The Escherichia coli CpxA-CpxR Envelope Stress Response System Regulates Expression of the Porins OmpF and OmpC

ABSTRACT We performed transposon mutagenesis of a two-color fluorescent reporter strain to identify new regulators of the porin genes ompF and ompC in Escherichia coli. Screening of colonies by fluorescence microscopy revealed numerous mutants that exhibited interesting patterns of porin expression. One mutant harbored an insertion in the gene encoding the histidine kinase CpxA, the sensor for a two-component signaling system that responds to envelope stress. The cpxA mutant exhibited increased transcription of ompC and a very strong decrease in transcription of ompF under conditions in which acetyl phosphate levels were high. Subsequent genetic analysis revealed that this phenotype is dependent on phosphorylation of the response regulator CpxR and that activation of CpxA in wild-type cells results in similar regulation of porin expression. Using DNase I footprinting, we demonstrated that CpxR binds upstream of both the ompF and ompC promoters. It thus appears that two distinct two-component systems, CpxA-CpxR and EnvZ-OmpR, converge at the porin promoters. Within the context of envelope stress, outer membrane beta-barrel proteins have generally been associated with the sigma E pathway. However, at least for the classical porins OmpF and OmpC, our results show that the Cpx envelope stress response system plays a role in regulating their expression.

[1]  T. Silhavy,et al.  Cpx signaling pathway monitors biogenesis and affects assembly and expression of P pili , 2001, The EMBO journal.

[2]  T. Silhavy,et al.  P Pilus Assembly Motif Necessary for Activation of the CpxRA Pathway by PapE in Escherichia coli , 2004, Journal of bacteriology.

[3]  D. Low,et al.  Regulation of the pap epigenetic switch by CpxAR: phosphorylated CpxR inhibits transition to the phase ON state by competition with Lrp. , 2004, Molecular cell.

[4]  C. Gross,et al.  Regulation of the Escherichia coliσE‐dependent envelope stress response , 2004, Molecular microbiology.

[5]  T. Raivio,et al.  The Cpx Envelope Stress Response Affects Expression of the Type IV Bundle-Forming Pili of Enteropathogenic Escherichiacoli , 2005, Journal of bacteriology.

[6]  M. Igo,et al.  A distant upstream site involved in the negative regulation of the Escherichia coli ompF gene , 1994, Journal of bacteriology.

[7]  J. Lazzaroni,et al.  CpxR/OmpR Interplay Regulates Curli Gene Expression in Response to Osmolarity in Escherichia coli , 2005, Journal of bacteriology.

[8]  S. Ades Control of the alternative sigma factor sigmaE in Escherichia coli. , 2004, Current opinion in microbiology.

[9]  T. Silhavy,et al.  Periplasmic stress and ECF sigma factors. , 2001, Annual review of microbiology.

[10]  T. Mizuno,et al.  Interaction of OmpR, a positive regulator, with the osmoregulated ompC and ompF genes of Escherichia coli. Studies with wild-type and mutant OmpR proteins. , 1988, The Journal of biological chemistry.

[11]  A. McGuire,et al.  Genome-wide Profiling of Promoter Recognition by the Two-component Response Regulator CpxR-P in Escherichia coli * , 2002, The Journal of Biological Chemistry.

[12]  M. Inouye,et al.  Environmentally regulated gene expression for membrane proteins in Escherichia coli. , 1988, Annual review of cell biology.

[13]  A. Guss,et al.  Genetic analysis of pigment biosynthesis in Xanthobacter autotrophicus Py2 using a new, highly efficient transposon mutagenesis system that is functional in a wide variety of bacteria , 2002, Archives of Microbiology.

[14]  Hirotada Mori,et al.  Identification and Molecular Characterization of the Mg2+ Stimulon of Escherichia coli , 2003, Journal of bacteriology.

[15]  M. Inouye,et al.  In vivo phosphorylation of OmpR, the transcription activator of the ompF and ompC genes in Escherichia coli , 1990, Journal of bacteriology.

[16]  W. B. Snyder,et al.  The Cpx two-component signal transduction pathway of Escherichia coli regulates transcription of the gene specifying the stress-inducible periplasmic protease, DegP. , 1995, Genes & development.

[17]  C. Prigent-Combaret,et al.  Involvement of the Cpx signal transduction pathway of E. coli in biofilm formation. , 1999, FEMS microbiology letters.

