Artificial intelligence for diagnosis of mild–moderate COVID-19 using haematological markers

Abstract Objective The persistent spread of SARS-CoV-2 makes diagnosis challenging because COVID-19 symptoms are hard to differentiate from those of other respiratory illnesses. The reverse transcription-polymerase chain reaction test is the current golden standard for diagnosing various respiratory diseases, including COVID-19. However, this standard diagnostic method is prone to erroneous and false negative results (10% -15%). Therefore, finding an alternative technique to validate the RT-PCR test is paramount. Artificial intelligence (AI) and machine learning (ML) applications are extensively used in medical research. Hence, this study focused on developing a decision support system using AI to diagnose mild-moderate COVID-19 from other similar diseases using demographic and clinical markers. Severe COVID-19 cases were not considered in this study since fatality rates have dropped considerably after introducing COVID-19 vaccines. Methods A custom stacked ensemble model consisting of various heterogeneous algorithms has been utilized for prediction. Four deep learning algorithms have also been tested and compared, such as one-dimensional convolutional neural networks, long short-term memory networks, deep neural networks and Residual Multi-Layer Perceptron. Five explainers, namely, Shapley Additive Values, Eli5, QLattice, Anchor and Local Interpretable Model-agnostic Explanations, have been utilized to interpret the predictions made by the classifiers. Results After using Pearson’s correlation and particle swarm optimization feature selection, the final stack obtained a maximum accuracy of 89%. The most important markers which were useful in COVID-19 diagnosis are Eosinophil, Albumin, T. Bilirubin, ALP, ALT, AST, HbA1c and TWBC. Conclusion The promising results suggest using this decision support system to diagnose COVID-19 from other similar respiratory illnesses.

[1]  S. Umakanth,et al.  A Decision Support System for Diagnosis of COVID-19 from Non-COVID-19 Influenza-like Illness Using Explainable Artificial Intelligence , 2023, Bioengineering.

[2]  P. Abrol,et al.  Wrapper-based optimized feature selection using nature-inspired algorithms , 2023, Neural Computing and Applications.

[3]  P. Andraweera,et al.  A Systematic Review and Meta-Analysis on the Real-World Effectiveness of COVID-19 Vaccines against Infection, Symptomatic and Severe COVID-19 Disease Caused by the Omicron Variant (B.1.1.529) , 2023, Vaccines.

[4]  C. Lorini,et al.  COVID-19 vaccine literacy: A scoping review , 2023, Human vaccines & immunotherapeutics.

[5]  R. Khan,et al.  Automatic COVID-19 prediction using explainable machine learning techniques , 2023, International Journal of Cognitive Computing in Engineering.

[6]  M. Raturi,et al.  A Cross-Sectional Comparative Characterization of Hematological Changes in Patients with COVID-19 Infection, Non-COVID Influenza-like Illnesses and Healthy Controls , 2022, Viruses.

[7]  P. G. Asteris,et al.  Early prediction of COVID-19 outcome using artificial intelligence techniques and only five laboratory indices , 2022, Clinical Immunology.

[8]  R. Shibasaki,et al.  Adaptations of Explainable Artificial Intelligence (XAI) to Agricultural Data Models with ELI5, PDPbox, and Skater using Diverse Agricultural Worker Data , 2022, European Journal of Artificial Intelligence and Machine Learning.

[9]  Tejal Shah,et al.  Explainable AI (XAI): Core Ideas, Techniques, and Solutions , 2022, ACM Comput. Surv..

[10]  Li Fei-Fei,et al.  Advances, challenges and opportunities in creating data for trustworthy AI , 2022, Nature Machine Intelligence.

[11]  Md. Fazla Elahe,et al.  An Explainable AI Approach for the Rapid Diagnosis of COVID-19 Using Ensemble Learning Algorithms , 2022, Frontiers in Public Health.

[12]  B. Elger,et al.  Explainability as fig leaf? An exploration of experts’ ethical expectations towards machine learning in psychiatry , 2022, AI and Ethics.

[13]  Nishant Singh,et al.  COVID-19 Diagnosis: A Comprehensive Review of the RT-qPCR Method for Detection of SARS-CoV-2 , 2022, Diagnostics.

[14]  Y. Levron,et al.  Explainable Artificial Intelligence (XAI) techniques for energy and power systems: Review, challenges and opportunities , 2022, Energy and AI.

[15]  M. Rostami,et al.  A novel explainable COVID-19 diagnosis method by integration of feature selection with random forest , 2022, Informatics in Medicine Unlocked.

[16]  Andrew Ilyas,et al.  Review of COVID-19 testing and diagnostic methods , 2022, Talanta.

