The histone demethylase JMJD2B regulates endothelial-to-mesenchymal transition

Significance Here we show that the histone demethylase JMJD2B is induced in endothelial cells by EndMT provoking stimuli and thereby contributes to the acquirement of a mesenchymal/smooth muscle phenotype. Silencing of JMJD2B inhibited EndMT in vitro and reduced the induction of EndMT after myocardial infarction in vivo. Inhibition of JMJD2B prevents the demethylation of repressive trimethylated histone H3 at lysine 9 (H3K9me3) at promoters of mesenchymal and EndMT-controlling genes, thereby reducing EndMT. Together, our study reports a crucial role for JMJD2B in controlling histone modifications during the transition of endothelial cells toward a mesenchymal phenotype. Endothelial cells play an important role in maintenance of the vascular system and the repair after injury. Under proinflammatory conditions, endothelial cells can acquire a mesenchymal phenotype by a process named endothelial-to-mesenchymal transition (EndMT), which affects the functional properties of endothelial cells. Here, we investigated the epigenetic control of EndMT. We show that the histone demethylase JMJD2B is induced by EndMT-promoting, proinflammatory, and hypoxic conditions. Silencing of JMJD2B reduced TGF-β2-induced expression of mesenchymal genes, prevented the alterations in endothelial morphology and impaired endothelial barrier function. Endothelial-specific deletion of JMJD2B in vivo confirmed a reduction of EndMT after myocardial infarction. EndMT did not affect global H3K9me3 levels but induced a site-specific reduction of repressive H3K9me3 marks at promoters of mesenchymal genes, such as Calponin (CNN1), and genes involved in TGF-β signaling, such as AKT Serine/Threonine Kinase 3 (AKT3) and Sulfatase 1 (SULF1). Silencing of JMJD2B prevented the EndMT-induced reduction of H3K9me3 marks at these promotors and further repressed these EndMT-related genes. Our study reveals that endothelial identity and function is critically controlled by the histone demethylase JMJD2B, which is induced by EndMT-promoting, proinflammatory, and hypoxic conditions, and supports the acquirement of a mesenchymal phenotype.

[1]  J. Kovacic,et al.  Endothelial to Mesenchymal Transition in Cardiovascular Disease: JACC State-of-the-Art Review. , 2019, Journal of the American College of Cardiology.

[2]  Christoph Hafemeister,et al.  Comprehensive integration of single cell data , 2018, bioRxiv.

[3]  J. Molkentin,et al.  Specialized fibroblast differentiated states underlie scar formation in the infarcted mouse heart , 2018, The Journal of clinical investigation.

[4]  Paul Hoffman,et al.  Integrating single-cell transcriptomic data across different conditions, technologies, and species , 2018, Nature Biotechnology.

[5]  Q. Wells,et al.  A Metabolic Basis for Endothelial-to-Mesenchymal Transition. , 2018, Molecular cell.

[6]  G. F. Ruda,et al.  Assessing histone demethylase inhibitors in cells: lessons learned , 2017, Epigenetics & Chromatin.

[7]  E. Dejana,et al.  The molecular basis of endothelial cell plasticity , 2017, Nature Communications.

[8]  Zhenran Wang,et al.  Aberrant JMJD3 Expression Upregulates Slug to Promote Migration, Invasion, and Stem Cell-Like Behaviors in Hepatocellular Carcinoma. , 2016, Cancer research.

[9]  M. Longaker,et al.  Local and Circulating Endothelial Cells Undergo Endothelial to Mesenchymal Transition (EndMT) in Response to Musculoskeletal Injury , 2016, Scientific Reports.

[10]  Grace X. Y. Zheng,et al.  Massively parallel digital transcriptional profiling of single cells , 2016, Nature Communications.

[11]  S. Dimmeler,et al.  JMJD8 Regulates Angiogenic Sprouting and Cellular Metabolism by Interacting With Pyruvate Kinase M2 in Endothelial Cells , 2016, Arteriosclerosis, thrombosis, and vascular biology.

[12]  V. Fuster,et al.  Endothelial to mesenchymal transition is common in atherosclerotic lesions and is associated with plaque instability , 2016, Nature Communications.

[13]  Howard H. Yang,et al.  The epigenetic modifier JMJD6 is amplified in mammary tumors and cooperates with c-Myc to enhance cellular transformation, tumor progression, and metastasis , 2016, Clinical Epigenetics.