[18]  T. Ferenci,et al.  An analysis of multifactorial influences on the transcriptional control of ompF and ompC porin expression under nutrient limitation. , 2001, Microbiology.

[19]  T. Silhavy,et al.  Transduction of envelope stress in Escherichia coli by the Cpx two-component system , 1997, Journal of bacteriology.

[20]  Mark Goulian,et al.  Continuous Control in Bacterial Regulatory Circuits , 2004, Journal of bacteriology.

[21]  F. Neidhardt,et al.  Escherichia Coli and Salmonella: Typhimurium Cellular and Molecular Biology , 1987 .

[22]  B. Wanner,et al.  Involvement of phosphotransacetylase, acetate kinase, and acetyl phosphate synthesis in control of the phosphate regulon in Escherichia coli , 1992, Journal of bacteriology.

[23]  T. Silhavy,et al.  Quality control in the bacterial periplasm. , 2004, Biochimica et biophysica acta.

[24]  T. Silhavy,et al.  Function of conserved histidine-243 in phosphatase activity of EnvZ, the sensor for porin osmoregulation in Escherichia coli , 1997, Journal of bacteriology.

[25]  K. Otto,et al.  Surface sensing and adhesion of Escherichia coli controlled by the Cpx-signaling pathway , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[26]  L. Sambucetti,et al.  Synthesis of outer membrane proteins in cpxA cpxB mutants of Escherichia coli K-12 , 1983, Journal of bacteriology.

[27]  A. Wolfe The Acetate Switch , 2005, Microbiology and Molecular Biology Reviews.

[28]  Wei Liu,et al.  Pho signal transduction network reveals direct transcriptional regulation of one two‐component system by another two‐component regulator: Bacillus subtilis PhoP directly regulates production of ResD , 1998, Molecular microbiology.

[29]  T. Silhavy,et al.  Signal Detection and Target Gene Induction by the CpxRA Two-Component System , 2003, Journal of bacteriology.

[30]  N. Delihas,et al.  MicF: an antisense RNA gene involved in response of Escherichia coli to global stress factors. , 2001, Journal of molecular biology.

[31]  T. Silhavy,et al.  CpxP, a Stress-Combative Member of the Cpx Regulon , 1998, Journal of bacteriology.

[32]  M. Freundlich,et al.  In vitro interactions of integration host factor with the ompF promoter-regulatory region of Escherichia coli , 2004, Molecular and General Genetics MGG.

[33]  M. Igo,et al.  Identification of the bases in the ompF regulatory region, which interact with the transcription factor OmpR. , 1996, Journal of molecular biology.

[34]  L. Kenney,et al.  Relative binding affinities of OmpR and OmpR-phosphate at the ompF and ompC regulatory sites. , 1998, Journal of molecular biology.

[35]  L. Pratt,et al.  From acids to osmZ: multiple factors influence synthesis of the OmpF and OmpC porins in Escherichia coli , 1996, Molecular microbiology.

[36]  T. Silhavy,et al.  Accumulation of the Enterobacterial Common Antigen Lipid II Biosynthetic Intermediate StimulatesdegP Transcription in Escherichia coli , 1998, Journal of bacteriology.

[37]  L. Kenney,et al.  A phosphorylation site mutant of OmpR reveals different binding conformations at ompF and ompC. , 2002, Journal of molecular biology.

[38]  T. Silhavy,et al.  EnvZ controls the concentration of phosphorylated OmpR to mediate osmoregulation of the porin genes. , 1991, Journal of molecular biology.

[39]  S. Miller,et al.  PhoP-PhoQ activates transcription of pmrAB, encoding a two-component regulatory system involved in Salmonella typhimurium antimicrobial peptide resistance , 1996, Journal of bacteriology.

[40]  S. Falkow,et al.  Construction and characterization of new cloning vehicles. II. A multipurpose cloning system. , 1977, Gene.

[41]  T. Silhavy,et al.  Genetic analysis of the switch that controls porin gene expression in Escherichia coli K-12. , 1989, Journal of molecular biology.

[42]  C. Prigent-Combaret,et al.  Complex Regulatory Network Controls Initial Adhesion and Biofilm Formation in Escherichia coli via Regulation of thecsgD Gene , 2001, Journal of bacteriology.