[17]  P. G. Asteris,et al.  Genetic prediction of ICU hospitalization and mortality in COVID‐19 patients using artificial neural networks , 2022, Journal of cellular and molecular medicine.

[18]  S. Umakanth,et al.  Medical diagnosis of COVID-19 using blood tests and machine learning , 2022, Journal of Physics: Conference Series.

[19]  P. G. Asteris,et al.  COVID-19 Patient Detection Based on Fusion of Transfer Learning and Fuzzy Ensemble Models Using CXR Images , 2021, Applied Sciences.

[20]  M. A. Mañanas,et al.  Automatic Classification Between COVID-19 and Non-COVID-19 Pneumonia Using Symptoms, Comorbidities, and Laboratory Findings: The Khorshid COVID Cohort Study , 2021, Frontiers in Medicine.

[21]  Ravid Shwartz-Ziv,et al.  Tabular Data: Deep Learning is Not All You Need , 2021 .

[22]  S. Gangemi,et al.  Basophils and Mast Cells in COVID-19 Pathogenesis , 2021, Cells.

[23]  Yu Xue,et al.  Adaptive crossover operator based multi-objective binary genetic algorithm for feature selection in classification , 2021, Knowl. Based Syst..

[24]  Yaqian Mao,et al.  Predictive value of HbA1c for in-hospital adverse prognosis in COVID-19: A systematic review and meta-analysis , 2021, Primary Care Diabetes.

[25]  Tao Yu,et al.  Eosinophil: A Nonnegligible Predictor in COVID-19 Re-Positive Patients , 2021, Frontiers in Immunology.

[26]  Mohammed A. Awadallah,et al.  An Intensive and Comprehensive Overview of JAYA Algorithm, its Versions and Applications , 2021, Archives of Computational Methods in Engineering.

[27]  R. C. Bortoletto,et al.  Simple hemogram to support the decision-making of COVID-19 diagnosis using clusters analysis with self-organizing maps neural network , 2021, Soft Computing.

[28]  Matthieu Cord,et al.  ResMLP: Feedforward Networks for Image Classification With Data-Efficient Training , 2021, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[29]  Khushnood Abbas,et al.  A survey on deep learning and its applications , 2021, Comput. Sci. Rev..

[30]  P. G. Asteris,et al.  Genetic justification of severe COVID-19 using a rigorous algorithm , 2021, Clinical Immunology.

[31]  Dun-Wei Gong,et al.  Feature selection using bare-bones particle swarm optimization with mutual information , 2021, Pattern Recognit..

[32]  Jimmy D. Chua,et al.  Higher albumin levels on admission predict better prognosis in patients with confirmed COVID-19 , 2021, PloS one.

[33]  Christopher J. Anders,et al.  Explaining Deep Neural Networks and Beyond: A Review of Methods and Applications , 2021, Proceedings of the IEEE.

[34]  Laith Abualigah,et al.  Advances in Sine Cosine Algorithm: A comprehensive survey , 2021, Artif. Intell. Rev..

[35]  Z. Altın,et al.  Diagnostic utility of C-reactive protein to albumin ratio as an early warning sign in hospitalized severe COVID-19 patients , 2020, International Immunopharmacology.

[36]  R. Landewé,et al.  Hemocytometric characteristics of COVID-19 patients with and without cytokine storm syndrome on the sysmex XN-10 hematology analyzer , 2020, Clinical chemistry and laboratory medicine.

[37]  Ray-Jade Chen,et al.  Clinical impact of monocyte distribution width and neutrophil-to-lymphocyte ratio for distinguishing COVID-19 and influenza from other upper respiratory tract infections: A pilot study , 2020, PloS one.

[38]  J. Pell,et al.  Modifiable and non-modifiable risk factors for COVID-19, and comparison to risk factors for influenza and pneumonia: results from a UK Biobank prospective cohort study , 2020, BMJ Open.

[39]  A. Monto,et al.  Influenza and COVID‐19: What does co‐existence mean? , 2020, Influenza and other respiratory viruses.

[40]  Kefeng Li,et al.  An improved multivariate model that distinguishes COVID-19 from seasonal flu and other respiratory diseases , 2020, Aging.

[41]  Amir H. Gandomi,et al.  Analysis and Prediction of COVID-19 Using SIR, SEIQR, and Machine Learning Models: Australia, Italy, and UK Cases , 2020, Inf..

[42]  Guy Van den Broeck,et al.  On the Tractability of SHAP Explanations , 2020, AAAI.

[43]  M. Van Ranst,et al.  The influence of COVID-19 on routine hematological parameters of hospitalized patients , 2020, Acta clinica Belgica.

