NAC domain function and transcriptional control of a secondary cell wall master switch.

NAC domain transcription factors act as master switches for secondary cell wall thickening, but how they exert their function and how their expression is regulated remains unclear. Here we identify a loss-of-function point mutation in the NST1 gene of Medicago truncatula. The nst1-3 mutant shows no lignification in interfascicular fibers, as previously seen in tnt1 transposon insertion alleles. However, the C→A transversion, which causes a T94K mutation in the NST1 protein, leads to increased NST1 expression. Introduction of the same mutation into the Arabidopsis homolog SND1 causes both protein mislocalization and loss of target DNA binding, with a resultant inability to trans-activate downstream secondary wall synthesis genes. Furthermore, trans-activation assays show that the expression of SND1 operates under positive feedback control from itself, and SND1 was shown to bind directly to a conserved motif in its own promoter, located within a recently described 19-bp secondary wall NAC binding element. Three MYB transcription factors downstream of SND1, one of which is directly regulated by SND1, exert negative regulation on SND1 promoter activity. Our results identify a conserved amino acid critical for NST1/SND1 function, and show that the expression of the NAC master switch itself is under both positive (autoregulatory) and negative control.

[1]  T. Demura,et al.  VASCULAR-RELATED NAC-DOMAIN7 directly regulates the expression of a broad range of genes for xylem vessel formation. , 2011, The Plant journal : for cell and molecular biology.

[2]  R. Dixon,et al.  Mutation of WRKY transcription factors initiates pith secondary wall formation and increases stem biomass in dicotyledonous plants , 2010, Proceedings of the National Academy of Sciences.

[3]  R. Zhong,et al.  Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis. , 2010, Molecular plant.

[4]  R. Zhong,et al.  Evolutionary conservation of the transcriptional network regulating secondary cell wall biosynthesis. , 2010, Trends in plant science.

[5]  H. Fukuda,et al.  Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 Directly Regulates the Genes That Govern Programmed Cell Death and Secondary Wall Formation during Xylem Differentiation[C][W] , 2010, Plant Cell.

[6]  B. Sundberg,et al.  Walls are thin 1 (WAT1), an Arabidopsis homolog of Medicago truncatula NODULIN21, is a tonoplast-localized protein required for secondary wall formation in fibers. , 2010, The Plant journal : for cell and molecular biology.

[7]  T. Demura,et al.  Regulation of plant biomass production. , 2010, Current opinion in plant biology.

[8]  R. Dixon,et al.  An NAC transcription factor orchestrates multiple features of cell wall development in Medicago truncatula. , 2010, The Plant journal : for cell and molecular biology.

[9]  R. Zhong,et al.  MYB83 is a direct target of SND1 and acts redundantly with MYB46 in the regulation of secondary cell wall biosynthesis in Arabidopsis. , 2009, Plant & cell physiology.

[10]  Kyung-Hwan Han,et al.  Ectopic expression of MYB46 identifies transcriptional regulatory genes involved in secondary wall biosynthesis in Arabidopsis. , 2009, The Plant journal : for cell and molecular biology.

[11]  R. Dixon,et al.  A Bioinformatic Analysis of NAC Genes for Plant Cell Wall Development in Relation to Lignocellulosic Bioenergy Production , 2009, BioEnergy Research.

[12]  G. Theißen,et al.  Lepidium as a model system for studying the evolution of fruit development in Brassicaceae. , 2009, Journal of experimental botany.

[13]  R. Zhong,et al.  MYB58 and MYB63 Are Transcriptional Activators of the Lignin Biosynthetic Pathway during Secondary Cell Wall Formation in Arabidopsis[C][W] , 2009, The Plant Cell Online.

[14]  R. Zhong,et al.  A Battery of Transcription Factors Involved in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis , 2008, The Plant Cell Online.

[15]  T. Demura,et al.  Vascular-related NAC-DOMAIN7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots. , 2008, The Plant journal : for cell and molecular biology.

[16]  Patrick X Zhao,et al.  Large-scale Insertional Mutagenesis Using the Tnt1 Retrotransposon in the Model Legume Medicago Truncatula , 2007 .

[17]  Zheng-Hua Ye,et al.  Regulation of cell wall biosynthesis. , 2007, Current opinion in plant biology.

[18]  Z. Chen,et al.  Gene expression changes and early events in cotton fibre development. , 2007, Annals of botany.

[19]  R. Zhong,et al.  The MYB46 Transcription Factor Is a Direct Target of SND1 and Regulates Secondary Wall Biosynthesis in Arabidopsis , 2007, The Plant Cell Online.

[20]  T. Demura,et al.  TERE; a novel cis-element responsible for a coordinated expression of genes related to programmed cell death and secondary wall formation during differentiation of tracheary elements. , 2007, The Plant journal : for cell and molecular biology.

[21]  Andrew H. Park,et al.  ANAC012, a member of the plant-specific NAC transcription factor family, negatively regulates xylary fiber development in Arabidopsis thaliana. , 2007, The Plant journal : for cell and molecular biology.

[22]  K. Shinozaki,et al.  NAC Transcription Factors, NST1 and NST3, Are Key Regulators of the Formation of Secondary Walls in Woody Tissues of Arabidopsis[W][OA] , 2007, The Plant Cell Online.

[23]  T. Demura,et al.  SND1, a NAC Domain Transcription Factor, Is a Key Regulator of Secondary Wall Synthesis in Fibers of Arabidopsis[W] , 2006, The Plant Cell Online.

[24]  Michal Linial,et al.  Novel Unsupervised Feature Filtering of Biological Data , 2006, ISMB.

[25]  Jeffrey T. Leek,et al.  Gene expression EDGE : extraction and analysis of differential gene expression , 2006 .

[26]  K. Shinozaki,et al.  The NAC Transcription Factors NST1 and NST2 of Arabidopsis Regulate Secondary Wall Thickenings and Are Required for Anther Dehiscencew⃞ , 2005, The Plant Cell Online.

[27]  K. Mysore,et al.  Insertional mutagenesis: a Swiss Army knife for functional genomics of Medicago truncatula. , 2005, Trends in plant science.

[28]  Addie Nina Olsen,et al.  NAC transcription factors: structurally distinct, functionally diverse. , 2005, Trends in plant science.

[29]  K. Skriver,et al.  Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors , 2004, EMBO reports.

[30]  John D. Storey,et al.  Statistical significance for genomewide studies , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[31]  T. Speed,et al.  Summaries of Affymetrix GeneChip probe level data. , 2003, Nucleic acids research.

[32]  Dirk Inzé,et al.  GATEWAY vectors for Agrobacterium-mediated plant transformation. , 2002, Trends in plant science.

[33]  F. Ausubel,et al.  MAP kinase signalling cascade in Arabidopsis innate immunity , 2002, Nature.

[34]  J. Sheen Signal transduction in maize and Arabidopsis mesophyll protoplasts. , 2001, Plant physiology.

[35]  M. Pfaffl,et al.  A new mathematical model for relative quantification in real-time RT-PCR. , 2001, Nucleic acids research.

[36]  C. Li,et al.  Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[37]  N. Chua,et al.  Arabidopsis NAC1 transduces auxin signal downstream of TIR1 to promote lateral root development. , 2000, Genes & development.

[38]  C. Tonelli,et al.  Transcriptional repression by AtMYB4 controls production of UV‐protecting sunscreens in Arabidopsis , 2000, The EMBO journal.

[39]  S. Clough,et al.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. , 1998, The Plant journal : for cell and molecular biology.

[40]  J. Thompson,et al.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.