A novel protein kinase that controls carbon catabolite repression in bacteria

HPr(Ser) kinase is the sensor in a multicomponent phosphorelay system that controls catabolite repression, sugar transport and carbon metabolism in Gram‐positive bacteria. Unlike most other protein kinases, it recognizes the tertiary structure in its target protein, HPr, a phosphocarrier protein of the bacterial phosphotransferase system and a transcriptional cofactor controlling the phenomenon of catabolite repression. We have identified the gene (ptsK) encoding this serine/threonine protein kinase and characterized the purified protein product. Orthologues of PtsK have been identified only in bacteria. These proteins constitute a novel family unrelated to other previously characterized protein phosphorylating enzymes. The Bacillus subtilis kinase is shown to be allosterically activated by metabolites such as fructose 1,6‐bisphosphate and inhibited by inorganic phosphate. In contrast to wild‐type B. subtilis, the ptsK mutant is insensitive to transcriptional regulation by catabolite repression. The reported results advance our understanding of phosphorylation‐dependent carbon control mechanisms in Gram‐positive bacteria.

[1]  A. Goffeau,et al.  The complete genome sequence of the Gram-positive bacterium Bacillus subtilis , 1997, Nature.

[2]  R. Klevit,et al.  Binding of the Catabolite Repressor Protein CcpA to Its DNA Target Is Regulated by Phosphorylation of its Corepressor HPr* , 1997, The Journal of Biological Chemistry.

[3]  J. Deutscher,et al.  The Bacillus subtilis crh gene encodes a HPr-like protein involved in carbon catabolite repression. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[4]  M. Saier,et al.  Multiple Phosphorylation of SacY, a Bacillus subtilisTranscriptional Antiterminator Negatively Controlled by the Phosphotransferase System* , 1997, The Journal of Biological Chemistry.

[5]  M. Rose,et al.  Induction of the Bacillus subtilis ptsGHI operon by glucose is controlled by a novel antiterminator, GlcT , 1997, Molecular microbiology.

[6]  M. Saier,et al.  Modular multidomain phosphoryl transfer proteins of bacteria. , 1997, Current opinion in structural biology.

[7]  W. Hillen,et al.  Cooperative and non-cooperative DNA binding modes of catabolite control protein CcpA from Bacillus megaterium result from sensing two different signals. , 1997, Journal of molecular biology.

[8]  John Kuriyan,et al.  Crystal structure of the Src family tyrosine kinase Hck , 1997, Nature.

[9]  T. Hunter,et al.  The protein kinases of budding yeast: six score and more. , 1997, Trends in biochemical sciences.

[10]  A. Bairoch,et al.  The PROSITE database, its status in 1997 , 1997, Nucleic Acids Res..

[11]  M. Saier,et al.  Catabolite repression resistance of gnt operon expression in Bacillus subtilis conferred by mutation of His-15, the site of phosphoenolpyruvate-dependent phosphorylation of the phosphocarrier protein HPr , 1996, Journal of bacteriology.

[12]  M. Arnaud,et al.  In Vitro Reconstitution of Transcriptional Antitermination by the SacT and SacY Proteins of Bacillus subtilis* , 1996, The Journal of Biological Chemistry.

[13]  P. Kennelly,et al.  Fancy meeting you here! A fresh look at "prokaryotic" protein phosphorylation , 1996, Journal of bacteriology.

[14]  Cheng‐Cai Zhang,et al.  Bacterial signalling involving eukaryotic‐type protein kinases , 1996, Molecular microbiology.

[15]  I. Paulsen,et al.  Catabolite repression and inducer control in Gram-positive bacteria. , 1996, Microbiology.

[16]  F. Neidhardt,et al.  Phosphoenolpyruvate:carbohydrate phosphotransferase systems , 1996 .

[17]  G. Rapoport,et al.  Two different mechanisms mediate catabolite repression of the Bacillus subtilis levanase operon , 1995, Journal of bacteriology.

[18]  G. Rapoport,et al.  The HPr protein of the phosphotransferase system links induction and catabolite repression of the Bacillus subtilis levanase operon , 1995, Journal of bacteriology.

