X‐ray crystallographic structure of a papain‐leupeptin complex

The three‐dimensional structure of the papain‐leupeptin complex has been determined by X‐ray crystallography to a resolution of 2.1 Å (overall R‐factor = 19.8%). The structure indicates that: (i) leupeptin contacts the S subsites of the papain active site and not the S'subsites; (ii) the ‘carbonyl’ carbon atom of the inhibitor is covalently bound by the Cys‐25 sulphur atom of papain and is tetrahedrally coordinated; (iii) the ‘carbonyl’ oxygen atom of the inhibitor faces the oxyanion hole and makes hydrogen bond contacts with Gln‐19 and Cys‐25.

[1]  L. Polgár,et al.  Current problems in mechanistic studies of serine and cysteine proteinases. , 1982, The Biochemical journal.

[2]  Jones Ta,et al.  Diffraction methods for biological macromolecules. Interactive computer graphics: FRODO. , 1985, Methods in enzymology.

[3]  C. A. Lewis,et al.  Thiohemiacetal formation by inhibitory aldehydes at the active site of papain. , 1977, Biochemistry.

[4]  R. Thompson Peptide aldehydes: potent inhibitors of serine and cysteine proteases. , 1977, Methods in enzymology.

[5]  H. Mizuno,et al.  Refined x-ray structure of papain.E-64-c complex at 2.1-A resolution. , 1993, The Journal of biological chemistry.

[6]  C. P. Huber,et al.  Crystal structure of a papain-E-64 complex. , 1989, Biochemistry.

[7]  L. Polgár,et al.  Mechanism of action of cysteine proteinases: oxyanion binding site is not essential in the hydrolysis of specific substrates. , 1985, Biochemistry.

[8]  L. Sluyterman,et al.  An agarose mercurial column for the separation of mercaptopapain and nonmercaptopapain. , 1970, Biochimica et biophysica acta.

[9]  S. Shafiq,et al.  Successful treatment of murine muscular dystrophy with the proteinase inhibitor leupeptin. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[10]  A. Frankfater,et al.  Mechanism of association of N-acetyl-L-phenylalanylglycinal to papain. , 1981, Biochemistry.

[11]  G. Lowe,et al.  Inhibition of papain by N-acyl-aminoacetaldehydes and N-acyl-aminopropanones. Evidence for hemithioacetal formation by a cross-saturation technique in nuclear-magnetic resonance spectroscopy. , 1977, European journal of biochemistry.

[12]  C Baboonian,et al.  Proteinase Inhibitors , 2020, Bayer-Symposium.

[13]  H Umezawa,et al.  Low-molecular-weight enzyme inhibitors of microbial origin. , 1982, Annual review of microbiology.

[14]  K. H. Kalk,et al.  Binding of chloromethyl ketone substrate analogues to crystalline papain. , 1977, Biochemistry.

[15]  Toshimasa Ishida,et al.  Crystal structure of papain-E64-c complex. Binding diversity of E64-c to papain S2 and S3 subsites. , 1992 .

[16]  M. Karplus,et al.  Crystallographic R Factor Refinement by Molecular Dynamics , 1987, Science.

[17]  A. Fink,et al.  Mechanism of thiol protease catalysis: detection and stabilization of a tetrahedral intermediate in papain catalysis. , 1979, Biochemistry.

[18]  Inhibition of chicken calpain II by proteins of the cystatin superfamily and alpha 2-macroglobulin. , 1987, The Biochemical journal.

[19]  D. S. Neblock,et al.  The proteinase inhibitors leupeptin, pepstatin A, and TLCK cause reduced collagen production in freshly isolated embryonic chick fibroblasts in suspension culture. , 1984, Archives of biochemistry and biophysics.

[20]  A. Fink,et al.  Mechanism of Action of papain with a specific anilide substrate. , 1979, Biochemistry.

[21]  R. Schultz,et al.  Active and inactive forms of the transition-state analog protease inhibitor leupeptin: explanation of the observed slow binding of leupeptin to cathepsin B and papain. , 1989, The Journal of biological chemistry.

[22]  R. Ménard,et al.  Contribution of the glutamine 19 side chain to transition-state stabilization in the oxyanion hole of papain. , 1991, Biochemistry.

[23]  L. Polgár,et al.  Transition-state stabilization at the oxyanion binding sites of serine and thiol proteinases: hydrolyses of thiono and oxygen esters. , 1983, Biochemistry.

[24]  I. G. Kamphuis,et al.  Structure of papain refined at 1.65 A resolution. , 1984, Journal of molecular biology.

[25]  K. Brocklehurst,et al.  Chapter 2 Cysteine proteinases , 1987 .

[26]  S. Grant,et al.  13C NMR study of the stereospecificity of the thiohemiacetals formed on inhibition of papain by specific enantiomeric aldehydes. , 1986, Biochemistry.

[27]  A. Berger,et al.  On the size of the active site in proteases. I. Papain. , 1967, Biochemical and biophysical research communications.

[28]  R. Huber,et al.  The refined 2.4 A X‐ray crystal structure of recombinant human stefin B in complex with the cysteine proteinase papain: a novel type of proteinase inhibitor interaction. , 1990, The EMBO journal.

[29]  L. Ostrowski,et al.  Selective inhibition of proteolytic enzymes in an in vivo mouse model for experimental metastasis. , 1986, Cancer research.