Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity
暂无分享,去创建一个
J. Grimwood | J. Schmutz | D. Rokhsar | S. Prochnik | J. Lyons | T. Setter | R. Gleadow | S. Rounsley | J. Ndunguru | P. Kulakow | M. Ferguson | I. Rabbi | C. Egesi | R. Bart | V. Lebot | G. A. Wu | E. Edsinger-Gonzales | J. Bredeson | G. Mkamilo | Cindy M. Ha | P. Nauluvula
[1] G. C. Yencho,et al. Conventional breeding, marker-assisted selection, genomic selection and inbreeding in clonally propagated crops: a case study for cassava , 2015, Theoretical and Applied Genetics.
[2] Brendan L. O’Connell,et al. Chromosome-scale shotgun assembly using an in vitro method for long-range linkage , 2015, Genome research.
[3] D. Rokhsar,et al. High-Resolution Linkage Map and Chromosome-Scale Genome Assembly for Cassava (Manihot esculenta Crantz) from 10 Populations , 2014, G3: Genes, Genomes, Genetics.
[4] Weixiong Zhang,et al. Cassava genome from a wild ancestor to cultivated varieties , 2014, Nature Communications.
[5] P. Wangsomnuk,et al. Thai elite cassava genetic diversity was fortuitously conserved through farming with different sets of varieties , 2014, Conservation Genetics.
[6] M. Gedil,et al. Genetic Mapping Using Genotyping‐by‐Sequencing in the Clonally Propagated Cassava , 2014 .
[7] Karin M. Fredrikson,et al. Complex history of admixture during citrus domestication revealed by genome analysis , 2014 .
[8] M. Gedil,et al. High-resolution mapping of resistance to cassava mosaic geminiviruses in cassava using genotyping-by-sequencing and its implications for breeding. , 2014, Virus research.
[9] Andrea Zuccolo,et al. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication , 2014, Nature Biotechnology.
[10] Tetsuya Hayashi,et al. Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads , 2014, Genome research.
[11] W. Gruissem,et al. Unlocking the potential of tropical root crop biotechnology in east Africa by establishing a genetic transformation platform for local farmer-preferred cassava cultivars , 2013, Front. Plant Sci..
[12] Heng Li. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM , 2013, 1303.3997.
[13] Fui Ling Ng,et al. Draft genome sequence of the rubber tree Hevea brasiliensis , 2013, BMC Genomics.
[14] C. Fauquet,et al. Transgenic RNA interference (RNAi)-derived field resistance to cassava brown streak disease. , 2012, Molecular plant pathology.
[15] Y. Baguma,et al. Genetic diversity among farmer-preferred cassava landraces in Uganda. , 2012 .
[16] M. Gedil,et al. Molecular Markers and Their Application to Cassava Breeding: Past, Present and Future , 2012, Tropical Plant Biology.
[17] Luis O. Duque. Cassava Drought Tolerance Mechanisms Re-Visited: Evaluation Of Drought Tolerance In Contrasting Cassava Genotypes Under Water Stressed Environments , 2012 .
[18] T. Harkins,et al. The Cassava Genome: Current Progress, Future Directions , 2012, Tropical Plant Biology.
[19] R. Naidu,et al. Cassava mosaic disease: a curse to food security in subSaharan Africa , 2011 .
[20] Robert J. Elshire,et al. A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species , 2011, PloS one.
[21] M. DePristo,et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data , 2011, Nature Genetics.
[22] M. DePristo,et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.
[23] Jean-Luc Jannink,et al. Genomic selection in plant breeding: from theory to practice. , 2010, Briefings in functional genomics.
[24] D. McKey,et al. Domestication and Diversity in Manioc (Manihot esculenta Crantz ssp. esculenta, Euphorbiaceae) , 2008, Current Anthropology.
[25] N. Nassar,et al. Wild Manihot species: botanical aspects, geographic distribution and economic value. , 2008, Genetics and molecular research : GMR.
[26] Manuel A. R. Ferreira,et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.
