Characterization of Prochlorococcus clades from iron-depleted oceanic regions
暂无分享,去创建一个
Douglas B Rusch | A. Halpern | J. Venter | D. Rusch | C. Dupont | A. Martiny | Christopher L Dupont | Aaron L Halpern | J Craig Venter | Adam C Martiny
[1] P. Wincker,et al. Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria , 2008, Genome Biology.
[2] Raphael Kudela,et al. A massive phytoplankton bloom induced by an ecosystem-scale iron fertilization experiment in the equatorial Pacific Ocean , 1996, Nature.
[3] A. Halpern,et al. The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific , 2007, PLoS biology.
[4] D. Vaulot,et al. Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes. , 2007, Environmental microbiology.
[5] A. Grossman,et al. A photosynthetic strategy for coping in a high‐light, low‐nutrient environment , 2008 .
[6] I. Joint,et al. Detailed analysis of the microdiversity of Prochlorococcus populations along a north-south Atlantic ocean transect. , 2010, Environmental microbiology.
[7] M. Malakhov,et al. Balanced regulation of expression of the gene for cytochrome c M and that of genes for plastocyanin and cytochrome c 6 in Synechocystis , 1999, FEBS letters.
[8] Sean R. Eddy,et al. Profile hidden Markov models , 1998, Bioinform..
[9] Julian Gough,et al. Genomic scale sub-family assignment of protein domains , 2006, Nucleic acids research.
[10] Ulf Riebesell,et al. Synthesis of iron fertilization experiments: From the iron age in the age of enlightenment , 2005 .
[11] R. Haselkorn,et al. Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment , 2006, Proceedings of the National Academy of Sciences.
[12] Maureen L. Coleman,et al. Genomic Islands and the Ecology and Evolution of Prochlorococcus , 2006, Science.
[13] Feng Chen,et al. Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus , 2007, PLoS genetics.
[14] Nicholas H Mann,et al. Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence of Synechococcus host genes localized to a hyperplastic region: implications for mechanisms of cyanophage evolution. , 2009, Environmental microbiology.
[15] D. Scanlan. Physiological diversity and niche adaptation in marine Synechococcus. , 2003, Advances in microbial physiology.
[16] S. Chisholm,et al. Prochlorococcus Ecotype Abundances in the North Atlantic Ocean As Revealed by an Improved Quantitative PCR Method , 2006, Applied and Environmental Microbiology.
[17] J. Thompson,et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.
[18] S. Doney,et al. Iron cycling and nutrient-limitation patterns in surface waters of the World Ocean , 2001 .
[19] C. Braak. Canonical Correspondence Analysis: A New Eigenvector Technique for Multivariate Direct Gradient Analysis , 1986 .
[20] Sergey Koren,et al. Aggressive assembly of pyrosequencing reads with mates , 2008, Bioinform..
[21] Lisa R. Moore,et al. Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes , 1998, Nature.
[22] P. Raimbault,et al. Nutrient limitation of primary productivity in the Southeast Pacific (BIOSOPE cruise) , 2007 .
[23] E. Delong,et al. Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior , 2006, Science.
[24] Adam C. Martiny,et al. Widespread metabolic potential for nitrite and nitrate assimilation among Prochlorococcus ecotypes , 2009, Proceedings of the National Academy of Sciences.
[25] John A. Raven,et al. The role of trace metals in photosynthetic electron transport in O2-evolving organisms , 1999, Photosynthesis Research.
[26] R. Kudela,et al. Photosynthesis in the Open Ocean , 2009, Science.
[27] A G Murzin,et al. SCOP: a structural classification of proteins database for the investigation of sequences and structures. , 1995, Journal of molecular biology.
[28] Jeff Shrager,et al. Alternative photosynthetic electron flow to oxygen in marine Synechococcus. , 2008, Biochimica et biophysica acta.
[29] Weizhong Li,et al. Occurrence of phosphate acquisition genes in Prochlorococcus cells from different ocean regions. , 2009, Environmental microbiology.
