Conformational Changes in BID, a Pro-apoptotic BCL-2 Family Member, upon Membrane Binding

The BCL-2 family proteins constitute a critical control point in apoptosis. BCL-2 family proteins display structural homology to channel-forming bacterial toxins, such as colicins, transmembrane domain of diphtheria toxin, and the N-terminal domain of δ-endotoxin. By analogy, it has been hypothesized the BCL-2 family proteins would unfold and insert into the lipid bilayer upon membrane association. We applied the site-directed spin labeling method of electron paramagnetic resonance spectroscopy to the pro-apoptotic member BID. Here we show that helices 6-8 maintain an α-helical conformation in membranes with a lipid composition resembling mitochondrial outer membrane contact sites. However, unlike colicins and the transmembrane domain of diphtheria toxin, these helices of BID are bound to the lipid bilayer without adopting a transmembrane orientation. Our study presents a more detailed model for the reorganization of the structure of tBID on membranes.

[1]  H. Yamaguchi,et al.  Lipidic Pore Formation by the Concerted Action of Proapoptotic BAX and tBID* , 2004, Journal of Biological Chemistry.

[2]  John Calvin Reed,et al.  Conformation of Membrane-associated Proapoptotic tBid* , 2004, Journal of Biological Chemistry.

[3]  Yongge Zhao,et al.  Bid-cardiolipin interaction at mitochondrial contact site contributes to mitochondrial cristae reorganization and cytochrome C release. , 2004, Molecular biology of the cell.

[4]  John Calvin Reed,et al.  Structural studies of apoptosis and ion transport regulatory proteins in membranes , 2004, Magnetic resonance in chemistry : MRC.

[5]  S. Korsmeyer,et al.  Cell Death Critical Control Points , 2004, Cell.

[6]  I. Cristea,et al.  Proapoptotic Bid binds to monolysocardiolipin, a new molecular connection between mitochondrial membranes and cell death , 2003, Cell Death and Differentiation.

[7]  B. Oh,et al.  Unique structural features of a BCL-2 family protein CED-9 and biophysical characterization of CED-9/EGL-1 interactions , 2003, Cell Death and Differentiation.

[8]  Suzanne Cory,et al.  The Bcl-2 family: roles in cell survival and oncogenesis , 2003, Oncogene.

[9]  Jerry M. Adams,et al.  Ways of dying: multiple pathways to apoptosis. , 2003, Genes & development.

[10]  A. Petros,et al.  Solution structure of the BHRF1 protein from Epstein-Barr virus, a homolog of human Bcl-2. , 2003, Journal of molecular biology.

[11]  P. Marrack,et al.  The structure of a Bcl-xL/Bim fragment complex: implications for Bim function. , 2003, Immunity.

[12]  S. Korsmeyer,et al.  VDAC2 Inhibits BAK Activation and Mitochondrial Apoptosis , 2003, Science.

[13]  K. Gehring,et al.  Solution Structure of Human BCL-w , 2003, Journal of Biological Chemistry.

[14]  J. Wyche,et al.  Helix 6 of tBid is necessary but not sufficient for mitochondrial binding activity , 2003, Apoptosis.

[15]  S. Korsmeyer,et al.  Apoptosis in the development and maintenance of the immune system , 2003, Nature Immunology.

[16]  M. Lackmann,et al.  The structure of Bcl‐w reveals a role for the C‐terminal residues in modulating biological activity , 2003, The EMBO journal.

[17]  Mason R. Mackey,et al.  Bid, Bax, and Lipids Cooperate to Form Supramolecular Openings in the Outer Mitochondrial Membrane , 2002, Cell.

[18]  S. Zakharov,et al.  Colicin crystal structures: pathways and mechanisms for colicin insertion into membranes. , 2002, Biochimica et biophysica acta.

[19]  M. Degli Esposti,et al.  The roles of Bid , 2002, Apoptosis.

[20]  S. Korsmeyer,et al.  Distinct BH3 domains either sensitize or activate mitochondrial apoptosis, serving as prototype cancer therapeutics. , 2002, Cancer cell.

[21]  Linda Columbus,et al.  A new spin on protein dynamics. , 2002, Trends in biochemical sciences.