[27] D. Reich,et al. Population Structure and Eigenanalysis , 2006, PLoS genetics.
[28] N. Risch,et al. Estimation of individual admixture: Analytical and study design considerations , 2005, Genetic epidemiology.
[29] K. Olsen. SNPs, SSRs and inferences on cassava’s origin , 2004, Plant Molecular Biology.
[30] Paul Chavarriaga,et al. Development and application of transgenic technologies in cassava , 2004, Plant Molecular Biology.
[31] Stephen M. Mount,et al. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies. , 2003, Nucleic acids research.
[32] O. Gascuel,et al. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.
[33] N. Nassar. Cassava, Manihot esculenta Crantz, genetic resources: origin of the crop, its evolution and relationships with wild relatives. , 2002, Genetics and molecular research : GMR.
[34] M. Guerra,et al. Cytogenetics of Manihot esculenta Crantz (cassava) and eight related species. , 2002, Hereditas.
[35] M. Wilkinson. Broadening the Genetic Base of Crop Production , 2001, Heredity.
[36] Felix I. Nweke,et al. The Cassava Transformation: Africa's Best-Kept Secret , 2001 .
[37] K. Olsen,et al. Evidence on the origin of cassava: phylogeography of Manihot esculenta. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[38] M. Bonierbale,et al. AFLP assessment of genetic variability in cassava accessions (Manihot esculenta) resistant and susceptible to the cassava bacterial blight (CBB). , 1999, Genome.
[39] Burkhard Morgenstern,et al. DIALIGN2: Improvement of the segment to segment approach to multiple sequence alignment , 1999, German Conference on Bioinformatics.
[40] N. Nassar. BROADENING THE GENETIC BASE OF CASSAVA, Manihot esculenta Crantz, BY INTERSPECIFIC HYBRIDIZATION , 1989 .
[41] N. Nassar. Conservation of the genetic resources of cassava (Manihot Esculenta) Determination of wild species localities with emphasis on probable origin , 1978, Economic Botany.
[42] D. Jennings. Some evidence on the genetic structure of present-day raspberry varieties and some possible implications for further breeding , 1963, Euphytica.
[43] D. Jennings. Variation in pollen and ovule fertility in varieties of cassava, and the effect of interspecific crossing on fertility , 1963, Euphytica.
[44] N. Lutaladio,et al. Save and grow : cassava : a guide to sustainable production intensification , 2013 .
[45] I. Ingelbrecht,et al. Genetic Analysis of Selected Cassava (Manihot esculenta) Genetic Pool in Africa Assessed with Simple Sequence Repeats , 2012 .
[46] Géo Coppens D'Eeckenbrugge,et al. Origin and domestication of native Amazonian crops. , 2010 .
[47] M. Labuschagne,et al. Genetic effects of inbreeding on harvest index and root dry matter content in cassava , 2010 .
[48] S. Offei,et al. Genetic relationships among improved cassava accessions and landraces for resistance to the cassava mosaic disease , 2009 .
[49] Claude-Alain H. Roten,et al. Fast and accurate short read alignment with Burrows–Wheeler transform , 2009, Bioinform..
[50] D. Ugent,et al. Archaeological manioc (Manihot) from Coastal Peru , 2008, Economic Botany.
[51] D. Holdstock. Past, present--and future? , 2005, Medicine, conflict, and survival.
[52] Felix Nweke,et al. New challenges in the cassava transformation in Nigeria and Ghana , 2004 .
[53] Louis Levis. Epidemiology and control , 2002 .
[54] K. Olsen,et al. Microsatellite variation in cassava (Manihot esculenta, Euphorbiaceae) and its wild relatives: further evidence for a southern Amazonian origin of domestication. , 2001, American journal of botany.
[55] L. Perlemuter. [From theory to practice]. , 1997, Soins. Psychiatrie.
[56] J. Lozano. Bacterial Blight of Cassava in Colombia: Epidemiology and Control , 1974 .
[57] R. F. Nichols. Breeding cassava for virus resistance. , 1947 .