PPIRank - an advanced method for ranking protein-protein interations in TAP/MS data
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Pengyu Hong | Norbert Perrimon | Meghana Kulkarni | Xiaoyun Sun | Young Kwon | N. Perrimon | Young Kwon | Meghana Kulkarni | Pengyu Hong | Xiaoyun Sun
[1] M. Gerstein,et al. Getting connected: analysis and principles of biological networks. , 2007, Genes & development.
[2] Hyungwon Choi,et al. SAINT: Probabilistic Scoring of Affinity Purification - Mass Spectrometry Data , 2010, Nature Methods.
[3] S. Fields. High‐throughput two‐hybrid analysis , 2005, The FEBS journal.
[4] Mathieu Blanchette,et al. Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. , 2007, Molecular cell.
[5] Mihaela E. Sardiu,et al. Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics , 2008, Proceedings of the National Academy of Sciences.
[6] Sean R. Collins,et al. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae , 2006, Nature.
[7] N. Perrimon,et al. Protein Complex–Based Analysis Framework for High-Throughput Data Sets , 2013, Science Signaling.
[8] P. Bork,et al. Proteome survey reveals modularity of the yeast cell machinery , 2006, Nature.
[9] M. J. Bayarri,et al. Confusion Over Measures of Evidence (p's) Versus Errors (α's) in Classical Statistical Testing , 2003 .
[10] Lan Huang,et al. Identifying Dynamic Interactors of Protein Complexes by Quantitative Mass Spectrometry*S , 2008, Molecular & Cellular Proteomics.
[11] P. Bork,et al. Functional organization of the yeast proteome by systematic analysis of protein complexes , 2002, Nature.
[12] A. Bauer,et al. Analyzing protein complexes in Drosophila with tandem affinity purification–mass spectrometry , 2005, Developmental dynamics : an official publication of the American Association of Anatomists.
[13] Stuart H. Orkin,et al. The SWI/SNF complex — chromatin and cancer , 2004, Nature Reviews Cancer.
[14] J. Yates,et al. Direct analysis of protein complexes using mass spectrometry , 1999, Nature Biotechnology.
[15] D. Whelan,et al. THE PROMISE ( AND PERIL ) , 2017 .
[16] Matthew A. Hibbs,et al. Visualization of omics data for systems biology , 2010, Nature Methods.
[17] Tobias Müller,et al. Identifying functional modules in protein–protein interaction networks: an integrated exact approach , 2008, ISMB.
[18] J. Yates,et al. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. , 2004, Analytical chemistry.
[19] Xiaoyun Sun,et al. An advanced method for identifying protein-protein interaction by analyzing TAP/MS data , 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine.
[20] S. Gygi,et al. Defining the Human Deubiquitinating Enzyme Interaction Landscape , 2009, Cell.
[21] Wei Wang,et al. Identification of Novel Protein-Protein Interactions Using A Versatile Mammalian Tandem Affinity Purification Expression System* , 2003, Molecular & Cellular Proteomics.
[22] Bonnie Berger,et al. Proteomic and Functional Genomic Landscape of Receptor Tyrosine Kinase and Ras to Extracellular Signal–Regulated Kinase Signaling , 2011, Science Signaling.
[23] G. Casari,et al. A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway. , 2004, Nature cell biology.
[24] R. Aebersold,et al. Analysis of protein complexes using mass spectrometry , 2007, Nature Reviews Molecular Cell Biology.