Genetic association testing using the GENESIS R/Bioconductor package
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Tamar Sofer | Han Chen | Jennifer A Brody | Stephanie M Gogarten | Chaoyu Yu | Timothy A Thornton | Kenneth M Rice | Matthew P Conomos | T. Thornton | J. Brody | Han Chen | M. Conomos | T. Sofer | K. Rice | S. Gogarten | Jennifer A. Brody | Chaoyu Yu
[1] S. Redline,et al. Control for Population Structure and Relatedness for Binary Traits in Genetic Association Studies via Logistic Mixed Models. , 2016, American journal of human genetics.
[2] N. Breslow,et al. Approximate inference in generalized linear mixed models , 1993 .
[3] Bruce S Weir,et al. Model-free Estimation of Recent Genetic Relatedness. , 2016, American journal of human genetics.
[4] David Levine,et al. SeqArray—a storage‐efficient high‐performance data format for WGS variant calls , 2017, Bioinform..
[5] Xihong Lin,et al. Rare-variant association testing for sequencing data with the sequence kernel association test. , 2011, American journal of human genetics.
[6] Wei Wang,et al. Acetylome Analysis Reveals Population Differentiation of the Pacific Oyster Crassostrea gigas in Response to Heat Stress , 2020, Marine Biotechnology.
[7] Seunggeun Lee,et al. Efficient variant set mixed model association tests for continuous and binary traits in large-scale whole genome sequencing studies , 2018, bioRxiv.
[8] J. Shendure,et al. A general framework for estimating the relative pathogenicity of human genetic variants , 2014, Nature Genetics.
[9] Xihong Lin,et al. Optimal tests for rare variant effects in sequencing association studies. , 2012, Biostatistics.
[10] Timothy A Thornton,et al. Robust Inference of Population Structure for Ancestry Prediction and Correction of Stratification in the Presence of Relatedness , 2015, Genetic epidemiology.
[11] Harvey Goldstein,et al. Handbook of multilevel analysis , 2008 .
[12] Lars G Fritsche,et al. Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies , 2017, Nature Genetics.
[13] J. Berkhof,et al. Diagnostic Checks for Multilevel Models , 2008 .
[14] David Levine,et al. GWASTools: an R/Bioconductor package for quality control and analysis of genome-wide association studies , 2012, Bioinform..
[15] Robin Thompson,et al. Average information REML: An efficient algorithm for variance parameter estimation in linear mixed models , 1995 .
[16] Exploiting the diversity of tomato: the development of a phenotypically and genetically detailed germplasm collection , 2020, Horticulture Research.
[17] J. Meigs,et al. Sequence Kernel Association Test for Quantitative Traits in Family Samples , 2013, Genetic epidemiology.
[18] Kathleen F. Kerr,et al. Genetic Diversity and Association Studies in US Hispanic/Latino Populations: Applications in the Hispanic Community Health Study/Study of Latinos. , 2016, American journal of human genetics.
[19] E A Thompson,et al. Pedigree analysis for quantitative traits: variance components without matrix inversion. , 1990, Biometrics.
[20] David Levine,et al. A high-performance computing toolset for relatedness and principal component analysis of SNP data , 2012, Bioinform..
[21] T. Lumley,et al. FastSKAT: Sequence kernel association tests for very large sets of markers , 2018, Genetic epidemiology.
[22] Seunggeun Lee,et al. A Fast and Accurate Algorithm to Test for Binary Phenotypes and Its Application to PheWAS. , 2017, American journal of human genetics.