Comparative analysis of ROS-scavenging gene families in finger millet, rice, sorghum, and foxtail millet revealed potential targets for antioxidant activity and drought tolerance improvement

[1]  Damian Szklarczyk,et al.  STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets , 2018, Nucleic Acids Res..

[2]  V. Gupta,et al.  Transcriptome-wide identification of genes involved in Ascorbate–Glutathione cycle (Halliwell–Asada pathway) and related pathway for elucidating its role in antioxidative potential in finger millet (Eleusine coracana (L.)) , 2018, 3 Biotech.

[3]  S. Gupta,et al.  Systems biology of seeds: decoding the secret of biochemical seed factories for nutritional security , 2018, 3 Biotech.

[4]  R. Pathak,et al.  Augmentation of crop productivity through interventions of omics technologies in India: challenges and opportunities , 2018, 3 Biotech.

[5]  S. Ignacimuthu,et al.  Finger Millet [Eleusine coracana (L.) Gaertn.] Improvement: Current Status and Future Interventions of Whole Genome Sequence , 2018, Front. Plant Sci..

[6]  A. Kumar,et al.  The role of tripartite interaction of calcium sensors and transporters in the accumulation of calcium in finger millet grain , 2018, Biologia Plantarum.

[7]  P. Dash,et al.  Structural, Functional, and Evolutionary Characterization of Major Drought Transcription Factors Families in Maize , 2018, Front. Chem..

[8]  Caiping Cai,et al.  Genome-wide identification and characterization of SPL transcription factor family and their evolution and expression profiling analysis in cotton , 2018, Scientific Reports.

[9]  R. Pathak,et al.  Modeling of the jasmonate signaling pathway in Arabidopsis thaliana with respect to pathophysiology of Alternaria blight in Brassica , 2017, Scientific Reports.

[10]  K. Griffiths,et al.  The Role of Food Antioxidants, Benefits of Functional Foods, and Influence of Feeding Habits on the Health of the Older Person: An Overview , 2017, Antioxidants.

[11]  R. Pathak,et al.  Molecular characterization of EcCIPK24 gene of finger millet (Eleusine coracana) for investigating its regulatory role in calcium transport , 2017, 3 Biotech.

[12]  S. Puranik,et al.  Harnessing Finger Millet to Combat Calcium Deficiency in Humans: Challenges and Prospects , 2017, Front. Plant Sci..

[13]  F. Dunshea,et al.  Dietary Phytochemicals Promote Health by Enhancing Antioxidant Defence in a Pig Model , 2017, Nutrients.

[14]  Shailaja Hittalmani,et al.  Genome and Transcriptome sequence of Finger millet (Eleusine coracana (L.) Gaertn.) provides insights into drought tolerance and nutraceutical properties , 2017, BMC Genomics.

[15]  S. Arora,et al.  Finger Millet: A “Certain” Crop for an “Uncertain” Future and a Solution to Food Insecurity and Hidden Hunger under Stressful Environments , 2017, Front. Plant Sci..

[16]  S. Arora,et al.  Abiotic Stress Tolerance in Plants: Myriad Roles of Ascorbate Peroxidase , 2017, Front. Plant Sci..

[17]  M. Dikshit,et al.  Corrigendum: Altered glucose and lipid homeostasis in liver and adipose tissue pre-dispose inducible NOS knockout mice to insulin resistance , 2017, Scientific reports.

[18]  G. Pazour,et al.  Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness , 2017, Scientific Reports.

[19]  Anil Kumar,et al.  Gene Discovery and Advances in Finger Millet [Eleusine coracana (L.) Gaertn.] Genomics—An Important Nutri-Cereal of Future , 2016, Front. Plant Sci..

[20]  Atul Gupta,et al.  Nutraceutical Value of Finger Millet [Eleusine coracana (L.) Gaertn.], and Their Improvement Using Omics Approaches , 2016, Front. Plant Sci..

[21]  Himanshu Avashthi,et al.  Insights using the molecular model of Lipoxygenase from Finger millet (Eleusine coracana (L.)) , 2016, Bioinformation.

[22]  Vinay Kumar Singh,et al.  MFPPI – Multi FASTA ProtParam Interface , 2016, Bioinformation.

