Comparative Metagenomics Revealed Commonly Enriched Gene Sets in Human Gut Microbiomes
暂无分享,去创建一个
Hiroshi Mori | Yoshiyuki Sakaki | Toshihisa Takagi | Vineet K. Sharma | Masahira Hattori | Hidetoshi Morita | Atsushi Toyoda | Ken Kurokawa | Hideto Takami | Hideki Noguchi | Tetsuya Hayashi | Todd D. Taylor | M. Hattori | Tetsuya Hayashi | K. Kurokawa | T. Takagi | Y. Sakaki | T. Itoh | A. Toyoda | T. Taylor | H. Morita | H. Noguchi | T. Kuwahara | K. Itoh | K. Oshima | H. Takami | Y. Ogura | Hiroshi Mori | Hidehiro Toh | Tulika P. Srivastava | Yoshitoshi Ogura | D. Ehrlich | Kikuji Itoh | Takehiko Itoh | Kenshiro Oshima | Hidehiro Toh | Tomomi Kuwahara | Dusko S. Ehrlich | Tulika Srivastava | Vineet K. Sharma | Vineet K. Sharma | Yoshitoshi Ogura
[1] Charles Elkan,et al. Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer , 1994, ISMB.
[2] R. Ley,et al. Ecological and Evolutionary Forces Shaping Microbial Diversity in the Human Intestine , 2006, Cell.
[3] Mihai Pop,et al. Microbiome Metagenomic Analysis of the Human Distal Gut , 2009 .
[4] Julian Parkhill,et al. The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome , 2006, Nature Genetics.
[5] H. Flint,et al. The Butyrivibrio fibrisolvens tet(W) Gene Is Carried on the Novel Conjugative Transposon TnB1230, Which Contains Duplicated Nitroreductase Coding Sequences , 2004, Journal of bacteriology.
[6] E. Mardis,et al. An obesity-associated gut microbiome with increased capacity for energy harvest , 2006, Nature.
[7] B. Snel,et al. SHOT: a web server for the construction of genome phylogenies. , 2002, Trends in genetics : TIG.
[8] P. Hylemon,et al. Diet, anaerobic bacterial metabolism, and colon cancer: a review of the literature. , 2005, Journal of clinical gastroenterology.
[9] C. Manichanh,et al. Review article: the role of bacteria in onset and perpetuation of inflammatory bowel disease , 2006, Alimentary pharmacology & therapeutics.
[10] Ruslan Medzhitov,et al. Recognition of Commensal Microflora by Toll-Like Receptors Is Required for Intestinal Homeostasis , 2004, Cell.
[11] E. Delong,et al. Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior , 2006, Science.
[12] J. Gordon,et al. A Model of Host-Microbial Interactions in an Open Mammalian Ecosystem , 1996, Science.
[13] M. Pop,et al. Metagenomic Analysis of the Human Distal Gut Microbiome , 2006, Science.
[14] P. Turnbaugh,et al. Microbial ecology: Human gut microbes associated with obesity , 2006, Nature.
[15] W. D. de Vos,et al. Molecular Monitoring of Succession of Bacterial Communities in Human Neonates , 2002, Applied and Environmental Microbiology.
[16] J. Gordon,et al. A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[17] H. Sahl,et al. The co-evolution of host cationic antimicrobial peptides and microbial resistance , 2006, Nature Reviews Microbiology.
[18] C. Tancrède. Role of human microflora in health and disease , 1992, European Journal of Clinical Microbiology and Infectious Diseases.
[19] O. White,et al. Environmental Genome Shotgun Sequencing of the Sargasso Sea , 2004, Science.
[20] D. Savage. Microbial biota of the human intestine: a tribute to some pioneering scientists. , 2001, Current issues in intestinal microbiology.
[21] J. Gordon,et al. Commensal Host-Bacterial Relationships in the Gut , 2001, Science.
[22] C. Dutta,et al. Reverse Polarization in Amino acid and Nucleotide Substitution Patterns Between Human–Mouse Orthologs of Two Compositional Extrema , 2007, DNA research : an international journal for rapid publication of reports on genes and genomes.
