclonal antibody. , 2006, Journal of immunological methods.

[60]  K. Anderson,et al.  LDL-receptor-related protein 4 is crucial for formation of the neuromuscular junction , 2006, Development.

[61]  Oliver Hobert,et al.  Early Embryonic Programming of Neuronal Left/Right Asymmetry in C. elegans , 2006, Current Biology.

[62]  S. Nelson,et al.  Probing the transcriptome of neuronal cell types , 2006, Current Opinion in Neurobiology.

[63]  Oliver von Ahsen,et al.  Global Transcriptome Analysis of Genetically Identified Neurons in the Adult Cortex , 2006, The Journal of Neuroscience.

[64]  K. Yasuda,et al.  Expression of low density lipoprotein receptor-related protein 4 (Lrp4) gene in the mouse germ cells. , 2006, Gene expression patterns : GEP.

[65]  T. Gao,et al.  Shp2 Is Dispensable in the Formation and Maintenance of the Neuromuscular Junction , 2006, Neurosignals.

[66]  T. Akiyama,et al.  The Muscle Protein Dok-7 Is Essential for Neuromuscular Synaptogenesis , 2006, Science.

[67]  Takashi Yamauchi,et al.  Interaction of LDL receptor‐related protein 4 (LRP4) with postsynaptic scaffold proteins via its C‐terminal PDZ domain‐binding motif, and its regulation by Ca2+/calmodulin‐dependent protein kinase II , 2006, The European journal of neuroscience.

[68]  Anton J. Enright,et al.  RNA editing of human microRNAs , 2006, Genome Biology.

[69]  Mary Kay Lobo,et al.  FACS-array profiling of striatal projection neuron subtypes in juvenile and adult mouse brains , 2006, Nature Neuroscience.

[70]  Hwan‐Ching Tai,et al.  MicroRNA: MicroRNAs Reach out into Dendrites , 2006, Current Biology.

[71]  Michael E. Greenberg,et al.  A brain-specific microRNA regulates dendritic spine development , 2006, Nature.

[72]  S. Burden,et al.  Neuromuscular Synapse Formation in Mice Lacking Motor Neuron- and Skeletal Muscle-Derived Neuregulin-1 , 2006, The Journal of Neuroscience.

[73]  Eric C Lai,et al.  The Drosophila microRNA iab-4 causes a dominant homeotic transformation of halteres to wings. , 2005, Genes & development.

[74]  R. Hammer,et al.  Abnormal development of the apical ectodermal ridge and polysyndactyly in Megf7-deficient mice. , 2005, Human molecular genetics.

[75]  L. Wrabetz,et al.  Loss of Mtmr2 Phosphatase in Schwann Cells But Not in Motor Neurons Causes Charcot-Marie-Tooth Type 4B1 Neuropathy with Myelin Outfoldings , 2005, The Journal of Neuroscience.

[76]  Maryann E Martone,et al.  Dicer and eIF2c are enriched at postsynaptic densities in adult mouse brain and are modified by neuronal activity in a calpain‐dependent manner , 2005, Journal of neurochemistry.

[77]  G. Bezakova,et al.  Synapses Form in Skeletal Muscles Lacking Neuregulin Receptors , 2005, Science.

[78]  Hanah Margalit,et al.  Clustering and conservation patterns of human microRNAs , 2005, Nucleic acids research.

[79]  B. Hyman,et al.  The Low Density Lipoprotein Receptor-related Protein (LRP) Is a Novel β-Secretase (BACE1) Substrate* , 2005, Journal of Biological Chemistry.

[80]  D. Bartel,et al.  Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. , 2005, RNA.

[81]  Paola Arlotta,et al.  Neuronal Subtype-Specific Genes that Control Corticospinal Motor Neuron Development In Vivo , 2005, Neuron.

[82]  Ann Marie Craig,et al.  Neurexins Induce Differentiation of GABA and Glutamate Postsynaptic Specializations via Neuroligins , 2004, Cell.

[83]  Karel Svoboda,et al.  Subcellular domain-restricted GABAergic innervation in primary visual cortex in the absence of sensory and thalamic inputs , 2004, Nature Neuroscience.

[84]  H. Markram,et al.  Interneurons of the neocortical inhibitory system , 2004, Nature Reviews Neuroscience.

[85]  J. Lu,et al.  Static, transient and permanent organization of GABAA receptor expression in calbindin‐positive interneurons in response to amygdala kindled seizures , 2004, Journal of neurochemistry.

[86]  J. M. Thomson,et al.  Argonaute2 Is the Catalytic Engine of Mammalian RNAi , 2004, Science.

[87]  Henry Mirsky,et al.  RNA editing of a miRNA precursor. , 2004, RNA.

[88]  Lin He,et al.  MicroRNAs: small RNAs with a big role in gene regulation , 2004, Nature Reviews Genetics.

[89]  T. Tuschl,et al.  Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs. , 2004, Molecular cell.

[90]  Peter F Stadler,et al.  Molecular evolution of a microRNA cluster. , 2004, Journal of molecular biology.

[91]  Kazunari Taira,et al.  A Small Modulatory dsRNA Specifies the Fate of Adult Neural Stem Cells , 2004, Cell.

[92]  D. Bartel.  MicroRNAs Genomics, Biogenesis, Mechanism, and Function , 2004, Cell.

[93]  M. Werle,et al.  Structural alterations at the neuromuscular junctions of matrix metalloproteinase 3 null mutant mice , 2003, Journal of neurocytology.

[94]  C. Ko,et al.  Glial Cells Maintain Synaptic Structure and Function and Promote Development of the Neuromuscular Junction In Vivo , 2003, Neuron.

[95]  U. Müller,et al.  Beta1 integrins regulate myoblast fusion and sarcomere assembly. , 2003, Developmental cell.