[23]  Xiao‐Ru Wang,et al.  Molecular Properties and Functional Divergence of the Dehydroascorbate Reductase Gene Family in Lower and Higher Plants , 2015, PloS one.

[24]  Yan Peng,et al.  Clones of FeSOD, MDHAR, DHAR Genes from White Clover and Gene Expression Analysis of ROS-Scavenging Enzymes during Abiotic Stress and Hormone Treatments , 2015, Molecules.

[25]  Anil Kumar,et al.  Systems Biology for Smart Crops and Agricultural Innovation: Filling the Gaps between Genotype and Phenotype for Complex Traits Linked with Robust Agricultural Productivity and Sustainability. , 2015, Omics : a journal of integrative biology.

[26]  S. Arora,et al.  Insilico Analysis of cis acting Regulatory Elements CAREs in Upstream Regions of Ascorbate Glutathione Pathway Genes from Oryza sativa , 2015 .

[27]  Hongjie Li,et al.  Transcriptomic Analysis of Drought Stress Responses in Ammopiptanthus mongolicus Leaves Using the RNA-Seq Technique , 2015, PloS one.

[28]  D. Pal,et al.  Free radicals, natural antioxidants, and their reaction mechanisms , 2015 .

[29]  Bo Hu,et al.  GSDS 2.0: an upgraded gene feature visualization server , 2014, Bioinform..

[30]  Vikram Singh Gaur,et al.  De Novo Assembly and Characterization of Developing Spikes Transcriptome of Finger Millet (Eleusine coracana): a Minor Crop Having Nutraceutical Properties , 2014, Plant Molecular Biology Reporter.

[31]  A. Roychoudhury,et al.  Reactive oxygen species (ROS) and response of antioxidants as ROS-scavengers during environmental stress in plants , 2014, Front. Environ. Sci..

[32]  K. Shinozaki,et al.  The transcriptional regulatory network in the drought response and its crosstalk in abiotic stress responses including drought, cold, and heat , 2014, Front. Plant Sci..

[33]  R. Pathak,et al.  In silico identification of MAPK3/6 substrates in WRKY, bZIP, MYB, MYB- related, NAC and AP-2 transcription factor family in Arabidopsis thaliana , 2014 .

[34]  A. Phaniendra,et al.  Free Radicals: Properties, Sources, Targets, and Their Implication in Various Diseases , 2014, Indian Journal of Clinical Biochemistry.

[35]  Koichiro Tamura,et al.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.

[36]  J. Aprioku Pharmacology of Free Radicals and the Impact of Reactive Oxygen Species on the Testis , 2013, Journal of reproduction & infertility.

[37]  T. Gerats,et al.  Plant tolerance to high temperature in a changing environment: scientific fundamentals and production of heat stress-tolerant crops , 2013, Front. Plant Sci..

[38]  A. Singh,et al.  Significance of coarse cereals in health and nutrition: a review , 2014, Journal of Food Science and Technology.

[39]  R. Oelmüller,et al.  Reactive oxygen species generation and signaling in plants , 2012, Plant signaling & behavior.

[40]  M. Udvardi,et al.  Global regulation of reactive oxygen species scavenging genes in alfalfa root and shoot under gradual drought stress and recovery , 2012, Plant signaling & behavior.

[41]  Omer Kalayci,et al.  Oxidative Stress and Antioxidant Defense , 2012, The World Allergy Organization journal.

[42]  Kazuo Shinozaki,et al.  Genome-Wide Survey and Expression Analysis of the Plant-Specific NAC Transcription Factor Family in Soybean During Development and Dehydration Stress , 2011, DNA research : an international journal for rapid publication of reports on genes and genomes.

[43]  N. Tuteja,et al.  Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants. , 2010, Plant physiology and biochemistry : PPB.

[44]  V. Lobo,et al.  Free radicals, antioxidants and functional foods: Impact on human health , 2010, Pharmacognosy reviews.

[45]  Tom Beeckman,et al.  Auxin control of root development. , 2010, Cold Spring Harbor perspectives in biology.

[46]  P. Lin,et al.  Chemical and molecular mechanisms of antioxidants: experimental approaches and model systems , 2009, Journal of cellular and molecular medicine.

[47]  R. Dubey,et al.  Nickel-induced oxidative stress and the role of antioxidant defence in rice seedlings , 2009, Plant Growth Regulation.

