Three closely related 4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridines: synthesis, molecular conformations and hydrogen bonding in zero, one and two dimensions.

In each of 1-(4-fluorophenyl)-5-methylsulfonyl-3-[4-(trifluoromethyl)phenyl]-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridine, C21H19F4N3O2S, (I), 1-(4-chlorophenyl)-5-methylsulfonyl-3-[4-(trifluoromethyl)phenyl]-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridine, C21H19ClF3N3O2S, (II), and 1-(3-methylphenyl)-5-methylsulfonyl-3-[4-(trifluoromethyl)phenyl]-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridine, C22H22F3N3O2S, (III), the reduced pyridine ring adopts a half-chair conformation with the methylsulfonyl substituent occupying an equatorial site. Although compounds (I) and (II) are not isostructural, having the space groups Pbca and P212121, respectively, their molecular conformations are very similar, but the conformation of compound (III) differs from those of (I) and (II) in the relative orientation of the N-benzyl and methylsulfonyl substituents. In compounds (II) and (III), but not in (I), the trifluoromethyl groups are disordered over two sets of atomic sites. Molecules of (I) are linked into centrosymmetric dimers by C-H...π(arene) hydrogen bonds, molecules of (II) are linked by two C-H...O hydrogen bonds to form ribbons of R33(18) rings, which are themselves further linked by a C-Cl...π(arene) interaction, and a combination of C-H...O and C-H...π(arene) hydrogen bonds links the molecules of (III) into sheets. Comparisons are made with the structures of some related compounds.

[1]  G. Sheldrick Crystal structure refinement with SHELXL , 2015, Acta crystallographica. Section C, Structural chemistry.

[2]  P. Yogeeswari,et al.  Discovery of novel tetrahydro-pyrazolo [4,3-c] pyridines for the treatment of neuropathic pain: synthesis and neuropharmacology. , 2013, European journal of medicinal chemistry.

[3]  S. Parsons,et al.  Use of intensity quotients and differences in absolute structure refinement , 2013, Acta crystallographica Section B, Structural science, crystal engineering and materials.

[4]  J. Kehler,et al.  Synthesis and biological evaluation of 4-(aminomethyl)-1-hydroxypyrazole analogues of muscimol as γ-aminobutyric acid(a) receptor agonists. , 2013, Journal of medicinal chemistry.

[5]  Huanmei Guo 5-tert-Butyl 3-ethyl 1-isopropyl-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridine-3,5-dicarboxylate , 2011, Acta Crystallographica Section E.

[6]  H. Sham,et al.  Discovery of a novel sulfonamide-pyrazolopiperidine series as potent and efficacious gamma-secretase inhibitors. , 2010, Bioorganic & medicinal chemistry letters.

[7]  H. Fun,et al.  Tert-butyl 3-oxo-2,3,4,5,6,7-hexahydro-1H-pyrazolo[4,3-c]pyridine-5-carboxylate , 2009, Acta crystallographica. Section E, Structure reports online.

[8]  Anthony L. Spek,et al.  Structure validation in chemical crystallography , 2009, Acta crystallographica. Section D, Biological crystallography.

[9]  K. Kitaura,et al.  Cl–π interactions in protein–ligand complexes , 2008, Protein science : a publication of the Protein Society.

[10]  Rob W. W. Hooft,et al.  Determination of absolute structure using Bayesian statistics on Bijvoet differences , 2008, Journal of applied crystallography.

[11]  I. Collins,et al.  Divergent cyclisations of 2-(5-amino-4-carbamoyl-1H-pyrazol-3-yl) acetic acids with formyl and acetyl electrophiles , 2007 .

[12]  S. C. Woodcock,et al.  New access to the 1H-pyrazolo[4,3-c]pyridine core from bis-acetylenic-N-benzoylhydrazones , 2004 .

[13]  Raymond E. Davis,et al.  Patterns in Hydrogen Bonding: Functionality and Graph Set Analysis in Crystals , 1995 .

[14]  Jan C. A. Boeyens,et al.  Conformational analysis of ring pucker , 1989 .

[15]  D. Barone,et al.  Synthesis, in vitro [3H]prazosin displacement, and in vivo activity of 3-aryl-4,5,6,7-tetrahydropyrazolo[4,3-c]pyridines, a new class of antihypertensive agents. , 1985, Journal of medicinal chemistry.

[16]  H. Flack,et al.  On enantiomorph‐polarity estimation , 1983 .

[17]  D. Cremer,et al.  General definition of ring puckering coordinates , 1975 .

[18]  G. Sheldrick A short history of SHELX. , 2008, Acta crystallographica. Section A, Foundations of crystallography.

[19]  F. Riddell,et al.  Further studies of intramolecular motions in crystalline ammonium bromidesby CP/MAS NMR , 1997 .

[20]  F. Riddell,et al.  Intramolecular motions in a series of crystalline benzylammonium bromides and dibenzylamines studied by CP/MAS NMR , 1996 .