A Polysaccharide Utilization Locus from an Uncultured Bacteroidetes Phylotype Suggests Ecological Adaptation and Substrate Versatility
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P. B. Pope | A. Mackenzie | J. Fangel | V. Eijsink | A. Naas | W. Willats | J. Agger | A. K. Mackenzie | A. E. Naas | S. K. Kracun | J. Schückel | J. U. Fangel | J. W. Agger | W. G. T. Willats | V. G. H. Eijsink | J. Schückel | S. K. Kračun | P. Pope
[1] J. Gordon,et al. Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices. , 2008, Structure.
[2] H. Gilbert,et al. Understanding How the Complex Molecular Architecture of Mannan-degrading Hydrolases Contributes to Plant Cell Wall Degradation* , 2013, The Journal of Biological Chemistry.
[3] H. Gilbert,et al. The modular architecture of Cellvibrio japonicus mannanases in glycoside hydrolase families 5 and 26 points to differences in their role in mannan degradation. , 2003, The Biochemical journal.
[4] J Kirby,et al. Dockerin-like sequences in cellulases and xylanases from the rumen cellulolytic bacterium Ruminococcus flavefaciens. , 1997, FEMS microbiology letters.
[5] T. Scheffer,et al. Taxonomic metagenome sequence assignment with structured output models , 2011, Nature Methods.
[6] A. Mackenzie,et al. Do Rumen Bacteroidetes Utilize an Alternative Mechanism for Cellulose Degradation? , 2014, mBio.
[7] A. S. Blix,et al. Seasonal changes in the ruminal microflora of the high-arctic Svalbard reindeer (Rangifer tarandus platyrhynchus) , 1985, Applied and environmental microbiology.
[8] L. Ten,et al. Development of a plate technique for screening of polysaccharide-degrading microorganisms by using a mixture of insoluble chromogenic substrates. , 2004, Journal of microbiological methods.
[9] A. Travis,et al. 16S rDNA library-based analysis of ruminal bacterial diversity , 2004, Antonie van Leeuwenhoek.
[10] S. Tringe,et al. Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen , 2011, Science.
[11] Eric C. Martens,et al. Complex Glycan Catabolism by the Human Gut Microbiota: The Bacteroidetes Sus-like Paradigm , 2009, The Journal of Biological Chemistry.
[12] Dmitry A Rodionov,et al. New Substrates for Tonb-dependent Transport: Do We Only See the 'tip of the Iceberg'? , 2022 .
[13] A. Boraston,et al. Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes , 2012, Proceedings of the National Academy of Sciences.
[14] C. Forsberg,et al. Cel9D, an Atypical 1,4-β-d-Glucan Glucohydrolase from Fibrobacter succinogenes: Characteristics, Catalytic Residues, and Synergistic Interactions with Other Cellulases , 2008, Journal of bacteriology.
[15] B. Henrissat,et al. Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5) , 2012, BMC Evolutionary Biology.
[16] M. Fields,et al. A Prevotella ruminicola B14 Operon Encoding Extracellular Polysaccharide Hydrolases , 1997, Current Microbiology.
[17] P. D. de Jong,et al. Ligation-independent cloning of PCR products (LIC-PCR). , 1990, Nucleic acids research.
[18] Bernard Henrissat,et al. Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome , 2013, PLoS biology.
[19] R. Mackie,et al. Transcriptomic Analyses of Xylan Degradation by Prevotella bryantii and Insights into Energy Acquisition by Xylanolytic Bacteroidetes* , 2010, The Journal of Biological Chemistry.
[20] Antony Bacic,et al. High-throughput mapping of cell-wall polymers within and between plants using novel microarrays. , 2007, The Plant journal : for cell and molecular biology.
[21] P. B. Pope,et al. Metagenomics of the Svalbard Reindeer Rumen Microbiome Reveals Abundance of Polysaccharide Utilization Loci , 2012, PloS one.
[22] A. Bacic,et al. Glycan profiling of plant cell wall polymers using microarrays. , 2012, Journal of visualized experiments : JoVE.
[23] J.-F. Cheng,et al. Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores , 2010, Proceedings of the National Academy of Sciences.
[24] H. Brumer,et al. A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes , 2014, Nature.
[25] J. Deisenhofer,et al. TonB-dependent receptors-structural perspectives. , 2002, Biochimica et biophysica acta.
[26] Zoë A Popper,et al. Primary cell wall composition of bryophytes and charophytes. , 2003, Annals of botany.
[27] T. Wood. Preparation of crystalline, amorphous, and dyed cellulase substrates , 1988 .
[28] J. Vogel. Unique aspects of the grass cell wall. , 2008, Current opinion in plant biology.
[29] R. Langvatn,et al. Forage chemistry and fermentation chambers in Svalbard reindeer (Rangifer tarandus platyrhynchus) , 1999 .
[30] M. Morrison,et al. Analysis of the bovine rumen microbiome reveals a diversity of Sus-like polysaccharide utilization loci from the bacterial phylum Bacteroidetes , 2014, Journal of Industrial Microbiology & Biotechnology.
[31] E. Martens,et al. How glycan metabolism shapes the human gut microbiota , 2012, Nature Reviews Microbiology.
[32] G. L. Miller. Use of Dinitrosalicylic Acid Reagent for Determination of Reducing Sugar , 1959 .
[33] Ümit V. Çatalyürek,et al. Metagenomic Insights into the Carbohydrate-Active Enzymes Carried by the Microorganisms Adhering to Solid Digesta in the Rumen of Cows , 2013, PloS one.
[34] Bernard Henrissat,et al. Recognition and Degradation of Plant Cell Wall Polysaccharides by Two Human Gut Symbionts , 2011, PLoS biology.
[35] J. Sonnenburg,et al. Specificity of Polysaccharide Use in Intestinal Bacteroides Species Determines Diet-Induced Microbiota Alterations , 2010, Cell.
[36] H. Gilbert,et al. Cloning and sequencing of the celA gene encoding endoglucanase A of Butyrivibrio fibrisolvens strain A46. , 1990, Journal of general microbiology.
[37] A. Mackenzie,et al. Two SusD-Like Proteins Encoded within a Polysaccharide Utilization Locus of an Uncultured Ruminant Bacteroidetes Phylotype Bind Strongly to Cellulose , 2012, Applied and Environmental Microbiology.