[44]  A. Zlotnik,et al.  Clinical and Immunological Factors That Distinguish COVID-19 From Pandemic Influenza A(H1N1) , 2020, Frontiers in Immunology.

[45]  Jun Zhang,et al.  Distinguishing between COVID‐19 and influenza during the early stages by measurement of peripheral blood parameters , 2020, Journal of medical virology.

[46]  J. Qu,et al.  Clinical characteristics of COVID-19 and its comparison with influenza pneumonia , 2020, Acta clinica Belgica.

[47]  A. Terrinoni,et al.  The COVID-19 pandemic , 2020, Critical reviews in clinical laboratory sciences.

[48]  Doaa El-Shahat,et al.  A hybrid Harris Hawks optimization algorithm with simulated annealing for feature selection , 2020, Artificial Intelligence Review.

[49]  S. Weinberg,et al.  Risk stratification of hospitalized COVID-19 patients through comparative studies of laboratory results with influenza , 2020, EClinicalMedicine.

[50]  Haruna Chiroma,et al.  Whale optimization algorithm: a systematic review of contemporary applications, modifications and developments , 2020, Neural Computing and Applications.

[51]  Ulrike von Luxburg,et al.  Explaining the Explainer: A First Theoretical Analysis of LIME , 2020, AISTATS.

[52]  Ming Hu,et al.  Evaluating explorative prediction power of machine learning algorithms for materials discovery using k-fold forward cross-validation , 2020, Computational Materials Science.

[53]  Murat Doğan Şahin,et al.  Jamovi: An Easy to Use Statistical Software for the Social Scientists , 2019, International Journal of Assessment Tools in Education.

[54]  Petro Liashchynskyi,et al.  Grid Search, Random Search, Genetic Algorithm: A Big Comparison for NAS , 2019, ArXiv.

[55]  Mohammad Alshinwan,et al.  Salp swarm algorithm: a comprehensive survey , 2019, Neural Computing and Applications.

[56]  Shinichiro Taguchi,et al.  Efficient partition of integer optimization problems with one-hot encoding , 2019, Scientific Reports.

[57]  Yong Yu,et al.  A Review of Recurrent Neural Networks: LSTM Cells and Network Architectures , 2019, Neural Computation.

[58]  Onur Avci,et al.  1D Convolutional Neural Networks and Applications: A Survey , 2019, Mechanical Systems and Signal Processing.

[59]  K. Muneeswaran,et al.  Firefly algorithm based feature selection for network intrusion detection , 2019, Comput. Secur..

[60]  Emrah Hancer,et al.  Differential evolution for feature selection: a fuzzy wrapper–filter approach , 2018, Soft Comput..

[61]  Xin-She Yang,et al.  Binary Bat Algorithm for Feature Selection , 2013 .

[62]  Xin-She Yang,et al.  BCS: A Binary Cuckoo Search algorithm for feature selection , 2013, 2013 IEEE International Symposium on Circuits and Systems (ISCAS2013).

[63]  Hui Han,et al.  Borderline-SMOTE: A New Over-Sampling Method in Imbalanced Data Sets Learning , 2005, ICIC.

[64]  Ayman A. El-Saleh,et al.  Particle Swarm Optimization: A Comprehensive Survey , 2022, IEEE Access.

[65]  S. Umakanth,et al.  COVID-19 Mortality Prediction among Patients using Epidemiological parameters: An Ensemble Machine Learning Approach , 2021, Engineered Science.

[66]  Ravid Shwartz-Ziv Tabular Data: Deep Learning is Not All You Need , 2021 .

[67]  Liborio Cavaleri,et al.  A Novel Heuristic Algorithm for the Modeling and Risk Assessment of the COVID-19 Pandemic Phenomenon , 2020, Computer Modeling in Engineering & Sciences.

[68]  H. Mouchère,et al.  Anchors vs Attention: Comparing XAI on a Real-Life Use Case , 2020, ICPR Workshops.

[69]  Wang Li,et al.  A Stacking-Based Model for Non-Invasive Detection of Coronary Heart Disease , 2020, IEEE Access.

[70]  Seyedali Mirjalili,et al.  A Review of Grey Wolf Optimizer-Based Feature Selection Methods for Classification , 2019, Algorithms for Intelligent Systems.

[71]  S. Velliangiri,et al.  A Review of Dimensionality Reduction Techniques for Efficient Computation , 2019, Procedia Computer Science.

[72]  Xin-She Yang,et al.  Binary Flower Pollination Algorithm and Its Application to Feature Selection , 2015, Recent Advances in Swarm Intelligence and Evolutionary Computation.