Maximum entropy approach to the determination of solution conformation of flexible polypeptides by global conformational analysis and NMR spectroscopy – Application to DNS1-c-[d-A2bu2, Trp4,Leu5]- enkephalin and DNS1-c-[d-A2bu2, Trp4, d-Leu5]enkephalin
暂无分享,去创建一个
A. Liwo | A. Liwo | C. Czaplewski | M. Groth | S. Ołdziej | W. Wiczk | J. Malicka | M. Groth | J. Malicka | C. Czaplewski | S. Ołdziej | L. Łankiewicz | W. Wiczk | L. Łankiewicz
[1] D. Gorenstein,et al. On the evaluation of interproton distances for three-dimensional structure determination by NMR using a relaxation rate matrix analysis , 1990 .
[2] R. Lieu,et al. A MAXIMUM ENTROPY METHOD WHEN PRIOR INFORMATION CONSISTS OF INEXACT CONSTRAINTS , 1994 .
[3] Hagai Meirovitch,et al. DETERMINATION OF THE STABLE MICROSTATES OF A PEPTIDE FROM NOE DISTANCE CONSTRAINTS AND OPTIMIZATION OF ATOMIC SOLVATION PARAMETERS , 1998 .
[4] K. Wüthrich. NMR of proteins and nucleic acids , 1988 .
[6] J. Stewart. Optimization of parameters for semiempirical methods I. Method , 1989 .
[7] W. F. Gunsteren,et al. Time-dependent distance restraints in molecular dynamics simulations , 1989 .
[8] K. Neubert,et al. Cyclization studies with tetra- and pentapeptide sequences corresponding to beta-casomorphins. , 2009, International journal of peptide and protein research.
[9] G. Chipens,et al. Determination of cyclopeptide conformations in solution using NMR data and conformational energy calculations. , 1988, Biophysical chemistry.
[10] H. Scheraga,et al. On the multiple‐minima problem in the conformational analysis of polypeptides. II. An electrostatically driven Monte Carlo method—tests on poly(L‐alanine) , 1988, Biopolymers.
[11] Richard G. Lyon,et al. A Maximum Entropy Method with a Priori Maximum Likelihood Constraints , 1997 .
[12] R. Bhaskaran,et al. Conformational properties of oxytocin in dimethyl sulfoxide solution: NMR and restrained molecular dynamics studies , 1992, Biopolymers.
[13] T. Yamazaki,et al. Conformational studies of stereoisomeric 14‐membered cyclic enkephalin analogues containing 1‐naphthyialanine at the fourth position: Chirality effect of leucine at the fifth position on biological activity and receptor selectivity , 1991, Biopolymers.
[14] Professor Dr. Miklos Bodanszky,et al. The Practice of Peptide Synthesis , 1994, Springer Lab Manual.
[16] V. Hruby,et al. Conformations of the dermenkephalin backbone in DMSO solution by a new approach to the solution conformations of flexible peptides , 1993 .
[17] M. Billeter,et al. Calibration of the angular dependence of the amide proton-Cα proton coupling constants, 3JHNα, in a globular protein: Use of 3JHNα for identification of helical secondary structure , 1984 .
[18] P. Schiller,et al. Conformational studies of diastereomeric cyclic enkephalins by 1H‐NMR and computer simulations , 1987, Biopolymers.
[19] Olga Kennard,et al. Systematic analysis of structural data as a research technique in organic chemistry , 1983 .
[20] P. Schiller,et al. Enkephalin analogues containing β‐naphthylalanine at the fourth position , 1990 .
[21] E. Meirovitch,et al. New theoretical methodology for elucidating the solution structure of peptides from NMR data. II. Free energy of dominant microstates of Leu-enkephalin and population-weighted average nuclear Overhauser effects intensities. , 1996, Biopolymers.
[22] H. Scheraga,et al. Chain reversals in proteins. , 1973, Biochimica et biophysica acta.
[23] E. Meirovitch,et al. New theoretical methodology for elucidating the solution structure of peptides from NMR data. 1. The relative contribution of low-energy microstates to the partition function , 1995 .
[24] H. Scheraga,et al. Empirical solvation models can be used to differentiate native from near‐native conformations of bovine pancreatic trypsin inhibitor , 1991, Proteins.
[25] G. Fields,et al. Solid phase peptide synthesis utilizing 9-fluorenylmethoxycarbonyl amino acids. , 2009, International journal of peptide and protein research.
[26] A. Liwo,et al. Conformational analysis of [Cpp1, Sar7, Arg8] vasopressin by 1H-NMR spectroscopy and molecular mechanics calculations. , 2009, International journal of peptide and protein research.
[27] W. V. van Gunsteren,et al. Time-averaged nuclear Overhauser effect distance restraints applied to tendamistat. , 1990, Journal of molecular biology.
[28] D. Ripoll,et al. On the multiple‐minima problem in the conformational analysis of polypeptides. IV. Application of the electrostatically driven monte carlo method to the 20‐residue membrane‐bound portion of melittin , 1990, Biopolymers.
[29] Arnold Weissberger,et al. Organic solvents;: Physical properties and methods of purification , 1970 .
[30] P E Wright,et al. Distributed torsion angle grid search in high dimensions: A systematic approach to NMR structure determination , 1998, Journal of biomolecular NMR.
[31] T. Creighton,et al. Local structure due to an aromatic-amide interaction observed by 1H-nuclear magnetic resonance spectroscopy in peptides related to the N terminus of bovine pancreatic trypsin inhibitor. , 1993, Journal of molecular biology.
[32] Wilfred F. van Gunsteren,et al. A Force Field for Liquid Dimethyl Sulfoxide and Physical Properties of Liquid Dimethyl Sulfoxide Calculated Using Molecular Dynamics Simulation , 1995 .
[33] H A Scheraga,et al. New developments of the electrostatically driven Monte Carlo method: test on the membrane-bound portion of melittin. , 1998, Biopolymers.
[34] M. Billeter,et al. MOLMOL: a program for display and analysis of macromolecular structures. , 1996, Journal of molecular graphics.
[35] P. Kollman,et al. A well-behaved electrostatic potential-based method using charge restraints for deriving atomic char , 1993 .
[36] H. Scheraga,et al. Energy parameters in polypeptides. 10. Improved geometrical parameters and nonbonded interactions for use in the ECEPP/3 algorithm, with application to proline-containing peptides , 1994 .
[37] J. Brochon,et al. Analyzing the distribution of decay constants in pulse-fluorimetry using the maximum entropy method. , 1987, Biophysical journal.
[38] V J Hruby,et al. Exploration of the conformational space of oxytocin and arginine-vasopressin using the electrostatically driven Monte Carlo and molecular dynamics methods. , 1998, Biopolymers.
[39] R Brüschweiler,et al. Conformational backbone dynamics of the cyclic decapeptide antamanide. Application of a new multiconformational search algorithm based on NMR data. , 1993, Biochemistry.
[40] Mark S. Gordon,et al. General atomic and molecular electronic structure system , 1993, J. Comput. Chem..
[41] D. Ruppert,et al. Transformation and Weighting in Regression , 1988 .