Exploring steric constraints on protein mutations using MAGE/PROBE
暂无分享,去创建一个
D. Richardson | S. Lovell | J. Word | B. K. Presley | David C. Richardson | J. Michael Word | Brent K. Presley | Simon C. Lovell | Robert C. Batemanm | Robert C. Batemanm
[1] Thomas K. Porter. Spherical shading , 1978, SIGGRAPH.
[2] S. Subbiah,et al. Prediction of protein side-chain conformation by packing optimization. , 1991, Journal of molecular biology.
[3] L. A. Lipscomb,et al. Context‐dependent protein stabilization by methionine‐to‐leucine substitution shown in T4 lysozyme , 1998, Protein science : a publication of the Protein Society.
[4] B. Matthews,et al. Energetic cost and structural consequences of burying a hydroxyl group within the core of a protein determined from Ala-->Ser and Val-->Thr substitutions in T4 lysozyme. , 1993, Biochemistry.
[5] B. Matthews,et al. A test of the "jigsaw puzzle" model for protein folding by multiple methionine substitutions within the core of T4 lysozyme. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[6] R. Huber,et al. Accurate Bond and Angle Parameters for X-ray Protein Structure Refinement , 1991 .
[7] K. Tsurugi,et al. The mechanism of action of ricin and related toxic lectins on eukaryotic ribosomes. The site and the characteristics of the modification in 28 S ribosomal RNA caused by the toxins. , 1987, The Journal of biological chemistry.
[8] M. Zalis,et al. Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms. , 1999, Journal of molecular biology.
[9] B. Matthews,et al. Hydrophobic packing in T4 lysozyme probed by cavity-filling mutants. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[10] Andrew Streitwieser,et al. Introduction to organic chemistry , 1976 .
[11] G J Williams,et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1978, Archives of biochemistry and biophysics.
[12] J. Richardson,et al. Role of arginine 180 and glutamic acid 177 of ricin toxin A chain in enzymatic inactivation of ribosomes , 1990, Molecular and cellular biology.
[13] K. Tsurugi,et al. Mechanism of action of ricin and related toxic lectins on eukaryotic ribosomes. , 1986, Nucleic acids symposium series.
[14] A. Frankel,et al. Structure of a ricin mutant showing rescue of activity by a noncatalytic residue. , 1992, Biochemistry.
[15] H. Scheraga,et al. Energy parameters in polypeptides. VII. Geometric parameters, partial atomic charges, nonbonded interactions, hydrogen bond interactions, and intrinsic torsional potentials for the naturally occurring amino acids , 1975 .
[16] G. Langlet,et al. International Tables for Crystallography , 2002 .
[17] S. Ghaemmaghami,et al. Folding kinetics of a fluorescent variant of monomeric lambda repressor. , 1998, Biochemistry.
[18] B. Matthews,et al. Structural basis of amino acid alpha helix propensity. , 1993, Science.
[19] B. Matthews,et al. Design and structural analysis of alternative hydrophobic core packing arrangements in bacteriophage T4 lysozyme. , 1993, Journal of molecular biology.
[20] B. Matthews,et al. Studies on protein stability with T4 lysozyme. , 1995, Advances in protein chemistry.
[21] B. Matthews,et al. Similar hydrophobic replacements of Leu99 and Phe153 within the core of T4 lysozyme have different structural and thermodynamic consequences. , 1993, Journal of molecular biology.
[22] J. Richardson,et al. The penultimate rotamer library , 2000, Proteins.
[23] Thomas Simonson,et al. Protein‐protein recognition: An experimental and computational study of the R89K mutation in Raf and its effect on Ras binding , 2008, Protein science : a publication of the Protein Society.
[24] J. Mekalanos,et al. Evidence that glutamic acid 167 is an active-site residue of Shiga-like toxin I. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[25] R Langridge,et al. Real-time color graphics in studies of molecular interactions. , 1981, Science.
[26] B. Matthews,et al. A mutant T4 lysozyme displays five different crystal conformations , 1990, Nature.
[27] B. Matthews,et al. Protein structural plasticity exemplified by insertion and deletion mutants in T4 lysozyme , 1996, Protein science : a publication of the Protein Society.
[28] D C Richardson,et al. Kinemages--simple macromolecular graphics for interactive teaching and publication. , 1994, Trends in biochemical sciences.
[29] J. Richardson,et al. Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation. , 1999, Journal of molecular biology.
[30] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[31] Determination of alpha-helix propensity within the context of a folded protein. Sites 44 and 131 in bacteriophage T4 lysozyme. , 1993, Journal of molecular biology.
[32] A. Frankel,et al. Selection and characterization of ricin toxin A-chain mutations in Saccharomyces cerevisiae , 1989, Molecular and cellular biology.
[33] B. Matthews,et al. Control of enzyme activity by an engineered disulfide bond. , 1994, Science.
[34] D. Derbyshire,et al. X-ray structure of recombinant ricin A-chain at 1.8 A resolution. , 1994, Journal of molecular biology.
[35] D C Richardson,et al. The kinemage: A tool for scientific communication , 1992, Protein science : a publication of the Protein Society.
[36] B. Matthews,et al. Thermodynamic and structural compensation in "size-switch" core repacking variants of bacteriophage T4 lysozyme. , 1996, Journal of molecular biology.
[37] B. Matthews,et al. The role of backbone flexibility in the accommodation of variants that repack the core of T4 lysozyme. , 1994, Science.
[38] A. Monzingo,et al. Structure of recombinant ricin A chain at 2.3 Å , 1993, Protein science : a publication of the Protein Society.
[39] James H. Prestegard,et al. A Transmembrane Helix Dimer: Structure and Implications , 1997, Science.
[40] M Karplus,et al. Protein sidechain conformer prediction: a test of the energy function. , 1998, Folding & design.
[41] A. Frankel,et al. Role of glutamic acid 177 of the ricin toxin A chain in enzymatic inactivation of ribosomes , 1989, Molecular and cellular biology.