Mutational effects on inclusion body formation.

Publisher Summary Inclusion body formation has been studied most extensively in Escherichia coli ( E. coli) and Salmonella typhimurium , but the phenomenon is not isolated to prokaryotes. Inclusion bodies have been detected in eukaryotic cells, for example, in diseased human hepatocytes and inside algal chloroplasts. In bacteria, inclusion bodies have been observed to span the full width of a cell. The recognition of the nature of aggregation upon dilution from denaturant left open the question of the origin of inclusion bodies formed from newly synthesized proteins within cells. Intracellular protein deposits, such as Heinz bodies had been identified as associated with specific amino acid substitutions, but these findings from pathology were not initially recognized as protein misfolding. Investigation of the intracellular folding of the P22 tail spike provided direct evidence, that inclusion bodies were derived from the in vivo association of partially folded intermediates. Studies with interferon and interleukin expressed in E. coli confirmed that single amino acid substitutions could influence misfolding and aggregation pathways. This chapter reviews these efforts to isolate mutations affecting intracellular chain folding and other studies related to them.

[1]  M. Sandkvist,et al.  Suppression of temperature‐sensitive assembly mutants of heat‐labile enterotoxin B subunits , 1993, Molecular microbiology.

[2]  J. King,et al.  Thermolabile folding intermediates: inclusion body precursors and chaperonin substrates , 1996, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[3]  R. Wetzel Mutations and off-pathway aggregation of proteins. , 1994, Trends in biotechnology.

[4]  P. Rogers,et al.  Mechanism of canavanine death in Escherichia coli. I. Effect of canvainine on macromolecular synthesis. , 1968, Journal of molecular biology.

[5]  R. Wetzel For Protein Misassembly, It's the “I” Decade , 1996, Cell.

[6]  D. Selkoe,et al.  Amyloid β-Protein and the Genetics of Alzheimer's Disease* , 1996, The Journal of Biological Chemistry.

[7]  Susan Lindquist,et al.  Protein disaggregation mediated by heat-shock protein Hspl04 , 1994, Nature.

[8]  J. King,et al.  Temperature-sensitive mutations in the phage P22 coat protein which interfere with polypeptide chain folding. , 1993, The Journal of biological chemistry.

[9]  R. Rudolph,et al.  Association of antibody chains at different stages of folding: prolyl isomerization occurs after formation of quaternary structure. , 1995, Journal of molecular biology.

[10]  M. Hurle,et al.  Selective Inhibition of A Fibril Formation , 1996, The Journal of Biological Chemistry.

[11]  J. King,et al.  In vitro folding of phage P22 coat protein with amino acid substitutions that confer in vivo temperature sensitivity. , 1995, Biochemistry.

[12]  Myeong-Hee Yu,et al.  A Thermostable Mutation Located at the Hydrophobic Core of α1-Antitrypsin Suppresses the Folding Defect of the Z-type Variant (*) , 1995, The Journal of Biological Chemistry.

[13]  R. Jaenicke,et al.  Folding and association of proteins. , 1982, Biophysics of structure and mechanism.

[14]  T. Baldwin,et al.  Polypeptide folding and dimerization in bacterial luciferase occur by a concerted mechanism in vivo. , 1987, Biochemistry.

[15]  R. Misra OmpF assembly mutants of Escherichia coli K-12: isolation, characterization, and suppressor analysis , 1993, Journal of bacteriology.

[16]  W. Halliday,et al.  In situ characterization of beta-amyloid in Alzheimer's diseased tissue by synchrotron Fourier transform infrared microspectroscopy. , 1996, Biophysical journal.

[17]  R. Wetzel,et al.  Physical, morphological and functional differences between ph 5.8 and 7.4 aggregates of the Alzheimer's amyloid peptide Abeta. , 1996, Journal of molecular biology.

[18]  J. King,et al.  Formation of aggregates from a thermolabile in vivo folding intermediate in P22 tailspike maturation. A model for inclusion body formation. , 1988, The Journal of biological chemistry.

[19]  B. Fane,et al.  Intragenic suppressors of folding defects in the P22 tailspike protein. , 1991, Genetics.

[20]  M. Desmadril,et al.  Occurrence of Transient Multimeric Species during the Refolding of a Monomeric Protein (*) , 1996, The Journal of Biological Chemistry.

[21]  R. Wetzel,et al.  Specificity of abnormal assembly in immunoglobulin light chain deposition disease and amyloidosis. , 1996, Journal of molecular biology.