[30] F. Chavez,et al. Controls on tropical Pacific Ocean productivity revealed through nutrient stress diagnostics , 2006, Nature.
[31] A. J. Watson,et al. Testing the iron hypothesis in ecosystems of the equatorial Pacific Ocean , 1994, Nature.
[32] S. Chisholm,et al. Measurement of Prochlorococcus ecotypes using real-time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies. , 2006, Environmental microbiology.
[33] S. Chisholm,et al. Taxonomic resolution, ecotypes and the biogeography of Prochlorococcus. , 2009, Environmental microbiology.
[34] A. Abelmann,et al. Spatial and seasonal changes of radiolarian standing stocks in the Sea of Okhotsk , 2002 .
[35] Maureen L. Coleman,et al. Phosphate acquisition genes in Prochlorococcus ecotypes: Evidence for genome-wide adaptation , 2006, Proceedings of the National Academy of Sciences.
[36] Maureen L. Coleman,et al. Three Prochlorococcus Cyanophage Genomes: Signature Features and Ecological Interpretations , 2005, PLoS biology.
[37] A. Rivers,et al. Iron stress genes in marine Synechococcus and the development of a flow cytometric iron stress assay. , 2009, Environmental microbiology.
[38] Manesh Shah,et al. Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation , 2003, Nature.
[39] Philip E. Bourne,et al. Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry , 2006, Proceedings of the National Academy of Sciences.
[40] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[41] H. Bouman,et al. Oceanographic Basis of the Global Surface Distribution of Prochlorococcus Ecotypes , 2006, Science.
[42] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[43] Sallie W. Chisholm,et al. Niche Partitioning Among Prochlorococcus Ecotypes Along Ocean-Scale Environmental Gradients , 2006, Science.
[44] Graham F Hatfull,et al. Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus. , 2007, Environmental microbiology.
[45] I. Hewson,et al. Metagenomic potential of microbial assemblages in the surface waters of the central Pacific Ocean tracks variability in oceanic habitat , 2009 .
[46] Elizabeth L. Mann,et al. Differential response of equatorial Pacific phytoplankton to iron fertilization , 1999 .
[47] D. Vaulot,et al. Prochlorococcus, a Marine Photosynthetic Prokaryote of Global Significance , 1999, Microbiology and Molecular Biology Reviews.
[48] R. Murtugudde,et al. Annual ecosystem variability in the tropical Indian Ocean: Results of a coupled bio-physical ocean general circulation model , 2006 .
[49] G. Peschek,et al. Cyanobacterial cytochrome c(M): probing its role as electron donor for Cu(A) of cytochrome c oxidase. , 2009, Biochimica et biophysica acta.
[50] P. Raimbault,et al. High vertical and low horizontal diversity of Prochlorococcus ecotypes in the Mediterranean Sea in summer. , 2007, FEMS microbiology ecology.
[51] Bryan A. Franz,et al. Satellite-detected fluorescence reveals global physiology of ocean phytoplankton , 2008 .
[52] Randy Showstack,et al. World Ocean Database , 2009 .
[53] Philip E. Bourne,et al. History of biological metal utilization inferred through phylogenomic analysis of protein structures , 2010, Proceedings of the National Academy of Sciences.
[54] D. Scanlan,et al. Basin-scale distribution patterns of picocyanobacterial lineages in the Atlantic Ocean. , 2007, Environmental microbiology.
[55] Nicholas H. Putnam,et al. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation , 2007, Proceedings of the National Academy of Sciences.
[56] S. Bonnet,et al. Dissolved iron distribution in the tropical and sub tropical South Eastern Pacific , 2007 .
[57] A. Grossman,et al. An original adaptation of photosynthesis in the marine green alga Ostreococcus , 2008, Proceedings of the National Academy of Sciences.
[58] Michael Y. Galperin,et al. Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[59] R. Murtugudde,et al. The Sensitivity of the Southwest Monsoon Phytoplankton Bloom to Variations in Aeolian Iron Deposition over the Arabian Sea , 2007 .