[22]  A. Petros,et al.  Solution structure of a Bcl-2 homolog from Kaposi sarcoma virus , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[23]  M. Esposti Lipids, cardiolipin and apoptosis: a greasy licence to kill , 2002, Cell Death and Differentiation.

[24]  K. Hideg,et al.  Estimation of inter-residue distances in spin labeled proteins at physiological temperatures: experimental strategies and practical limitations. , 2001, Biochemistry.

[25]  Michael Lutter,et al.  The pro-apoptotic Bcl-2 family member tBid localizes to mitochondrial contact sites , 2001, BMC Cell Biology.

[26]  J. Erler,et al.  Bid, a Widely Expressed Proapoptotic Protein of the Bcl-2 Family, Displays Lipid Transfer Activity , 2001, Molecular and Cellular Biology.

[27]  S. Korsmeyer,et al.  BCL-2, BCL-X(L) sequester BH3 domain-only molecules preventing BAX- and BAK-mediated mitochondrial apoptosis. , 2001, Molecular cell.

[28]  A. Petros,et al.  Solution structure of the antiapoptotic protein bcl-2 , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[29]  S. Korsmeyer,et al.  Pro-apoptotic cascade activates BID, which oligomerizes BAK or BAX into pores that result in the release of cytochrome c , 2000, Cell Death and Differentiation.

[30]  S. Korsmeyer,et al.  Posttranslational N-myristoylation of BID as a molecular switch for targeting mitochondria and apoptosis. , 2000, Science.

[31]  Nico Tjandra,et al.  Structure of Bax Coregulation of Dimer Formation and Intracellular Localization , 2000, Cell.

[32]  Xu Luo,et al.  Cardiolipin provides specificity for targeting of tBid to mitochondria , 2000, Nature Cell Biology.

[33]  David S. Cafiso,et al.  Identifying conformational changes with site-directed spin labeling , 2000, Nature Structural Biology.

[34]  V. Mootha,et al.  tBID, a membrane-targeted death ligand, oligomerizes BAK to release cytochrome c. , 2000, Genes & development.

[35]  Grzegorz Kudla,et al.  The Destabilization of Lipid Membranes Induced by the C-terminal Fragment of Caspase 8-cleaved Bid Is Inhibited by the N-terminal Fragment* , 2000, The Journal of Biological Chemistry.

[36]  K. J. Oh,et al.  Crystal structures of spin labeled T4 lysozyme mutants: implications for the interpretation of EPR spectra in terms of structure. , 2000, Biochemistry.

[37]  J. Martinou,et al.  Bid Induces the Oligomerization and Insertion of Bax into the Outer Mitochondrial Membrane , 2000, Molecular and Cellular Biology.

[38]  K. J. Oh,et al.  Conformation of the diphtheria toxin T domain in membranes: a site-directed spin-labeling study of the TH8 helix and TL5 loop. , 1999, Biochemistry.

[39]  J C Reed,et al.  Ion Channel Activity of the BH3 Only Bcl-2 Family Member, BID* , 1999, The Journal of Biological Chemistry.

[40]  K. J. Oh,et al.  Translocation of the catalytic domain of diphtheria toxin across planar phospholipid bilayers by its own T domain. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[41]  S. Korsmeyer,et al.  Solution Structure of the Proapoptotic Molecule BID A Structural Basis for Apoptotic Agonists and Antagonists , 1999, Cell.

[42]  Junying Yuan,et al.  Solution Structure of BID, an Intracellular Amplifier of Apoptotic Signaling , 1999, Cell.

[43]  S. Korsmeyer,et al.  Caspase Cleaved BID Targets Mitochondria and Is Required for Cytochrome c Release, while BCL-XL Prevents This Release but Not Tumor Necrosis Factor-R1/Fas Death* , 1999, The Journal of Biological Chemistry.

[44]  Y. Shai,et al.  The structure and organization within the membrane of the helices composing the pore-forming domain of Bacillus thuringiensis delta-endotoxin are consistent with an "umbrella-like" structure of the pore. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[45]  W. Hubbell,et al.  Recent advances in site-directed spin labeling of proteins. , 1998, Current opinion in structural biology.

[46]  J. Ren,et al.  Identifying Transmembrane States and Defining the Membrane Insertion Boundaries of Hydrophobic Helices in Membrane-inserted Diphtheria Toxin T Domain* , 1998, The Journal of Biological Chemistry.

