Metagenomic Analysis of Healthy and White Plague-Affected Mussismilia braziliensis Corals
暂无分享,去创建一个
Fabiano L. Thompson | Rob Edwards | Shota Nakamura | Kazuyoshi Gotoh | F. Thompson | T. Sawabe | T. Iida | Kazuyoshi Gotoh | G. Garcia | G. Gregoracci | Genivaldo G. Z. Silva | Tetsuya Iida | R. L. de Moura | Rodrigo L. Moura | Tomoo Sawabe | Pedro M. Meirelles | Gizele D. Garcia | Gustavo B. Gregoracci | Eidy de O. Santos | P. Meirelles | G. G. Silva | S. Nakamura | Eidy de O. Santos | Rob Edwards
[1] D. Kirchman. Microbial ecology of the oceans , 2008 .
[2] Aaron W. Miller,et al. A meta-analysis of 16S rRNA gene clone libraries from the polymicrobial black band disease of corals. , 2011, FEMS microbiology ecology.
[3] J. Prosser. Replicate or lie. , 2010, Environmental microbiology.
[4] J. Verreth,et al. The Biology and Economics of Coral Growth , 2011, Marine Biotechnology.
[5] L. Michaud,et al. Marine Bacterioplankton Diversity and Community Composition in an Antarctic Coastal Environment , 2011, Microbial Ecology.
[6] C. Silveira,et al. Archaea, Bacteria, and Algal Plastids Associated with the Reef-Building Corals Siderastrea stellata and Mussismilia hispida from Búzios, South Atlantic Ocean, Brazil , 2010, Microbial Ecology.
[7] M. Freitas,et al. Feeding ecology of Lutjanus analis (Teleostei: Lutjanidae) from Abrolhos Bank, Eastern Brazil , 2011 .
[8] J. Frias-Lopez,et al. Bacterial Community Associated with Black Band Disease in Corals , 2004, Applied and Environmental Microbiology.
[9] Florent E. Angly,et al. Microbial Ecology of Four Coral Atolls in the Northern Line Islands , 2008, PloS one.
[10] T. Ridgway,et al. Bacterial Communities of Two Ubiquitous Great Barrier Reef Corals Reveals Both Site- and Species-Specificity of Common Bacterial Associates , 2010, PloS one.
[11] Hannah M. Wexler,et al. Bacteroides: the Good, the Bad, and the Nitty-Gritty , 2007, Clinical Microbiology Reviews.
[12] J. Porter,et al. Disease and immunity in Caribbean and Indo-Pacific zooxanthellate corals , 2004 .
[13] Senjie Lin. THE SMALLEST DINOFLAGELLATE GENOME IS YET TO BE FOUND: A COMMENT ON LAJEUNESSE ET AL. “SYMBIODINIUM (PYRRHOPHYTA) GENOME SIZES (DNA CONTENT) ARE SMALLEST AMONG DINOFLAGELLATES” 1 , 2006 .
[14] C. Arévalo-Ferro,et al. Shifts in bacterial communities of two caribbean reef-building coral species affected by white plague disease , 2011, The ISME Journal.
[15] J. Borneman,et al. The Role of Coral-Associated Bacterial Communities in Australian Subtropical White Syndrome of Turbinaria mesenterina , 2012, PloS one.
[16] F. Thompson,et al. Genomic and proteomic analyses of the coral pathogen Vibrio coralliilyticus reveal a diverse virulence repertoire , 2011, The ISME Journal.
[17] Glenn De'ath,et al. Declining Coral Calcification on the Great Barrier Reef , 2009, Science.
[18] Z. M. Leão,et al. Corals and coral reefs of Brazil , 2003 .
[19] T. Eickbush,et al. The diversity of retrotransposons and the properties of their reverse transcriptases. , 2008, Virus research.
[20] O. Pantos,et al. The bacterial ecology of a plague-like disease affecting the Caribbean coral Montastrea annularis. , 2003, Environmental microbiology.
[21] J. Kawai,et al. The regulated retrotransposon transcriptome of mammalian cells , 2009, Nature Genetics.