[19]  H. C. Wu,et al.  Structure-function relationship of bacterial prolipoprotein diacylglyceryl transferase: functionally significant conserved regions , 1995, Journal of bacteriology.

[20]  M. Hecker,et al.  Regulation of the putative bglPH operon for aryl-beta-glucoside utilization in Bacillus subtilis , 1995, Journal of bacteriology.

[21]  Y. Fujita,et al.  Specific recognition of the Bacillus subtilis gnt cis‐acting catabolite‐responsive element by a protein complex formed between CcpA and seryl‐phosphorylated HPr , 1995, Molecular microbiology.

[22]  M. Saier,et al.  Protein phosphorylation and regulation of carbon metabolism in gram-negative versus gram-positive bacteria. , 1995, Trends in biochemical sciences.

[23]  K. Rudd,et al.  The umpA gene of Escherichia coli encodes phosphatidylglycerol:prolipoprotein diacylglyceryl transferase (lgt) and regulates thymidylate synthase levels through translational coupling , 1995, Journal of bacteriology.

[24]  D. Court,et al.  Novel Proteins of the Phosphotransferase System Encoded within the rpoN Operon of Escherichia coli , 1995, The Journal of Biological Chemistry.

[25]  W. Hillen,et al.  Catabolite repression in Bacillus subtilis: a global regulatory mechanism for the Gram‐positive bacteria? , 1995, Molecular microbiology.

[26]  Randall F. Smith,et al.  Identification of a eukaryotic‐like protein kinase gene in Archaebacteria , 1995, Protein science : a publication of the Protein Society.

[27]  J. Reizer,et al.  The bacterial phosphotransferase system: new frontiers 30 years later , 1994, Molecular microbiology.

[28]  M. Saier,et al.  Loss of protein kinase-catalyzed phosphorylation of HPr, a phosphocarrier protein of the phosphotransferase system, by mutation of the ptsH gene confers catabolite repression resistance to several catabolic genes of Bacillus subtilis , 1994, Journal of bacteriology.

[29]  S. Hubbard,et al.  Protein kinase superfamily — comparisons of sequence data with three-dimensional structures , 1994 .

[30]  M. Hecker,et al.  Regulation of xylanolytic enzymes in Bacillus subtilis. , 1994, Microbiology.

[31]  M. Saier,et al.  Analysis of a cis-active sequence mediating catabolite repression in gram-positive bacteria. , 1994, Research in microbiology.

[32]  M. Saier,et al.  Bacterial protein kinases that recognize tertiary rather than primary structure? , 1994, Research in microbiology.

[33]  M. Hecker,et al.  Catabolite repression of beta-glucanase synthesis in Bacillus subtilis. , 1993, Journal of general microbiology.

[34]  E. Fischer Protein Phosphorylation and Cellular Regulation II (Nobel Lecture) , 1993 .

[35]  J. Deutscher,et al.  The role of phosphorylation of HPr, a phosphocarrier protein of the phosphotransferase system, in the regulation of carbon metabolism in gram‐positive bacteria , 1993, Journal of cellular biochemistry.

[36]  D. Laporte The isocitrate dehydrogenase phosphorylation cycle: Regulation and enzymology , 1993, Journal of cellular biochemistry.

[37]  A. Cozzone ATP‐dependent protein kinases in bacteria , 1993, Journal of cellular biochemistry.

[38]  G R Jacobson,et al.  Phosphoenolpyruvate:carbohydrate phosphotransferase systems of bacteria. , 1993, Microbiological reviews.

[39]  M. Saier,et al.  A proposed link between nitrogen and carbon metabolism involving protein phosphorylation in bacteria , 1992, Protein science : a publication of the Protein Society.

[40]  M. Saier,et al.  Functional interactions between proteins of the phosphoenolpyruvate:sugar phosphotransferase systems of Bacillus subtilis and Escherichia coli. , 1992, The Journal of biological chemistry.

[41]  M. Saier,et al.  Proposed uniform nomenclature for the proteins and protein domains of the bacterial phosphoenolpyruvate: sugar phosphotransferase system , 1992, Journal of bacteriology.

