Crystal structure of a conserved hypothetical protein TT1751 from Thermus thermophilus HB8

Seiichiro Kishishita, Ayako Tatsuguchi, Ryoko Ushikoshi-Nakayama, Takaho Terada, Seiki Kuramitsu, Sam-Yong Park, Jeremy R. H. Tame, Mikako Shirouzu, and Shigeyuki Yokoyama* RIKEN Genomic Sciences Center, Yokohama, Japan RIKEN Harima Institute at SPring-8, Hyogo, Japan Department of Biology, Graduate School of Science, Osaka University, Osaka, Japan Protein Design Laboratory, Yokohama City University, Yokohama, Japan Department of Biophysics and Biochemistry, Graduate School of Science, University of Tokyo, Tokyo, Japan

[1]  Collaborative Computational,et al.  The CCP4 suite: programs for protein crystallography. , 1994, Acta crystallographica. Section D, Biological crystallography.

[2]  Thomas C. Terwilliger,et al.  Electronic Reprint Biological Crystallography Maximum-likelihood Density Modification , 2022 .

[3]  J. Thornton,et al.  PROCHECK: a program to check the stereochemical quality of protein structures , 1993 .

[4]  Michael Y. Galperin,et al.  The COG database: new developments in phylogenetic classification of proteins from complete genomes , 2001, Nucleic Acids Res..

[5]  P. Kraulis A program to produce both detailed and schematic plots of protein structures , 1991 .

[6]  W. Kabsch A solution for the best rotation to relate two sets of vectors , 1976 .

[7]  W. Delano The PyMOL Molecular Graphics System , 2002 .

[8]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[9]  J. Thompson,et al.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.

[10]  Chris Sander,et al.  Dali/FSSP classification of three-dimensional protein folds , 1997, Nucleic Acids Res..

[11]  P R Evans,et al.  The structure and function of the β2‐adaptin appendage domain , 2000, The EMBO journal.

[12]  Axel T. Brunger,et al.  X-PLOR Version 3.1: A System for X-ray Crystallography and NMR , 1992 .

[13]  K. Imahori,et al.  Description of Thermus thermophilus (Yoshida and Oshima) comb. nov., a Nonsporulating Thermophilic Bacterium from a Japanese Thermal Spa , 1974 .

[14]  Patrice Gouet,et al.  ESPript: analysis of multiple sequence alignments in PostScript , 1999, Bioinform..

[15]  Thomas C. Terwilliger,et al.  Automated MAD and MIR structure solution , 1999, Acta crystallographica. Section D, Biological crystallography.

[16]  Z. Otwinowski,et al.  Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.

[17]  H. Miyatake,et al.  The RIKEN structural biology beamline II (BL44B2) at the SPring-8 , 2001 .