Large-scale automated identification of mouse brain cells in confocal light sheet microscopy images
暂无分享,去创建一个
Paolo Frasconi | Giulio Iannello | Ludovico Silvestri | Paolo Soda | Francesco Pavone | Roberto Cortini | P. Frasconi | G. Iannello | F. Pavone | L. Silvestri | P. Soda | Roberto Cortini
[1] Rogely Waite Boyce,et al. Design-based Stereology , 2010, Toxicologic pathology.
[2] R. Weiler,et al. Chemical Clearing and Dehydration of GFP Expressing Mouse Brains , 2012, PloS one.
[3] Kun Zhou,et al. Iso-charts: stretch-driven mesh parameterization using spectral analysis , 2004, SGP '04.
[4] Shaoqun Zeng,et al. Continuously tracing brain-wide long-distance axonal projections in mice at a one-micron voxel resolution , 2013, NeuroImage.
[5] P.K Sahoo,et al. A survey of thresholding techniques , 1988, Comput. Vis. Graph. Image Process..
[6] G. Iannello,et al. Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain. , 2012, Optics express.
[7] Hans-Ulrich Dodt,et al. Light sheet microscopy of living or cleared specimens , 2012, Current Opinion in Neurobiology.
[8] A. Schierloh,et al. Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain , 2007, Nature Methods.
[9] Jeremy D. Schmahmann,et al. A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale , 2009, PLoS Comput. Biol..
[10] Eugene W. Myers,et al. Unsupervised segmentation of noisy electron microscopy images using salient watersheds and region merging , 2013, BMC Bioinformatics.
[11] Alicia Hidalgo,et al. DeadEasy Mito-Glia: Automatic Counting of Mitotic Cells and Glial Cells in Drosophila , 2010, PloS one.
[12] Razvan Pascanu,et al. M L ] 2 0 A ug 2 01 3 Pylearn 2 : a machine learning research library , 2014 .
[13] Javier DeFelipe,et al. 3D segmentations of neuronal nuclei from confocal microscope image stacks , 2013, Front. Neuroanat..
[14] Davi D Bock,et al. Volume electron microscopy for neuronal circuit reconstruction , 2012, Current Opinion in Neurobiology.
[15] Fabian J. Theis,et al. An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy , 2013, BMC Bioinformatics.
[16] Andrew K. C. Wong,et al. A new method for gray-level picture thresholding using the entropy of the histogram , 1985, Comput. Vis. Graph. Image Process..
[17] Dorin Comaniciu,et al. Mean Shift: A Robust Approach Toward Feature Space Analysis , 2002, IEEE Trans. Pattern Anal. Mach. Intell..
[18] D. Woodruff-Pak,et al. Stereological estimation of Purkinje neuron number in C57BL/6 mice and its relation to associative learning , 2006, Neuroscience.
[19] Allan R. Jones,et al. A mesoscale connectome of the mouse brain , 2014, Nature.
[20] Olaf Sporns,et al. The Human Connectome: A Structural Description of the Human Brain , 2005, PLoS Comput. Biol..
[21] Hanchuan Peng,et al. Extensible visualization and analysis for multidimensional images using Vaa3D , 2014, Nature Protocols.
[22] Joseph F. Murray,et al. Supervised Learning of Image Restoration with Convolutional Networks , 2007, 2007 IEEE 11th International Conference on Computer Vision.
[23] J. Tenenbaum,et al. A global geometric framework for nonlinear dimensionality reduction. , 2000, Science.
[24] Gaël Varoquaux,et al. Scikit-learn: Machine Learning in Python , 2011, J. Mach. Learn. Res..
[25] P. R. Hof,et al. Design-based stereology in neuroscience , 2005, Neuroscience.
[26] Jon Louis Bentley,et al. Multidimensional binary search trees used for associative searching , 1975, CACM.
[27] Yee Whye Teh,et al. A Fast Learning Algorithm for Deep Belief Nets , 2006, Neural Computation.
[28] Moritz Helmstaedter,et al. High-accuracy neurite reconstruction for high-throughput neuroanatomy , 2011, Nature Neuroscience.
[29] P. Osten,et al. Mapping brain circuitry with a light microscope , 2013, Nature Methods.
[30] Flavio Keller,et al. Interactions between neuroactive steroids and reelin haploinsufficiency in Purkinje cell survival , 2009, Neurobiology of Disease.
[31] Rich Caruana,et al. Multitask Learning , 1998, Encyclopedia of Machine Learning and Data Mining.
[32] Kevin L. Briggman,et al. Wiring specificity in the direction-selectivity circuit of the retina , 2011, Nature.
[33] G. Knott,et al. Serial Section Scanning Electron Microscopy of Adult Brain Tissue Using Focused Ion Beam Milling , 2008, The Journal of Neuroscience.
[34] D Mayerich,et al. Knife‐edge scanning microscopy for imaging and reconstruction of three‐dimensional anatomical structures of the mouse brain , 2008, Journal of microscopy.
[35] W. Cleveland. Robust Locally Weighted Regression and Smoothing Scatterplots , 1979 .
[36] M Yuzaki,et al. Purification of Purkinje cells by fluorescence‐activated cell sorting from transgenic mice that express green fluorescent protein , 2001, The European journal of neuroscience.
[37] Jeff W Lichtman,et al. The rise of the 'projectome' , 2007, Nature Methods.
[38] W. Denk,et al. The Big and the Small: Challenges of Imaging the Brain’s Circuits , 2011, Science.
[39] Hanchuan Peng,et al. V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets , 2010, Nature Biotechnology.
[40] Giulio Iannello,et al. TeraStitcher - A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images , 2012, BMC Bioinformatics.
[41] Steffen Prohaska,et al. Large-Scale Automated Histology in the Pursuit of Connectomes , 2011, The Journal of Neuroscience.
[42] 廣瀬雄一,et al. Neuroscience , 2019, Workplace Attachments.
[43] Aaron S. Andalman,et al. Structural and molecular interrogation of intact biological systems , 2013, Nature.
[44] Hang Zhou,et al. NeuroGPS: automated localization of neurons for brain circuits using L1 minimization model , 2013, Scientific Reports.