[22] B. Willis,et al. Diversities of coral-associated bacteria differ with location, but not species, for three acroporid corals on the Great Barrier Reef. , 2009, FEMS microbiology ecology.
[23] Les Kaufman,et al. Diseases leading to accelerated decline of reef corals in the largest South Atlantic reef complex (Abrolhos Bank, eastern Brazil). , 2008, Marine pollution bulletin.
[24] R. Britten,et al. Retroviral-like element in a marine invertebrate. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[25] M. Liles,et al. Bacterial Associates of Two Caribbean Coral Species Reveal Species-Specific Distribution and Geographic Variability , 2012, Applied and Environmental Microbiology.
[26] D. Willner,et al. Metagenomic signatures of 86 microbial and viral metagenomes. , 2009, Environmental microbiology.
[27] S. Bonatto,et al. Microsatellite genetic characterization of the humpback whale (Megaptera novaeangliae) breeding ground off Brazil (breeding stock A). , 2010, The Journal of heredity.
[28] S. Schuster,et al. Integrative analysis of environmental sequences using MEGAN4. , 2011, Genome research.
[29] B. Willis,et al. Coral Pathogens Identified for White Syndrome (WS) Epizootics in the Indo-Pacific , 2008, PloS one.
[30] Andreas Wilke,et al. phylogenetic and functional analysis of metagenomes , 2022 .
[31] Forest Rohwer,et al. Metagenomic analysis of the microbial community associated with the coral Porites astreoides. , 2007, Environmental microbiology.
[32] Cédric Feschotte,et al. Plant transposable elements: where genetics meets genomics , 2002, Nature Reviews Genetics.
[33] N. Knowlton,et al. Genetic evidence for a protozoan (phylum Apicomplexa) associated with corals of the Montastraea annularis species complex , 2002, Coral Reefs.
[34] Tadashi Maruyama,et al. Octocoral Chemical Signaling Selects and Controls Dinoflagellate Symbionts , 2004, The Biological Bulletin.
[35] Gene W. Yeo,et al. L1 retrotransposition in human neural progenitor cells , 2009, Nature.
[36] K. Barott,et al. Global analysis of plastid diversity reveals apicomplexan-related lineages in coral reefs , 2012, Current Biology.
[37] Shawn P. Driscoll,et al. ES cell potency fluctuates with endogenous retrovirus activity , 2012, Nature.
[38] B. Willis,et al. Metagenomic analysis of the coral holobiont during a natural bleaching event on the Great Barrier Reef. , 2011, Environmental microbiology reports.
[39] L. Kaufman,et al. Endolithic fungi in reef-building corals (Order : Scleractinia) are common, cosmopolitan, and potentially pathogenic. , 2000, The Biological bulletin.
[40] T. Oliver,et al. Coral-associated marine fungi form novel lineages and heterogeneous assemblages , 2011, The ISME Journal.
[41] D. Kline,et al. White Band Disease (type I) of Endangered Caribbean Acroporid Corals is Caused by Pathogenic Bacteria , 2011, Scientific reports.
[42] James R. Knight,et al. Genome sequencing in microfabricated high-density picolitre reactors , 2005, Nature.
[43] Barbara A. Bailey,et al. Assessing Coral Reefs on a Pacific-Wide Scale Using the Microbialization Score , 2012, PloS one.
[44] R. V. Thurber,et al. Viruses of reef-building scleractinian corals , 2011 .
[45] G. Hajishengallis,et al. The keystone-pathogen hypothesis , 2012, Nature Reviews Microbiology.
[46] Rodolfo Paranhos,et al. Abrolhos Bank Reef Health Evaluated by Means of Water Quality, Microbial Diversity, Benthic Cover, and Fish Biomass Data , 2012, PloS one.
[47] F. Thompson,et al. Pathogenicity of vibrios to rainbow trout (Oncorhynchus mykiss, Walbaum) and Artemia nauplii. , 2005, Environmental microbiology.