[96]  C. Fuhrer,et al.  Agrin Regulates Rapsyn Interaction with Surface Acetylcholine Receptors, and This Underlies Cytoskeletal Anchoring and Clustering* , 2003, The Journal of Biological Chemistry.

[97]  T. Südhof,et al.  SynCAM, a Synaptic Adhesion Molecule That Drives Synapse Assembly , 2002, Science.

[98]  L. Mei,et al.  Regulation of AChR Clustering by Dishevelled Interacting with MuSK and PAK1 , 2002, Neuron.

[99]  J. Sanes,et al.  Induction, assembly, maturation and maintenance of a postsynaptic apparatus , 2001, Nature reviews. Neuroscience.

[100]  J. Duncan,et al.  An adaptive coding model of neural function in prefrontal cortex , 2001, Nature Reviews Neuroscience.

[101]  A. Caudy,et al.  Argonaute2, a Link Between Genetic and Biochemical Analyses of RNAi , 2001, Science.

[102]  M Yuzaki,et al.  Purification of Purkinje cells by fluorescence‐activated cell sorting from transgenic mice that express green fluorescent protein , 2001, The European journal of neuroscience.

[103]  S. Arber,et al.  Patterning of Muscle Acetylcholine Receptor Gene Expression in the Absence of Motor Innervation , 2001, Neuron.

[104]  J. Sanes,et al.  Distinct roles of nerve and muscle in postsynaptic differentiation of the neuromuscular synapse , 2001, Nature.

[105]  John A. Faulkner,et al.  Assembly of the Dystrophin-Associated Protein Complex Does Not Require the Dystrophin Cooh-Terminal Domain , 2000, The Journal of cell biology.

[106]  Michael J. Werle,et al.  Matrix metalloproteinase-3 removes agrin from synaptic basal lamina. , 2000, Journal of neurobiology.

[107]  R. Fetter,et al.  Neuroligin Expressed in Nonneuronal Cells Triggers Presynaptic Development in Contacting Axons , 2000, Cell.

[108]  J. Melki,et al.  Gene targeting restricted to mouse striated muscle lineage. , 1999, Nucleic acids research.

[109]  S. Arber,et al.  Selective agenesis of the dorsal pancreas in mice lacking homeobox gene Hlxb9 , 1999, Nature Genetics.

[110]  Silvia Arber,et al.  Requirement for the Homeobox Gene Hb9 in the Consolidation of Motor Neuron Identity , 1999, Neuron.

[111]  S. Pfaff,et al.  Active Suppression of Interneuron Programs within Developing Motor Neurons Revealed by Analysis of Homeodomain Factor HB9 , 1999, Neuron.

[112]  D. Botstein,et al.  Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[113]  P. Somogyi,et al.  Salient features of synaptic organisation in the cerebral cortex 1 Published on the World Wide Web on 3 March 1998. 1 , 1998, Brain Research Reviews.

[114]  Z. Hall,et al.  Association of muscle‐specific kinase MuSK with the acetylcholine receptor in mammalian muscle , 1997, The EMBO journal.

[115]  J. Sanes,et al.  Defective Neuromuscular Synaptogenesis in Agrin-Deficient Mutant Mice , 1996, Cell.

[116]  P. Distefano,et al.  Agrin Acts via a MuSK Receptor Complex , 1996, Cell.

[117]  P. Distefano,et al.  The Receptor Tyrosine Kinase MuSK Is Required for Neuromuscular Junction Formation In Vivo , 1996, Cell.

[118]  J. Sanes,et al.  Failure of postsynaptic specialization to develop at neuromuscular junctions of rapsyn-deficient mice , 1995, Nature.

[119]  K. Campbell,et al.  Rapsyn may function as a link between the acetylcholine receptor and the agrin-binding dystrophin-associated glycoprotein complex , 1995, Neuron.

[120]  R. Scheller,et al.  The ability of agrin to cluster AChRs depends on alternative splicing and on cell surface proteoglycans , 1993, Neuron.

[121]  E. Hardeman,et al.  Quantitative analysis of the human alpha-skeletal actin gene in transgenic mice. , 1993, The Journal of biological chemistry.

[122]  A. Brennicke,et al.  RNA‐Editing , 1990 .

[123]  M. Smith,et al.  Identification of agrin, a synaptic organizing protein from Torpedo electric organ , 1987, The Journal of cell biology.

[124]  L. Kedes,et al.  Multiple 5'-flanking regions of the human alpha-skeletal actin gene synergistically modulate muscle-specific expression , 1987, Molecular and cellular biology.

[125]  G. Fishell,et al.  Three groups of interneurons account for nearly 100% of neocortical GABAergic neurons , 2011, Developmental neurobiology.

[126]  S. Burden,et al.  MuSK controls where motor axons grow and form synapses , 2008, Nature Neuroscience.

[127]  S. Nelson,et al.  Molecular taxonomy of major neuronal classes in the adult mouse forebrain , 2006, Nature Neuroscience.

[128]  P. Seeburg,et al.  Modulation of microRNA processing and expression through RNA editing by ADAR deaminases , 2006, Nature Structural &Molecular Biology.

[129]  J. Sanes,et al.  Development of the vertebrate neuromuscular junction. , 1999, Annual review of neuroscience.

[130]  T. Willnow,et al.  The low-density-lipoprotein receptor-related protein (LRP) is processed by furin in vivo and in vitro. , 1996, The Biochemical journal.

[131]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[132]  U. J. McMahan,et al.  The agrin hypothesis. , 1990, Cold Spring Harbor symposia on quantitative biology.

[133]  S S Kelly,et al.  The effect of age on neuromuscular transmission. , 1978, The Journal of physiology.