[14]  M. Zeisberg,et al.  Hypoxia‐induced endothelial–mesenchymal transition is associated with RASAL1 promoter hypermethylation in human coronary endothelial cells , 2016, FEBS letters.

[15]  G. Dhoot,et al.  SULF1/SULF2 reactivation during liver damage and tumour growth , 2016, Histochemistry and Cell Biology.

[16]  S. Alahari,et al.  Regulation of epithelial-mesenchymal transition through epigenetic and post-translational modifications , 2016, Molecular Cancer.

[17]  E. Oki,et al.  The Prognostic Significance of Histone Lysine Demethylase JMJD3/KDM6B in Colorectal Cancer , 2016, Annals of Surgical Oncology.

[18]  T. V. van Kooten,et al.  Endothelial-to-mesenchymal transition contributes to fibro-proliferative vascular disease and is modulated by fluid shear stress. , 2015, Cardiovascular research.

[19]  M. Schwartz,et al.  Endothelial-to-mesenchymal transition drives atherosclerosis progression. , 2015, The Journal of clinical investigation.

[20]  A. Zeiher,et al.  Identification and Characterization of Hypoxia-Regulated Endothelial Circular RNA. , 2015, Circulation research.

[21]  Zhenguo Liu,et al.  Elevated JMJD1A is a novel predictor for prognosis and a potential therapeutic target for gastric cancer. , 2015, International journal of clinical and experimental pathology.

[22]  M. Harmsen,et al.  Enhancer of zeste homolog-2 (EZH2) methyltransferase regulates transgelin/smooth muscle-22α expression in endothelial cells in response to interleukin-1β and transforming growth factor-β2. , 2015, Cellular signalling.

[23]  Nathan C. Sheffield,et al.  ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors , 2015, Nature Methods.

[24]  Qiang Li,et al.  KDM6B induces epithelial-mesenchymal transition and enhances clear cell renal cell carcinoma metastasis through the activation of SLUG. , 2015, International journal of clinical and experimental pathology.

[25]  M. Zeisberg,et al.  Snail Is a Direct Target of Hypoxia-inducible Factor 1α (HIF1α) in Hypoxia-induced Endothelial to Mesenchymal Transition of Human Coronary Endothelial Cells* , 2015, The Journal of Biological Chemistry.

[26]  Hae-June Lee,et al.  A Hypoxia-Induced Vascular Endothelial-to-Mesenchymal Transition in Development of Radiation-Induced Pulmonary Fibrosis , 2015, Clinical Cancer Research.

[27]  C. Moser,et al.  Activation of the transforming growth factor‐β/SMAD transcriptional pathway underlies a novel tumor‐promoting role of sulfatase 1 in hepatocellular carcinoma , 2015, Hepatology.

[28]  X. Jiao,et al.  JARID1B promotes metastasis and epithelial-mesenchymal transition via PTEN/AKT signaling in hepatocellular carcinoma cells , 2015, Oncotarget.

[29]  Ahmed Mahfouz,et al.  Visualizing the spatial gene expression organization in the brain through non-linear similarity embeddings. , 2015, Methods.

[30]  A. Zeiher,et al.  Laminar Shear Stress Inhibits Endothelial Cell Metabolism via KLF2-Mediated Repression of PFKFB3 , 2015, Arteriosclerosis, thrombosis, and vascular biology.

[31]  Gretchen J. Mahler,et al.  Effects of shear stress pattern and magnitude on mesenchymal transformation and invasion of aortic valve endothelial cells , 2014, Biotechnology and bioengineering.

[32]  G. Tellides,et al.  Fibroblast growth factor receptor 1 is a key inhibitor of TGFβ signaling in the endothelium , 2014, Science Signaling.

[33]  J. Baker,et al.  JMJD5 Regulates Cell Cycle and Pluripotency in Human Embryonic Stem Cells , 2014, Stem cells.

[34]  S. Dimmeler,et al.  Long Noncoding RNA MALAT1 Regulates Endothelial Cell Function and Vessel Growth , 2014, Circulation Research.

[35]  B. Zhou,et al.  Epigenetic regulation of EMT: the Snail story. , 2014, Current pharmaceutical design.

[36]  Samy Lamouille,et al.  Molecular mechanisms of epithelial–mesenchymal transition , 2014, Nature Reviews Molecular Cell Biology.