[48] A. Grant,et al. Long-Term Region-Wide Declines in Caribbean Corals , 2003, Science.
[49] A. McPherson,et al. Atomic Force Microscopy in Imaging of Viruses and Virus-Infected Cells , 2011, Microbiology and Molecular Reviews.
[50] Erik Kristiansson,et al. ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes , 2009, Bioinform..
[51] M. Sweet,et al. Bacterial assemblages shifts from healthy to yellow band disease states in the dominant reef coral Montastraea faveolata. , 2013, Environmental microbiology reports.
[52] B. Willis,et al. Vibrio Zinc-Metalloprotease Causes Photoinactivation of Coral Endosymbionts and Coral Tissue Lesions , 2009, PloS one.
[53] J. Pandolfi,et al. Projecting Coral Reef Futures Under Global Warming and Ocean Acidification , 2011, Science.
[54] E. Rosenberg,et al. Temperature-Regulated Bleaching and Lysis of the Coral Pocillopora damicornis by the Novel Pathogen Vibrio coralliilyticus , 2003, Applied and Environmental Microbiology.
[55] Joshua S Madin,et al. Ecological consequences of major hydrodynamic disturbances on coral reefs , 2006, Nature.
[56] Todd C. LaJeunesse,et al. SYMBIODINIUM (PYRRHOPHYTA) GENOME SIZES (DNA CONTENT) ARE SMALLEST AMONG DINOFLAGELLATES 1 , 2005 .
[57] R. Poulter,et al. A retrotransposon family from the pufferfish (fugu) Fugu rubripes. , 1998, Gene.
[58] Shinichi Sunagawa,et al. Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata , 2009, The ISME Journal.
[59] S. Wooldridge. Is the coral‐algae symbiosis really ‘mutually beneficial’ for the partners? , 2010, BioEssays : news and reviews in molecular, cellular and developmental biology.
[60] A. Pélisson,et al. Retroviruses in invertebrates: the gypsy retrotransposon is apparently an infectious retrovirus of Drosophila melanogaster. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[61] M. Breitbart,et al. Widespread association of a Rickettsiales-like bacterium with reef-building corals. , 2004, Environmental microbiology.
[62] O. Pybus,et al. Macroevolution of Complex Retroviruses , 2009, Science.
[63] F. Thompson,et al. Bacterial Community Associated with Healthy and Diseased Reef Coral Mussismilia hispida from Eastern Brazil , 2010, Microbial Ecology.
[64] Y. Loya,et al. Bacterial infection and coral bleaching , 1996, Nature.
[65] N. Siboni,et al. Global distribution and diversity of coral-associated Archaea and their possible role in the coral holobiont nitrogen cycle. , 2008, Environmental microbiology.
[66] A. Fujiyama,et al. Using the Acropora digitifera genome to understand coral responses to environmental change , 2011, Nature.
[67] M. Meselson,et al. A deep-branching clade of retrovirus-like retrotransposons in bdelloid rotifers. , 2007, Gene.
[68] F. Thompson,et al. Structuring of Bacterioplankton Diversity in a Large Tropical Bay , 2012, PloS one.
[69] F. Thompson,et al. Bacterial diversity associated with the Brazilian endemic reef coral Mussismilia braziliensis , 2009, Journal of applied microbiology.
[70] B. Wilson,et al. Bacterial communities associated with healthy and Acropora white syndrome-affected corals from American Samoa. , 2012, FEMS microbiology ecology.
[71] J. Sambrook,et al. Molecular Cloning: A Laboratory Manual , 2001 .
[72] Robert G. Beiko,et al. Identifying biologically relevant differences between metagenomic communities , 2010, Bioinform..
[73] J. Volff. Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes , 2006, BioEssays : news and reviews in molecular, cellular and developmental biology.
[74] Z. M. Leão,et al. A relic coral fauna threatened by global changes and human activities, Eastern Brazil. , 2005, Marine pollution bulletin.
[75] G. De’ath,et al. The 27–year decline of coral cover on the Great Barrier Reef and its causes , 2012, Proceedings of the National Academy of Sciences.