[23] P. Glaser,et al. Characterization of transposon Tn1549, conferring VanB-type resistance in Enterococcus spp. , 2000, Microbiology.
[24] M. Loreau,et al. Biodiversity and ecosystem productivity in a fluctuating environment: the insurance hypothesis. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[25] T. Takagi,et al. MetaGene: prokaryotic gene finding from environmental genome shotgun sequences , 2006, Nucleic acids research.
[26] E. Purdom,et al. Diversity of the Human Intestinal Microbial Flora , 2005, Science.
[27] A. Murray,et al. Investigations into the influence of host genetics on the predominant eubacteria in the faecal microflora of children. , 2005, Journal of medical microbiology.
[28] S. Finegold,et al. CHAPTER 1 – Normal Indigenous Intestinal Flora , 1983 .
[29] T. Macdonald,et al. Immunity, Inflammation, and Allergy in the Gut , 2005, Science.
[30] T. Sugimura,et al. Food-derived mutagens and carcinogens. , 1992, Cancer research.
[31] S. Tringe,et al. Comparative Metagenomics of Microbial Communities , 2004, Science.
[32] Ting Wang,et al. The gut microbiota as an environmental factor that regulates fat storage. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[33] Y. Benno,et al. Comparison of fecal microflora of elderly persons in rural and urban areas of Japan , 1989, Applied and environmental microbiology.
[34] C. Manichanh,et al. Reduced diversity of faecal microbiota in Crohn’s disease revealed by a metagenomic approach , 2005, Gut.
[35] F. Bäckhed,et al. Host-Bacterial Mutualism in the Human Intestine , 2005, Science.
[36] F. Guarner,et al. Gut flora in health and disease , 2003, The Lancet.
[37] G. Macfarlane,et al. Age and disease related changes in intestinal bacterial populations assessed by cell culture, 16S rRNA abundance, and community cellular fatty acid profiles , 2001, Gut.
[38] Edward M. Rubin,et al. Metagenomics: DNA sequencing of environmental samples , 2005, Nature Reviews Genetics.
[39] Satoru Miyano,et al. Open source clustering software , 2004 .
[40] T. D. Read,et al. Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis , 2003, Science.
[41] D. Clewell,et al. Evidence for a chromosome-borne resistance transposon (Tn916) in Streptococcus faecalis that is capable of "conjugal" transfer in the absence of a conjugative plasmid , 1981, Journal of bacteriology.
[42] Christos A. Ouzounis,et al. Measuring genome conservation across taxa: divided strains and united kingdoms , 2005, Nucleic acids research.
[43] Anton J. Enright,et al. An efficient algorithm for large-scale detection of protein families. , 2002, Nucleic acids research.
[44] G R Gibson,et al. Dietary modulation of the human colonic microbiota: introducing the concept of prebiotics. , 1995, The Journal of nutrition.
[45] Michal J. Nagiec,et al. Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[46] Robert D. Finn,et al. Pfam: clans, web tools and services , 2005, Nucleic Acids Res..
[47] R. Giroux,et al. Characterization of a Tn5382-like transposon containing the vanB2 gene cluster in a Clostridium strain isolated from human faeces. , 2005, The Journal of antimicrobial chemotherapy.
[48] M. Hattori,et al. A novel method for making nested deletions and its application for sequencing of a 300 kb region of human APP locus. , 1997, Nucleic acids research.
[49] S. Fanaro,et al. Intestinal microflora in early infancy: composition and development , 2003, Acta paediatrica (Oslo, Norway : 1992). Supplement.
[50] L. Hillier,et al. PCAP: a whole-genome assembly program. , 2003, Genome research.
[51] Paul D. R. Johnson,et al. Transfer of Vancomycin Resistance Transposon Tn1549 from Clostridium symbiosum to Enterococcus spp. in the Gut of Gnotobiotic Mice , 2006, Antimicrobial Agents and Chemotherapy.