[22]  R. Carrell,et al.  Thromboembolic disease due to thermolabile conformational changes of antithrombin Rouen-VI (187 Asn-->Asp) , 1994, The Journal of clinical investigation.

[23]  R. Wetzel,et al.  Inclusion body formation and protein stability in sequence variants of interleukin-1 beta. , 1993, The Journal of biological chemistry.

[24]  E. W. Kauffman,et al.  Characterization of an associated equilibrium folding intermediate of bovine growth hormone. , 1986, Biochemistry.

[25]  A. Clarke,et al.  Chaperonins can catalyse the reversal of early aggregation steps when a protein misfolds. , 1995, Journal of molecular biology.

[26]  Daniel I. C. Wang,et al.  Specific aggregation of partially folded polypeptide chains: The molecular basis of inclusion body composition , 1996, Nature Biotechnology.

[27]  G Taubes,et al.  Protein Chemistry: Misfolding the Way to Disease , 1996, Science.

[28]  M L Shuler,et al.  Localization of inclusion bodies in Escherichia coli overproducing beta-lactamase or alkaline phosphatase , 1986, Applied and environmental microbiology.

[29]  A. Mirsky,et al.  The Reversibility of Protein Coagulation , 1930 .

[30]  J. King,et al.  Secondary structure and thermostability of the phage P22 tailspike. XX. Analysis by Raman spectroscopy of the wild-type protein and a temperature-sensitive folding mutant. , 1988, Journal of molecular biology.

[31]  R. Wetzel,et al.  Inclusion body formation by interleukin‐1β depends on the thermal sensitivity of a folding intermediate , 1994, FEBS letters.

[32]  D. Lomas,et al.  The mechanism of Z α1-antitrypsin accumulation in the liver , 1993, Nature.

[33]  J. King,et al.  Genetic properties of temperature-sensitive folding mutants of the coat protein of phage P22. , 1994, Genetics.

[34]  J. Reed,et al.  Aggregation and secondary structure of synthetic amyloid βA4 peptides of Alzheimer's disease , 1991 .

[35]  Yechezkel Kashi,et al.  GroEL-mediated protein folding proceeds by multiple rounds of binding and release of nonnative forms , 1994, Cell.

[36]  S. Gaudriault,et al.  Chloroplasts Can Accommodate Inclusion Bodies , 1995, The Journal of Biological Chemistry.

[37]  C. C. Tomich,et al.  Site-directed mutagenesis to probe protein folding: evidence that the formation and aggregation of a bovine growth hormone folding intermediate are dissociable processes. , 1991, Biochemistry.

[38]  A. Fink,et al.  Nativelike secondary structure in interleukin-1 beta inclusion bodies by attenuated total reflectance FTIR. , 1994, Biochemistry.

[39]  C. Ho,et al.  Inactive and temperature-sensitive folding mutants generated by tryptophan substitutions in the membrane-bound d-lactate dehydrogenase of Escherichia coli. , 1991, Biochemistry.

[40]  S. Steinbacher,et al.  Crystal structure of P22 tailspike protein: interdigitated subunits in a thermostable trimer. , 1994, Science.

[41]  E. Pichersky,et al.  Cold-sensitive assembly of a mutant manganese-stabilizing protein caused by a Val to Ala replacement. , 1996, Biochemistry.

[42]  J. King,et al.  Prevalence of temperature sensitive folding mutations in the parallel beta coil domain of the phage P22 tailspike endorhamnosidase. , 1997, Journal of molecular biology.

[43]  A. Goldberg,et al.  Degradation of abnormal proteins in Escherichia coli. Formation of protein inclusions in cells exposed to amino acid analogs. , 1975, The Journal of biological chemistry.

[44]  M. Goldberg,et al.  Renaturation of Escherichia coli tryptophanase after exposure to 8 M urea. Evidence for the existence of nucleation centers. , 1974, European journal of biochemistry.

[45]  J. King,et al.  Amino acid substitutions influencing intracellular protein folding pathways , 1992, FEBS letters.

[46]  D. Brems Solubility of different folding conformers of bovine growth hormone , 1988 .

[47]  Matthew P. Anderson,et al.  Processing of mutant cystic fibrosis transmembrane conductance regulator is temperature-sensitive , 1992, Nature.

[48]  P. Thomas,et al.  Alteration of the Cystic Fibrosis Transmembrane Conductance Regulator Folding Pathway , 1996, The Journal of Biological Chemistry.