Individualized ROI Optimization via Maximization of Group-wise Consistency of Structural and Functional Profiles

Functional segregation and integration are fundamental characteristics of the human brain. Studying the connectivity among segregated regions and the dynamics of integrated brain networks has drawn increasing interest . A very controversial, yet fundamental issue in these studies is how to determine the best functional brain regions or ROIs (regions of interests) for individuals. Essentially, the computed connectivity patterns and dynamics of brain networks are very sensitive to the locations, sizes, and shapes of the ROIs. This paper presents a novel methodology to optimize the locations of an individual's ROIs in the working memory system. Our strategy is to formulate the individual ROI optimization as a group variance minimization problem, in which group-wise functional and structural connectivity patterns, and anatomic profiles are defined as optimization constraints. The optimization problem is solved via the simulated annealing approach. Our experimental results show that the optimized ROIs have significantly improved consistency in structural and functional profiles across subjects, and have more reasonable localizations and more consistent morphological and anatomic profiles.

[1]  Dinggang Shen,et al.  HAMMER: hierarchical attribute matching mechanism for elastic registration , 2002, IEEE Transactions on Medical Imaging.

[2]  Rainer Goebel,et al.  Investigating directed cortical interactions in time-resolved fMRI data using vector autoregressive modeling and Granger causality mapping. , 2003, Magnetic resonance imaging.

[3]  M. Fox,et al.  Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging , 2007, Nature Reviews Neuroscience.

[4]  Yingli Lu,et al.  Regional homogeneity approach to fMRI data analysis , 2004, NeuroImage.

[5]  Mirko Krivánek,et al.  Simulated Annealing: A Proof of Convergence , 1994, IEEE Trans. Pattern Anal. Mach. Intell..

[6]  D. V. van Essen,et al.  A tension-based theory of morphogenesis and compact wiring in the central nervous system. , 1997, Nature.

[7]  Karl J. Friston,et al.  Multivariate Autoregressive Modelling of fMRI time series , 2003 .

[8]  Lee Friedman,et al.  Report on a multicenter fMRI quality assurance protocol , 2006, Journal of magnetic resonance imaging : JMRI.

[9]  Olaf Sporns,et al.  The Human Connectome: A Structural Description of the Human Brain , 2005, PLoS Comput. Biol..

[10]  C. J. Honeya,et al.  Predicting human resting-state functional connectivity from structural connectivity , 2009 .

[11]  Christian Windischberger,et al.  Toward discovery science of human brain function , 2010, Proceedings of the National Academy of Sciences.

[12]  Polina Golland,et al.  Combining spatial priors and anatomical information for fMRI detection , 2010, Medical Image Anal..

[13]  Archana Venkataraman,et al.  Intrinsic functional connectivity as a tool for human connectomics: theory, properties, and optimization. , 2010, Journal of neurophysiology.

[14]  Kaiming Li,et al.  Cortical surface based identification of brain networks using high spatial resolution resting state FMRI data , 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[15]  Lei Guo,et al.  Brain tissue segmentation based on DTI data , 2007, NeuroImage.

[16]  Klaas E. Stephan,et al.  The anatomical basis of functional localization in the cortex , 2002, Nature Reviews Neuroscience.

[17]  Karl J. Friston,et al.  Dynamic causal modeling , 2010, Scholarpedia.

[18]  Jeonghun Ku,et al.  Artificial shifting of fMRI activation localized by volume- and surface-based analyses , 2008, NeuroImage.

[19]  Michael Brady,et al.  Improved Optimization for the Robust and Accurate Linear Registration and Motion Correction of Brain Images , 2002, NeuroImage.

[20]  Karl J. Friston Modalities, Modes, and Models in Functional Neuroimaging , 2009, Science.

[21]  Olaf Sporns,et al.  MR connectomics: Principles and challenges , 2010, Journal of Neuroscience Methods.