[37]  Kristian Helin,et al.  The Demethylase JMJD2C Localizes to H3K4me3-Positive Transcription Start Sites and Is Dispensable for Embryonic Development , 2014, Molecular and Cellular Biology.

[38]  Li Zhao,et al.  JMJD2B Promotes Epithelial–Mesenchymal Transition by Cooperating with β-Catenin and Enhances Gastric Cancer Metastasis , 2013, Clinical Cancer Research.

[39]  G. Wang,et al.  Histone Deacetylase 3 Unconventional Splicing Mediates Endothelial-to-mesenchymal Transition through Transforming Growth Factor β2* , 2013, The Journal of Biological Chemistry.

[40]  T. Dierks,et al.  The SULFs, Extracellular Sulfatases for Heparan Sulfate, Promote the Migration of Corneal Epithelial Cells during Wound Repair , 2013, PloS one.

[41]  Minoru Terashima,et al.  KDM5B histone demethylase controls epithelial-mesenchymal transition of cancer cells by regulating the expression of the microRNA-200 family , 2013, Cell cycle.

[42]  D. Koya,et al.  Role of the endothelial-to-mesenchymal transition in renal fibrosis of chronic kidney disease , 2013, Clinical and Experimental Nephrology.

[43]  Cun-Yu Wang,et al.  Histone Demethylase KDM6B Promotes Epithelial-Mesenchymal Transition* , 2012, The Journal of Biological Chemistry.

[44]  Daniel G. Anderson,et al.  FGF regulates TGF-β signaling and endothelial-to-mesenchymal transition via control of let-7 miRNA expression. , 2012, Cell reports.

[45]  Y. Taniyama,et al.  Hepatocyte Growth Factor Reduces Cardiac Fibrosis by Inhibiting Endothelial-Mesenchymal Transition , 2012, Hypertension.

[46]  V. Fuster,et al.  Epithelial-to-Mesenchymal and Endothelial-to-Mesenchymal Transition: From Cardiovascular Development to Disease , 2012, Circulation.

[47]  Minoru Terashima,et al.  Jmjd5, an H3K36me2 histone demethylase, modulates embryonic cell proliferation through the regulation of Cdkn1a expression , 2012, Development.

[48]  Raghu Kalluri,et al.  Transforming growth factor-β2 promotes Snail-mediated endothelial-mesenchymal transition through convergence of Smad-dependent and Smad-independent signalling. , 2011, The Biochemical journal.

[49]  Jing Liang,et al.  Histone demethylase JMJD2B coordinates H3K4/H3K9 methylation and promotes hormonally responsive breast carcinogenesis , 2011, Proceedings of the National Academy of Sciences.

[50]  T. Mak,et al.  Histone Demethylase JMJD2B Functions as a Co-Factor of Estrogen Receptor in Breast Cancer Proliferation and Mammary Gland Development , 2011, PloS one.

[51]  A. Lengeling,et al.  Jumonji domain-containing protein 6 (Jmjd6) is required for angiogenic sprouting and regulates splicing of VEGF-receptor 1 , 2011, Proceedings of the National Academy of Sciences.

[52]  A. Ghosh,et al.  Genetic Deficiency of Plasminogen Activator Inhibitor-1 Promotes Cardiac Fibrosis in Aged Mice: Involvement of Constitutive Transforming Growth Factor-&bgr; Signaling and Endothelial-to-Mesenchymal Transition , 2010, Circulation.

[53]  K. Hirata,et al.  Endothelial Cell–Derived Endothelin-1 Promotes Cardiac Fibrosis in Diabetic Hearts Through Stimulation of Endothelial-to-Mesenchymal Transition , 2010, Circulation.

[54]  C. Glass,et al.  Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. , 2010, Molecular cell.

[55]  Cole Trapnell,et al.  Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.

[56]  Arend Sidow,et al.  Jarid2/Jumonji Coordinates Control of PRC2 Enzymatic Activity and Target Gene Occupancy in Pluripotent Cells , 2009, Cell.

[57]  Thomas Braun,et al.  Exon Array Analyzer: a web interface for Affymetrix exon array analysis , 2009, Bioinform..

[58]  David Harrison,et al.  Partial carotid ligation is a model of acutely induced disturbed flow, leading to rapid endothelial dysfunction and atherosclerosis. , 2009, American journal of physiology. Heart and circulatory physiology.