[47]  Xiaodong Wang,et al.  Bid, a Bcl2 Interacting Protein, Mediates Cytochrome c Release from Mitochondria in Response to Activation of Cell Surface Death Receptors , 1998, Cell.

[48]  S. Korsmeyer,et al.  Enhanced Oxidative Stress and Altered Antioxidants in Brains of Bcl‐2‐Deficient Mice , 1998, Journal of neurochemistry.

[49]  N. Kunishima,et al.  Crystal Structure of Rat Bcl-xL , 1997, The Journal of Biological Chemistry.

[50]  Shahrooz Rabizadeh,et al.  Establishment of a Cell-Free System of Neuronal Apoptosis: Comparison of Premitochondrial, Mitochondrial, and Postmitochondrial Phases , 1997, The Journal of Neuroscience.

[51]  Xiaodong Wang,et al.  DFF, a Heterodimeric Protein That Functions Downstream of Caspase-3 to Trigger DNA Fragmentation during Apoptosis , 1997, Cell.

[52]  Y. Shin,et al.  The membrane topology of the fusion peptide region of influenza hemagglutinin determined by spin-labeling EPR. , 1997, Journal of molecular biology.

[53]  R. Meadows,et al.  Structure of Bcl-xL-Bak Peptide Complex: Recognition Between Regulators of Apoptosis , 1997, Science.

[54]  C. Milliman,et al.  BID: a novel BH3 domain-only death agonist. , 1996, Genes & development.

[55]  K. Hideg,et al.  Organization of Diphtheria Toxin T Domain in Bilayers: A Site-Directed Spin Labeling Study , 1996, Science.

[56]  C. Altenbach,et al.  Watching proteins move using site-directed spin labeling. , 1996, Structure.

[57]  R. Meadows,et al.  X-ray and NMR structure of human Bcl-xL, an inhibitor of programmed cell death , 1996, Nature.

[58]  Y. Shin,et al.  Determination of the distance between two spin labels attached to a macromolecule. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[59]  H. Khorana,et al.  Mapping light-dependent structural changes in the cytoplasmic loop connecting helices C and D in rhodopsin: a site-directed spin labeling study. , 1995, Biochemistry.

[60]  H. Khorana,et al.  A collision gradient method to determine the immersion depth of nitroxides in lipid bilayers: application to spin-labeled mutants of bacteriorhodopsin. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[61]  C. Levinthal,et al.  Colicin E1 binding to membranes: time-resolved studies of spin-labeled mutants , 1993, Science.

[62]  C. Altenbach,et al.  SPIN LABELED CYSTEINES AS SENSORS FOR PROTEIN‐LIPID INTERACTION AND CONFORMATION IN RHODOPSIN , 1992, Photochemistry and photobiology.

[63]  W. Hubbell,et al.  Determination of electrostatic potentials at biological interfaces using electron-electron double resonance. , 1992, Biophysical journal.

[64]  Katherine A. Kantardjieff,et al.  The crystal structure of diphtheria toxin , 1992, Nature.

[65]  D. Ellar,et al.  Crystal structure of insecticidal δ-endotoxin from Bacillus thuringiensis at 2.5 Å resolution , 1991, Nature.

[66]  P Louisot,et al.  Mitochondrial contact sites. Lipid composition and dynamics. , 1990, The Journal of biological chemistry.

[67]  J. Hyde,et al.  Continuous and stopped flow EPR spectrometer based on a loop gap resonator , 1987 .

[68]  M. M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. , 1976, Analytical biochemistry.

[69]  Luca Scorrano,et al.  A distinct pathway remodels mitochondrial cristae and mobilizes cytochrome c during apoptosis. , 2002, Developmental cell.

[70]  R. Collier,et al.  Site-Directed Spin Labeling of Proteins , 2000 .

[71]  C. Altenbach,et al.  Investigation of structure and dynamics in membrane proteins using site-directed spin labeling , 1994 .

[72]  F. Szoka,et al.  Preparation of unilamellar liposomes of intermediate size (0.1-0.2 mumol) by a combination of reverse phase evaporation and extrusion through polycarbonate membranes. , 1980, Biochimica et biophysica acta.

[73]  C. Böttcher,et al.  A rapid and sensitive sub-micro phosphorus determination , 1961 .