DIANA-miRPath v3.0: deciphering microRNA function with experimental support
暂无分享,去创建一个
Artemis G. Hatzigeorgiou | Thanasis Vergoulis | Theodore Dalamagas | Dimitra Karagkouni | Maria D. Paraskevopoulou | Ioannis S. Vlachos | Georgios Georgakilas | Konstantinos Zagganas | A. Hatzigeorgiou | Thanasis Vergoulis | Theodore Dalamagas | M. Paraskevopoulou | I. Vlachos | G. Georgakilas | Konstantinos Zagganas | D. Karagkouni
[1] Lin He,et al. mir-17-92, a cluster of miRNAs in the midst of the cancer network. , 2010, The international journal of biochemistry & cell biology.
[2] Timos K. Sellis,et al. mirPub: a database for searching microRNA publications , 2014, Bioinform..
[3] Fabian J Theis,et al. miTALOS: analyzing the tissue-specific regulation of signaling pathways by human and mouse microRNAs. , 2011, RNA.
[4] Brad T. Sherman,et al. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.
[5] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[6] Chris Mungall,et al. AmiGO: online access to ontology and annotation data , 2008, Bioinform..
[7] Ioannis S Vlachos,et al. Online resources for miRNA analysis. , 2013, Clinical biochemistry.
[8] Hsien-Da Huang,et al. miRTar: an integrated system for identifying miRNA-target interactions in human , 2011, BMC Bioinformatics.
[9] X. Wu,et al. CORNA: testing gene lists for regulation by microRNAs , 2009, Bioinform..
[10] C. Bracken,et al. Experimental strategies for microRNA target identification , 2011, Nucleic acids research.
[11] D. Bartel,et al. Weak Seed-Pairing Stability and High Target-Site Abundance Decrease the Proficiency of lsy-6 and Other miRNAs , 2011, Nature Structural &Molecular Biology.
[12] Martin Kuiper,et al. OLSVis: an animated, interactive visual browser for bio-ontologies , 2011, BMC Bioinformatics.
[13] Rachael P. Huntley,et al. QuickGO: a web-based tool for Gene Ontology searching , 2009, Bioinform..
[14] Hui Zhou,et al. starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data , 2013, Nucleic Acids Res..
[15] Athanasios Fevgas,et al. DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions , 2014, Nucleic Acids Res..
[16] M. Peter,et al. Targeting of mRNAs by multiple miRNAs: the next step , 2010, Oncogene.
[17] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[18] Sam Griffiths-Jones,et al. Bias in microRNA functional enrichment analysis , 2015, Bioinform..
[19] Ana Kozomara,et al. miRBase: annotating high confidence microRNAs using deep sequencing data , 2013, Nucleic Acids Res..
[20] Martin Reczko,et al. DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs , 2012, Nucleic Acids Res..
[21] Martin Reczko,et al. DIANA-mirPath: Integrating human and mouse microRNAs in pathways , 2009, Bioinform..
[22] Martin Reczko,et al. DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows , 2013, Nucleic Acids Res..
[23] Douglas A. Hosack,et al. Identifying biological themes within lists of genes with EASE , 2003, Genome Biology.
[24] Elizabeth M. Smigielski,et al. dbSNP: the NCBI database of genetic variation , 2001, Nucleic Acids Res..
[25] Martin Reczko,et al. DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways , 2012, Nucleic Acids Res..
[26] Alessandro Vullo,et al. Ensembl 2015 , 2014, Nucleic Acids Res..
[27] E. Izaurralde,et al. Gene silencing by microRNAs: contributions of translational repression and mRNA decay , 2011, Nature Reviews Genetics.
[28] Deborah A. Siegele,et al. GONUTS: the Gene Ontology Normal Usage Tracking System , 2011, Nucleic Acids Res..
[29] Susumu Goto,et al. Data, information, knowledge and principle: back to metabolism in KEGG , 2013, Nucleic Acids Res..