[48]  Paolo Zamboni,et al.  Oxidative Stress and Neurodegenerative Diseases: A Review of Upstream and Downstream Antioxidant Therapeutic Options , 2009, Current neuropharmacology.

[49]  K. Pandey,et al.  Plant polyphenols as dietary antioxidants in human health and disease , 2009, Oxidative medicine and cellular longevity.

[50]  Lien Ai Pham-Huy,et al.  Free Radicals, Antioxidants in Disease and Health , 2008, International journal of biomedical science : IJBS.

[51]  W. D. Milliano,et al.  Occurrence and location of tannins in finger millet grain and antioxidant activity of different grain types , 2007 .

[52]  J. Pincemail,et al.  [Oxidative stress]. , 2007, Revue medicale de Liege.

[53]  Kyongbum Lee,et al.  An algorithm for modularity analysis of directed and weighted biological networks based on edge-betweenness centrality , 2006, Bioinform..

[54]  Jenn-Kang Hwang,et al.  Prediction of protein subcellular localization , 2006, Proteins.

[55]  B. Halliwell Reactive Species and Antioxidants. Redox Biology Is a Fundamental Theme of Aerobic Life , 2006, Plant Physiology.

[56]  T. Chandra,et al.  ESR spectroscopic study reveals higher free radical quenching potential in kodo millet (Paspalum scrobiculatum) compared to other millets , 2005 .

[57]  C. Foyer,et al.  Redox Homeostasis and Antioxidant Signaling: A Metabolic Interface between Stress Perception and Physiological Responses , 2005, The Plant Cell Online.

[58]  Liliana Jiménez,et al.  Dietary Polyphenols and the Prevention of Diseases , 2005, Critical reviews in food science and nutrition.

[59]  Pallavi Sharma,et al.  Lead toxicity in plants , 2005 .

[60]  R. Mittler,et al.  Reactive oxygen gene network of plants. , 2004, Trends in plant science.

[61]  Jenn-Kang Hwang,et al.  Predicting subcellular localization of proteins for Gram‐negative bacteria by support vector machines based on n‐peptide compositions , 2004, Protein science : a publication of the Protein Society.

[62]  Hirohisa Kishino,et al.  Genomic background predicts the fate of duplicated genes: evidence from the yeast genome. , 2004, Genetics.

[63]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[64]  G. Muralikrishna,et al.  Evaluation of the antioxidant properties of free and bound phenolic acids from native and malted finger millet (ragi, Eleusine coracana Indaf-15). , 2002, Journal of agricultural and food chemistry.

[65]  Charanjit Kaur,et al.  Antioxidants in fruits and vegetables – the millennium’s health , 2001 .

[66]  R. L. Jones,et al.  Enzymes that scavenge reactive oxygen species are down-regulated prior to gibberellic acid-induced programmed cell death in barley aleurone. , 2001, Plant physiology.

[67]  Susumu Goto,et al.  KEGG: Kyoto Encyclopedia of Genes and Genomes , 2000, Nucleic Acids Res..

[68]  R D Appel,et al.  Protein identification and analysis tools in the ExPASy server. , 1999, Methods in molecular biology.

[69]  K. Shinozaki,et al.  Role of arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. , 1997, The Plant cell.

[70]  K. Asada The Role of Ascorbate Peroxidase and Monodehydroascorbate Reductase in H 2 O 2 Scavenging in Plants , 1997 .

[71]  T. Chandra,et al.  ESR spectroscopic studies on free radical quenching action of finger millet (Eleusine coracana) , 1996 .

[72]  A. Hughes The evolution of functionally novel proteins after gene duplication , 1994, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[73]  W. Van Camp,et al.  Superoxide Dismutase in Plants , 1994 .

[74]  J. G. Scandalios Oxygen Stress and Superoxide Dismutases , 1993, Plant physiology.

[75]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[76]  L. Rooney,et al.  Structural Characteristics of Eleusine Corocana (Finger Millet) Using Scanning Electron and Fluorescence Microscopy , 1986 .

[77]  M. Shadaksharaswamy,et al.  Relationship between tannin levels and in vitro protein digestibility in finger millet (Eleusine coracana Gaertn.). , 1977, Journal of agricultural and food chemistry.