[42]  J. S. Parkinson,et al.  Communication modules in bacterial signaling proteins. , 1992, Annual review of genetics.

[43]  S. Inouye,et al.  A gene encoding a protein serine/threonine kinase is required for normal development of M. xanthus, a gram-negative bacterium , 1991, Cell.

[44]  R. Pearson,et al.  Protein kinase phosphorylation site sequences and consensus specificity motifs: tabulations. , 1991, Methods in enzymology.

[45]  T. Hunter,et al.  Protein kinase classification. , 1991, Methods in enzymology.

[46]  S. Hanks,et al.  Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. , 1991, Methods in enzymology.

[47]  M. Saier,et al.  Regulation of bacterial physiological processes by three types of protein phosphorylating systems. , 1990, Trends in biochemical sciences.

[48]  K. Mckenney,et al.  Hyperexpression and purification of Escherichia coli adenylate cyclase using a vector designed for expression of lethal gene products. , 1989, Nucleic acids research.

[49]  H. G. Nimmo,et al.  Studies of the phosphorylation of Escherichia coli isocitrate dehydrogenase. Recognition of the enzyme by isocitrate dehydrogenase kinase/phosphatase and effects of phosphorylation on its structure and properties. , 1989, Biochimie.

[50]  M. Saier,et al.  Mechanistic and physiological consequences of HPr(ser) phosphorylation on the activities of the phosphoenolpyruvate:sugar phosphotransferase system in gram‐positive bacteria: studies with site‐specific mutants of HPr. , 1989, The EMBO journal.

[51]  Susan S. Taylor,et al.  cAMP-dependent protein kinase. Model for an enzyme family. , 1989, The Journal of biological chemistry.

[52]  Desmond G. Higgins,et al.  Fast and sensitive multiple sequence alignments on a microcomputer , 1989, Comput. Appl. Biosci..

[53]  M. Saier Protein phosphorylation and allosteric control of inducer exclusion and catabolite repression by the bacterial phosphoenolpyruvate: sugar phosphotransferase system. , 1989, Microbiological reviews.

[54]  D. Barstow,et al.  The pMTL nic- cloning vectors. I. Improved pUC polylinker regions to facilitate the use of sonicated DNA for nucleotide sequencing. , 1988, Gene.

[55]  D. Laporte,et al.  Nucleotide sequence of aceK, the gene encoding isocitrate dehydrogenase kinase/phosphatase , 1988, Journal of bacteriology.

[56]  J. Reizer,et al.  Evidence for the presence of heat-stable protein (HPr) and ATP-dependent HPr kinase in heterofermentative lactobacilli lacking phosphoenolpyruvate:glycose phosphotransferase activity. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[57]  D. Lipman,et al.  Improved tools for biological sequence comparison. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[58]  D. Court,et al.  Analysis of nutR, a site required for transcription antitermination in phage lambda. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[59]  K. Beyreuther,et al.  Streptococcal phosphoenolpyruvate-sugar phosphotransferase system: amino acid sequence and site of ATP-dependent phosphorylation of HPr. , 1986, Biochemistry.

[60]  C. Yanisch-Perron,et al.  Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. , 1985, Gene.

[61]  M. Saier,et al.  Properties of ATP-dependent protein kinase from Streptococcus pyogenes that phosphorylates a seryl residue in HPr, a phosphocarrier protein of the phosphotransferase system , 1984, Journal of bacteriology.

[62]  J. Deutscher,et al.  Purification and characterization of an ATP-dependent protein kinase from Streptococcus faecalis , 1984 .

[63]  M. Saier,et al.  ATP-dependent protein kinase-catalyzed phosphorylation of a seryl residue in HPr, a phosphate carrier protein of the phosphotransferase system in Streptococcus pyogenes. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[64]  J. Hoch,et al.  1 – The Genetic Map of Bacillus subtilis , 1982 .

[65]  J. Hoch,et al.  Chromosomal location of pleiotropic negative sporulation mutations in Bacillus subtilis. , 1973, Genetics.

[66]  Jeffrey H. Miller Experiments in molecular genetics , 1972 .