[59]  T. Dierks,et al.  Characterization of the Human Sulfatase Sulf1 and Its High Affinity Heparin/Heparan Sulfate Interaction Domain* , 2009, The Journal of Biological Chemistry.

[60]  Jens Vilstrup Johansen,et al.  The Histone Demethylases JMJD1A and JMJD2B Are Transcriptional Targets of Hypoxia-inducible Factor HIF* , 2008, Journal of Biological Chemistry.

[61]  R. Kalluri,et al.  The role of endothelial-to-mesenchymal transition in cancer progression , 2008, British Journal of Cancer.

[62]  Dawn R. Chin,et al.  Transforming Growth Factor-β1 Induces Heparan Sulfate 6-O-Endosulfatase 1 Expression in Vitro and in Vivo* , 2008, Journal of Biological Chemistry.

[63]  Xueli Yuan,et al.  Endothelial-to-mesenchymal transition contributes to cardiac fibrosis , 2007, Nature Medicine.

[64]  Karl Mechtler,et al.  Jmjd2b antagonizes H3K9 trimethylation at pericentric heterochromatin in mammalian cells. , 2006, Genes & development.

[65]  H. Erdjument-Bromage,et al.  Histone demethylation by a family of JmjC domain-containing proteins , 2006, Nature.

[66]  Z. Werb,et al.  HSulf-2, an extracellular endoglucosamine-6-sulfatase, selectively mobilizes heparin-bound growth factors and chemokines: effects on VEGF, FGF-1, and SDF-1 , 2006, BMC Biochemistry.

[67]  W. Wahli,et al.  Dosage-Dependent Effects of Akt1/Protein Kinase Bα (PKBα) and Akt3/PKBγ on Thymus, Skin, and Cardiovascular and Nervous System Development in Mice , 2005, Molecular and Cellular Biology.

[68]  E. Dejana,et al.  -Catenin is required for endothelial-mesenchymal transformation during heart cushion development in the mouse , 2004 .

[69]  D. Kessler,et al.  QSulf1, a heparan sulfate 6-O-endosulfatase, inhibits fibroblast growth factor signaling in mesoderm induction and angiogenesis. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[70]  Alfonso Bellacosa,et al.  The protein kinase Akt induces epithelial mesenchymal transition and promotes enhanced motility and invasiveness of squamous cell carcinoma lines. , 2003, Cancer research.

[71]  H. Nakato,et al.  Heparan sulfate fine structure and specificity of proteoglycan functions. , 2002, Biochimica et biophysica acta.

[72]  J. Esko,et al.  Molecular diversity of heparan sulfate. , 2001, The Journal of clinical investigation.

[73]  H. Moses,et al.  Phosphatidylinositol 3-Kinase Function Is Required for Transforming Growth Factor β-mediated Epithelial to Mesenchymal Transition and Cell Migration* , 2000, The Journal of Biological Chemistry.

[74]  R R Markwald,et al.  Embryonic endothelial cells transdifferentiate into mesenchymal cells expressing smooth muscle actins in vivo and in vitro. , 1997, Circulation research.

[75]  T. Allen,et al.  Transforming growth factor beta 1 promotes the differentiation of endothelial cells into smooth muscle-like cells in vitro. , 1992, Journal of cell science.

[76]  B. Fischer Lessons Learned. , 2016, Schizophrenia bulletin.

[77]  C. Farquharson,et al.  Expression of Sulf1 and Sulf2 in cartilage, bone and endochondral fracture healing , 2015, Histochemistry and Cell Biology.

[78]  Thomas R. Gingeras,et al.  STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..

[79]  Shaorong Gao,et al.  The Histone Demethylase JMJD2C Is Stage-Specifically Expressed in Preimplantation Mouse Embryos and Is Required for Embryonic Development1 , 2010, Biology of reproduction.

[80]  E. A. Zambrano,et al.  Endothelial-mesenchymal transition occurs during embryonic pulmonary artery development. , 2005, Endothelium : journal of endothelial cell research.

[81]  W. Wahli,et al.  Dosage-dependent effects of Akt1/protein kinase Balpha (PKBalpha) and Akt3/PKBgamma on thymus, skin, and cardiovascular and nervous system development in mice. , 2005, Molecular and cellular biology.