[43]  M. Freundlich,et al.  Integration host factor is a negative effector of in vivo and in vitro expression of ompC in Escherichia coli , 1990, Journal of bacteriology.

[44]  E. Amann,et al.  Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli. , 1988, Gene.

[45]  A. S. Lynch,et al.  Regulation of Gene Expression in Escherichia coli , 1996, Springer US.

[46]  L. Pratt,et al.  The response regulator SprE controls the stability of RpoS. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[47]  F. Bolivar Construction and characterization of new cloning vehicles. III. Derivatives of plasmid pBR322 carrying unique Eco RI sites for selection of Eco RI generated recombinant DNA molecules. , 1978, Gene.

[48]  M. Casadaban,et al.  Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu. , 1976, Journal of molecular biology.

[49]  M. Inouye,et al.  Identification of the DNA-binding domain of the OmpR protein required for transcriptional activation of the ompF and ompC genes of Escherichia coli by in vivo DNA footprinting. , 1989, The Journal of biological chemistry.

[50]  R. Blumenthal,et al.  The leucine-responsive regulatory protein of Escherichia coli negatively regulates transcription of ompC and micF and positively regulates translation of ompF , 1995, Journal of bacteriology.

[51]  T. Mizuno,et al.  Influence of molecular size and osmolarity of sugars and dextrans on the synthesis of outer membrane proteins O-8 and O-9 of Escherichia coli K-12 , 1979, Journal of bacteriology.

[52]  T. Donohue,et al.  The activity of sigma E, an Escherichia coli heat-inducible sigma-factor, is modulated by expression of outer membrane proteins. , 1993, Genes & development.

[53]  Y. Eguchi,et al.  A novel mechanism for connecting bacterial two-component signal-transduction systems. , 2005, Trends in biochemical sciences.

[54]  M. Goulian,et al.  Robustness and the cycle of phosphorylation and dephosphorylation in a two-component regulatory system , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[55]  Haruo Watanabe,et al.  Identification of cpxR as a Positive Regulator Essential for Expression of the Shigella sonnei virF Gene , 1998, Journal of bacteriology.

[56]  T. Silhavy,et al.  Absence of the Outer Membrane Phospholipase A Suppresses the Temperature-Sensitive Phenotype of Escherichia coli degPMutants and Induces the Cpx and ςE Extracytoplasmic Stress Responses , 2001, Journal of bacteriology.

[57]  L. Kenney Structure/function relationships in OmpR and other winged-helix transcription factors. , 2002, Current opinion in microbiology.

[58]  Sarah E. Ades,et al.  Control of the alternative sigma factor σE in Escherichia coli , 2004 .

[59]  G. Storz,et al.  MicC, a Second Small-RNA Regulator of Omp Protein Expression in Escherichia coli , 2004, Journal of bacteriology.

[60]  T. Mizuno,et al.  Evidence for multiple OmpR-binding sites in the upstream activation sequence of the ompC promoter in Escherichia coli: a single OmpR-binding site is capable of activating the promoter , 1990, Journal of bacteriology.

[61]  J. Stock,et al.  Acetyl phosphate and the activation of two-component response regulators. , 1994, The Journal of biological chemistry.

[62]  E. Groisman,et al.  Two-component regulatory systems can interact to process multiple environmental signals , 1996, Journal of bacteriology.

[63]  Jeffrey H. Miller A Short Course in Bacterial Genetics: A Laboratory Manual and Handbook for Escherichia coli and Rela , 1992 .

[64]  E. Groisman,et al.  Control of the Salmonella ugd gene by three two‐component regulatory systems , 2003, Molecular microbiology.

[65]  T. Silhavy,et al.  The Porin Regulon: A Paradigm for the Two-Component Regulatory Systems , 1996 .

[66]  B. Wanner,et al.  One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[67]  W. B. Snyder,et al.  Overproduction of NlpE, a new outer membrane lipoprotein, suppresses the toxicity of periplasmic LacZ by activation of the Cpx signal transduction pathway , 1995, Journal of bacteriology.

[68]  M. Inouye,et al.  Signal transduction via the histidyl‐aspartyl phosphorelay , 1997, Genes to cells : devoted to molecular & cellular mechanisms.

[69]  M. Igo,et al.  Differential Expression of the OmpF and OmpC Porin Proteins in Escherichia coli K-12 Depends upon the Level of Active OmpR , 1998, Journal of bacteriology.